Wall clock time and date at job start Sat Apr 11 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.47040 * 2 1 4 4 C 1.34771 * 119.99939 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99941 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00002 * 180.02562 * 4 3 2 7 7 N 1.46503 * 109.46970 * 179.97438 * 6 4 3 8 8 C 1.46198 * 118.77624 * 89.99906 * 7 6 4 9 9 C 1.52448 * 109.93248 * 162.41754 * 8 7 6 10 10 C 1.54104 * 110.13273 * 169.32246 * 9 8 7 11 11 C 1.55042 * 102.81169 * 140.91031 * 10 9 8 12 12 N 1.48583 * 103.28751 * 322.98932 * 11 10 9 13 13 C 1.46898 * 110.99699 * 159.44307 * 12 11 10 14 14 C 1.53003 * 109.47063 * 52.58983 * 13 12 11 15 15 C 1.50703 * 109.47038 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 C 1.48029 * 105.82868 * 38.92331 * 12 11 10 24 24 O 1.42574 * 110.10182 * 47.75469 * 9 8 7 25 25 C 1.43037 * 113.17004 * 293.24053 * 24 9 8 26 26 C 1.33842 * 118.77458 * 269.97693 * 7 6 4 27 27 O 1.21280 * 118.69898 * 2.39880 * 26 7 6 28 28 H 1.08999 * 109.47533 * 59.99840 * 1 2 3 29 29 H 1.08998 * 109.46934 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46979 * 299.99374 * 1 2 3 31 31 H 1.09006 * 109.46618 * 240.00629 * 2 1 3 32 32 H 1.08997 * 109.46917 * 120.00578 * 2 1 3 33 33 H 0.96999 * 119.99752 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.46902 * 60.00001 * 6 4 3 35 35 H 1.09002 * 109.47078 * 299.99536 * 6 4 3 36 36 H 1.09006 * 109.39514 * 42.28051 * 8 7 6 37 37 H 1.09002 * 109.39604 * 282.55977 * 8 7 6 38 38 H 1.08998 * 110.74504 * 259.23826 * 10 9 8 39 39 H 1.08999 * 110.74927 * 22.39760 * 10 9 8 40 40 H 1.09004 * 110.65418 * 204.54146 * 11 10 9 41 41 H 1.08998 * 110.66046 * 81.44322 * 11 10 9 42 42 H 1.08996 * 109.47442 * 292.59103 * 13 12 11 43 43 H 1.08996 * 109.46826 * 172.59101 * 13 12 11 44 44 H 1.09003 * 109.46825 * 60.00196 * 14 13 12 45 45 H 1.08996 * 109.47396 * 299.99770 * 14 13 12 46 46 H 0.96998 * 119.99255 * 0.02562 * 18 17 15 47 47 H 1.09008 * 109.98007 * 94.11079 * 23 12 11 48 48 H 1.09004 * 109.97387 * 215.35612 * 23 12 11 49 49 H 1.09000 * 109.38090 * 288.50466 * 25 24 9 50 50 H 1.08997 * 109.41210 * 168.76840 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0015 6 6 3.8457 3.0483 0.0001 7 7 5.3108 3.0483 -0.0001 8 6 6.0144 3.0488 -1.2815 9 6 7.4621 3.4816 -1.0793 10 6 8.2751 3.2308 -2.3642 11 6 9.1980 4.4746 -2.4354 12 7 8.3290 5.5734 -1.9401 13 6 9.1331 6.7120 -1.4764 14 6 10.1147 7.1243 -2.5753 15 6 10.9391 8.2928 -2.0998 16 1 10.7786 8.7009 -1.1127 17 6 11.8974 8.8417 -2.9252 18 7 12.0925 8.3452 -4.1273 19 14 12.9197 10.2896 -2.3354 20 1 12.2374 11.5578 -2.6980 21 1 14.2574 10.2458 -2.9789 22 1 13.0773 10.2164 -0.8606 23 6 7.5393 4.9944 -0.8300 24 8 8.0390 2.7682 0.0120 25 6 7.4538 3.1008 1.2740 26 6 5.9551 3.0482 1.1730 27 8 5.3039 3.0037 2.1952 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.3880 2.1185 0.0004 34 1 3.4828 3.5616 0.8905 35 1 3.4820 3.5627 -0.8895 36 1 5.5219 3.7409 -1.9647 37 1 5.9927 2.0454 -1.7069 38 1 8.8640 2.3178 -2.2765 39 1 7.6190 3.1832 -3.2333 40 1 9.5094 4.6640 -3.4627 41 1 10.0649 4.3479 -1.7870 42 1 9.6875 6.4254 -0.5829 43 1 8.4759 7.5497 -1.2432 44 1 9.5602 7.4110 -3.4688 45 1 10.7718 6.2866 -2.8085 46 1 11.5618 7.5931 -4.4332 47 1 8.0346 5.1903 0.1211 48 1 6.5371 5.4230 -0.8229 49 1 7.7622 4.1058 1.5621 50 1 7.7910 2.3899 2.0283 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:17 Heat of formation + Delta-G solvation = -131.445641 kcal Electronic energy + Delta-G solvation = -30524.625294 eV Core-core repulsion = 26357.848693 eV Total energy + Delta-G solvation = -4166.776602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.45802 -40.82377 -39.97816 -38.17192 -36.74292 -36.16870 -35.75361 -33.58142 -32.06416 -30.72645 -30.47421 -29.72519 -27.79895 -26.73305 -25.57995 -24.01059 -23.84552 -22.57134 -21.71425 -21.55901 -19.66985 -19.10060 -18.78611 -18.49516 -18.09249 -17.30397 -17.06751 -16.76568 -16.54233 -16.34033 -15.87415 -15.80613 -15.66066 -15.34068 -15.21975 -15.01814 -14.66695 -14.62495 -14.45659 -14.17275 -13.72964 -13.52835 -13.36100 -13.22455 -13.15878 -13.02131 -12.72900 -12.71577 -12.46767 -12.39465 -12.32278 -12.06308 -11.99957 -11.91969 -11.69855 -11.55496 -11.26022 -10.76704 -10.56055 -10.53311 -10.16874 -9.94708 -9.49533 -8.69113 -6.39484 1.19638 1.52664 1.53037 1.54078 1.61686 1.79312 2.27267 2.42128 2.55601 2.99726 3.08010 3.16170 3.32590 3.42935 3.59686 3.74090 3.96879 4.05481 4.11368 4.17219 4.20311 4.21096 4.26001 4.31243 4.32430 4.35367 4.41389 4.47679 4.48154 4.61322 4.68577 4.83303 4.84756 4.90105 4.91279 5.00930 5.02267 5.06983 5.22722 5.23930 5.40296 5.41288 5.66834 5.77752 5.91200 6.08304 6.10642 6.18638 6.46259 6.58175 6.78176 7.18084 7.41928 8.72326 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026164 B = 0.002099 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.935330 B =13337.199939 C =13513.300956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.111 3.889 3 N -0.717 5.717 4 C 0.492 3.508 5 O -0.580 6.580 6 C 0.088 3.912 7 N -0.584 5.584 8 C 0.106 3.894 9 C 0.094 3.906 10 C -0.095 4.095 11 C 0.037 3.963 12 N -0.515 5.515 13 C 0.076 3.924 14 C 0.018 3.982 15 C -0.622 4.622 16 H 0.048 0.952 17 C -0.036 4.036 18 N -0.935 5.935 19 Si 1.119 2.881 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.271 1.271 23 C 0.013 3.987 24 O -0.368 6.368 25 C 0.047 3.953 26 C 0.493 3.507 27 O -0.576 6.576 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.419 0.581 34 H 0.121 0.879 35 H 0.156 0.844 36 H 0.123 0.877 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.030 0.970 42 H 0.018 0.982 43 H 0.065 0.935 44 H -0.006 1.006 45 H -0.004 1.004 46 H 0.257 0.743 47 H 0.047 0.953 48 H 0.099 0.901 49 H 0.101 0.899 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.326 -14.581 6.636 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 N -0.371 5.371 4 C 0.278 3.722 5 O -0.459 6.459 6 C -0.038 4.038 7 N -0.315 5.315 8 C -0.016 4.016 9 C 0.054 3.946 10 C -0.133 4.133 11 C -0.091 4.091 12 N -0.239 5.239 13 C -0.052 4.052 14 C -0.019 4.019 15 C -0.660 4.660 16 H 0.067 0.933 17 C -0.234 4.234 18 N -0.572 5.572 19 Si 0.940 3.060 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.196 1.196 23 C -0.116 4.116 24 O -0.286 6.286 25 C -0.032 4.032 26 C 0.282 3.718 27 O -0.457 6.457 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.256 0.744 34 H 0.139 0.861 35 H 0.173 0.827 36 H 0.141 0.859 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.095 0.905 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.083 0.917 44 H 0.013 0.987 45 H 0.014 0.986 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.100 -14.171 6.282 27.819 hybrid contribution -0.783 -1.015 1.165 1.732 sum -23.883 -15.186 7.447 29.266 Atomic orbital electron populations 1.21949 0.91588 1.04176 1.03491 1.21343 0.96388 0.82491 1.01032 1.45950 1.06422 1.09962 1.74759 1.21591 0.82949 0.92469 0.75174 1.90711 1.56699 1.47644 1.50893 1.21656 0.80322 0.93496 1.08286 1.47139 1.06474 1.71534 1.06337 1.22240 0.90691 1.03998 0.84708 1.22360 0.93054 0.90415 0.88796 1.22476 0.98011 0.97866 0.94905 1.23199 0.94843 0.90449 1.00571 1.64937 1.22763 1.06318 1.29924 1.22037 0.94180 0.92846 0.96125 1.19132 0.93310 0.95116 0.94368 1.22459 1.22370 1.17993 1.03217 0.93319 1.27387 0.98192 1.03994 0.93839 1.70883 1.41729 1.25408 1.19212 0.82906 0.74925 0.72543 0.75577 1.19654 1.20779 1.19605 1.23588 1.00416 0.93753 0.93811 1.88156 1.60781 1.65067 1.14633 1.22875 0.87204 1.05154 0.87996 1.21155 0.92222 0.75116 0.83291 1.90694 1.68086 1.51745 1.35143 0.90621 0.90004 0.91236 0.92479 0.93558 0.74393 0.86097 0.82691 0.85888 0.90002 0.88616 0.86477 0.90504 0.95196 0.96330 0.91663 0.98728 0.98581 0.93379 0.93481 0.88254 0.88139 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.03 71.98 0.72 -0.06 16 2 C 0.11 1.37 6.39 86.38 0.55 1.92 16 3 N -0.72 -8.59 5.56 -463.04 -2.57 -11.16 16 4 C 0.49 9.57 7.89 87.66 0.69 10.26 16 5 O -0.58 -17.31 16.43 -3.04 -0.05 -17.36 16 6 C 0.09 1.29 5.77 85.63 0.49 1.79 16 7 N -0.58 -12.06 2.29 -829.88 -1.90 -13.96 16 8 C 0.11 1.92 5.03 86.25 0.43 2.35 16 9 C 0.09 2.15 0.96 -10.43 -0.01 2.14 16 10 C -0.09 -2.15 6.32 31.67 0.20 -1.95 16 11 C 0.04 1.18 5.11 86.68 0.44 1.62 16 12 N -0.52 -17.22 5.40 -883.28 -4.77 -21.99 16 13 C 0.08 3.17 4.97 86.30 0.43 3.60 16 14 C 0.02 0.93 3.95 29.85 0.12 1.05 16 15 C -0.62 -35.64 9.11 25.60 0.23 -35.40 16 16 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 17 C -0.04 -2.11 5.46 84.65 0.46 -1.65 16 18 N -0.94 -57.85 13.65 21.45 0.29 -57.56 16 19 Si 1.12 50.32 29.90 68.60 2.05 52.37 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 23 C 0.01 0.33 5.38 86.26 0.46 0.79 16 24 O -0.37 -9.57 10.34 -148.98 -1.54 -11.11 16 25 C 0.05 1.11 6.42 71.11 0.46 1.56 16 26 C 0.49 12.83 7.42 87.68 0.65 13.48 16 27 O -0.58 -18.17 16.38 -3.03 -0.05 -18.22 16 28 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.42 1.91 8.47 -92.71 -0.79 1.13 16 34 H 0.12 1.74 7.29 -2.39 -0.02 1.73 16 35 H 0.16 0.87 7.94 -2.39 -0.02 0.85 16 36 H 0.12 1.54 7.86 -2.38 -0.02 1.52 16 37 H 0.08 1.56 8.11 -2.39 -0.02 1.54 16 38 H 0.10 2.07 8.06 -2.39 -0.02 2.05 16 39 H 0.12 2.08 7.85 -2.39 -0.02 2.06 16 40 H 0.08 2.62 7.68 -2.39 -0.02 2.60 16 41 H 0.03 1.06 7.99 -2.39 -0.02 1.04 16 42 H 0.02 0.79 7.82 -2.39 -0.02 0.77 16 43 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 44 H -0.01 -0.31 8.01 -2.39 -0.02 -0.33 16 45 H 0.00 -0.22 6.66 -2.39 -0.02 -0.24 16 46 H 0.26 16.04 7.22 -92.71 -0.67 15.37 16 47 H 0.05 1.33 5.62 -2.38 -0.01 1.31 16 48 H 0.10 2.28 7.62 -2.38 -0.02 2.26 16 49 H 0.10 2.22 6.53 -2.39 -0.02 2.21 16 50 H 0.14 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -82.10 396.95 -1.95 -84.04 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.26 Total: 13.43 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 6.34 Total: 1.51 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -8.95 Total: -104.67 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -1.64 Total: -46.68 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.05 Total: 52.37 kcal Total: -82.10 -1.95 -84.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.403 kcal (2) G-P(sol) polarization free energy of solvation -82.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds