Wall clock time and date at job start Sat Apr 11 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 120.00038 * 2 1 4 4 N 1.34775 * 120.00092 * 180.02562 * 2 1 3 5 5 C 1.46926 * 120.62794 * 355.27885 * 4 2 1 6 6 C 1.53193 * 108.77587 * 126.41728 * 5 4 2 7 7 C 1.53035 * 109.31625 * 54.63013 * 6 5 4 8 8 C 1.53078 * 109.65988 * 298.70169 * 7 6 5 9 9 H 1.08999 * 109.38943 * 301.28078 * 8 7 6 10 10 C 1.50700 * 109.62304 * 181.16572 * 8 7 6 11 11 O 1.21276 * 119.99783 * 0.11354 * 10 8 7 12 12 N 1.34776 * 119.99742 * 180.10228 * 10 8 7 13 13 C 1.46505 * 119.99699 * 184.54850 * 12 10 8 14 14 C 1.53001 * 112.94414 * 294.18378 * 13 12 10 15 15 C 1.53002 * 109.47351 * 305.10440 * 14 13 12 16 16 O 1.42895 * 109.46921 * 185.04995 * 15 14 13 17 17 C 1.53948 * 113.73897 * 162.59369 * 13 12 10 18 18 N 1.47805 * 86.03545 * 222.08513 * 17 13 12 19 19 C 1.36938 * 134.45762 * 204.64656 * 18 17 13 20 20 H 1.07999 * 119.99943 * 179.86981 * 19 18 17 21 21 C 1.38812 * 120.00083 * 359.85980 * 19 18 17 22 22 N 1.31625 * 119.99803 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00315 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46886 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47026 * 120.00458 * 23 21 19 26 26 H 1.48500 * 109.47166 * 240.00780 * 23 21 19 27 27 C 1.47582 * 91.05415 * 24.55164 * 18 17 13 28 28 C 1.46927 * 120.63141 * 175.29804 * 4 2 1 29 29 H 1.08996 * 109.47011 * 185.31943 * 1 2 3 30 30 H 1.09004 * 109.47012 * 305.31202 * 1 2 3 31 31 H 1.08996 * 109.47473 * 65.31107 * 1 2 3 32 32 H 1.09002 * 109.58624 * 246.19916 * 5 4 2 33 33 H 1.08997 * 109.58687 * 6.48067 * 5 4 2 34 34 H 1.08995 * 109.49900 * 174.58903 * 6 5 4 35 35 H 1.09008 * 109.49338 * 294.67942 * 6 5 4 36 36 H 1.09003 * 109.46195 * 58.65458 * 7 6 5 37 37 H 1.09004 * 109.46390 * 178.63311 * 7 6 5 38 38 H 0.96999 * 120.00377 * 4.56171 * 12 10 8 39 39 H 1.08995 * 109.46948 * 65.10888 * 14 13 12 40 40 H 1.09003 * 109.47049 * 185.10483 * 14 13 12 41 41 H 1.09004 * 109.47229 * 305.05269 * 15 14 13 42 42 H 1.08997 * 109.46567 * 65.05091 * 15 14 13 43 43 H 0.96705 * 114.00117 * 180.02562 * 16 15 14 44 44 H 1.09003 * 113.76885 * 336.34771 * 17 13 12 45 45 H 1.09001 * 113.76875 * 107.74538 * 17 13 12 46 46 H 0.96996 * 119.99690 * 179.97438 * 22 21 19 47 47 H 1.09000 * 113.76873 * 221.15729 * 27 18 17 48 48 H 1.08996 * 113.77362 * 89.75265 * 27 18 17 49 49 H 1.09005 * 109.58530 * 353.37691 * 28 4 2 50 50 H 1.09000 * 109.58315 * 113.65609 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4640 -2.4455 0.1030 6 6 1.8893 -3.3450 -1.0618 7 6 3.4138 -3.4781 -1.0682 8 6 4.0503 -2.0999 -1.2650 9 1 3.7013 -1.6709 -2.2043 10 6 5.5507 -2.2356 -1.2997 11 8 6.0636 -3.3281 -1.1811 12 7 6.3226 -1.1429 -1.4629 13 6 7.7746 -1.2850 -1.5966 14 6 8.4415 -1.8151 -0.3258 15 6 8.0680 -0.9201 0.8576 16 8 8.7829 -1.3443 2.0199 17 6 8.4669 -0.0439 -2.1885 18 7 9.2696 -0.9973 -2.9831 19 6 10.5027 -0.9513 -3.5767 20 1 10.8750 -1.8100 -4.1156 21 6 11.2741 0.1992 -3.4861 22 7 10.8205 1.2456 -2.8291 23 14 12.9560 0.2624 -4.2964 24 1 13.2308 -1.0333 -4.9680 25 1 12.9805 1.3553 -5.3014 26 1 13.9935 0.5154 -3.2645 27 6 8.2100 -2.0192 -2.8778 28 6 3.6464 -1.1854 -0.1042 29 1 -0.3633 -1.0232 0.0953 30 1 -0.3633 0.5940 0.8386 31 1 -0.3634 0.4292 -0.9337 32 1 1.7132 -2.9288 1.0477 33 1 0.3898 -2.2668 0.0562 34 1 1.4385 -4.3304 -0.9439 35 1 1.5587 -2.9034 -2.0020 36 1 3.7458 -3.8967 -0.1181 37 1 3.7175 -4.1373 -1.8814 38 1 5.9168 -0.2623 -1.4916 39 1 8.1006 -2.8324 -0.1338 40 1 9.5238 -1.8130 -0.4555 41 1 8.3281 0.1132 0.6280 42 1 6.9965 -0.9923 1.0436 43 1 8.5944 -0.8205 2.8106 44 1 7.8073 0.5825 -2.7892 45 1 9.0486 0.5231 -1.4618 46 1 11.3596 2.0494 -2.7654 47 1 8.5871 -3.0264 -2.7002 48 1 7.4749 -1.9744 -3.6813 49 1 4.0121 -0.1756 -0.2901 50 1 4.0736 -1.5635 0.8246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276062588.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:33 Heat of formation + Delta-G solvation = -64.184892 kcal Electronic energy + Delta-G solvation = -31216.132288 eV Core-core repulsion = 27052.272331 eV Total energy + Delta-G solvation = -4163.859957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.78410 -39.82987 -38.24513 -37.02486 -36.34636 -33.72363 -33.34871 -32.23939 -31.50031 -30.32439 -29.69349 -27.08580 -25.55827 -25.05696 -24.47268 -23.26122 -22.04375 -21.33369 -19.91138 -19.31272 -18.62530 -17.65983 -17.08973 -16.80306 -16.72344 -16.34048 -15.73707 -15.51954 -15.07840 -14.73731 -14.73012 -14.48935 -14.01074 -13.97789 -13.71774 -13.67340 -13.54581 -13.42454 -13.04789 -12.54397 -12.50678 -12.38332 -11.99279 -11.74736 -11.73316 -11.51443 -11.24009 -11.18000 -11.02265 -10.94403 -10.90057 -10.76427 -10.68406 -10.17114 -10.08957 -9.89260 -9.69272 -9.56141 -9.19444 -8.97715 -8.89326 -8.59560 -6.92236 -5.79568 -3.11626 2.30529 2.56832 2.89940 3.37497 3.41405 3.46477 3.47890 4.17398 4.30444 4.45855 4.50497 4.52707 4.55618 4.67758 4.72017 4.88333 4.99823 5.03942 5.11573 5.20134 5.20947 5.30699 5.35193 5.48064 5.49324 5.50464 5.55332 5.57461 5.66610 5.74651 5.83654 5.91011 5.97143 6.07291 6.10839 6.34948 6.48328 6.49352 6.64147 6.77586 6.85916 7.05012 7.12896 7.31376 7.49395 7.81777 7.85265 7.92320 7.94848 8.50363 9.02126 9.68258 10.54313 11.37989 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.002789 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.415753 B =10036.865750 C =10094.916980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.512 3.488 3 O -0.544 6.544 4 N -0.612 5.612 5 C 0.099 3.901 6 C -0.136 4.136 7 C -0.100 4.100 8 C -0.123 4.123 9 H 0.099 0.901 10 C 0.519 3.481 11 O -0.531 6.531 12 N -0.714 5.714 13 C 0.123 3.877 14 C -0.094 4.094 15 C 0.084 3.916 16 O -0.574 6.574 17 C 0.166 3.834 18 N -0.604 5.604 19 C -0.219 4.219 20 H 0.083 0.917 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.127 3.873 28 C 0.121 3.879 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.397 0.603 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.048 0.952 42 H 0.034 0.966 43 H 0.372 0.628 44 H 0.031 0.969 45 H 0.082 0.918 46 H 0.254 0.746 47 H 0.051 0.949 48 H 0.034 0.966 49 H 0.097 0.903 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.779 -5.874 8.235 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.301 3.699 3 O -0.421 6.421 4 N -0.346 5.346 5 C -0.024 4.024 6 C -0.174 4.174 7 C -0.138 4.138 8 C -0.146 4.146 9 H 0.117 0.883 10 C 0.303 3.697 11 O -0.407 6.407 12 N -0.365 5.365 13 C 0.037 3.963 14 C -0.133 4.133 15 C 0.007 3.993 16 O -0.379 6.379 17 C 0.040 3.960 18 N -0.331 5.331 19 C -0.347 4.347 20 H 0.100 0.900 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.744 3.256 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.001 3.999 28 C -0.002 4.002 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.231 0.769 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.217 0.783 44 H 0.049 0.951 45 H 0.100 0.900 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.052 0.948 49 H 0.116 0.884 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.516 -6.395 7.775 24.664 hybrid contribution 0.339 1.012 -0.312 1.112 sum -22.177 -5.382 7.463 24.010 Atomic orbital electron populations 1.22044 0.91825 1.04565 1.05435 1.20835 0.90665 0.83004 0.75410 1.90748 1.70570 1.30986 1.49780 1.48157 1.06989 1.06352 1.73126 1.21985 0.97310 0.83785 0.99296 1.21959 0.96678 1.00055 0.98690 1.21329 0.93479 0.95003 1.03959 1.21748 0.93292 0.98653 1.00857 0.88304 1.20253 0.88166 0.84810 0.76472 1.90690 1.74920 1.26268 1.48835 1.46282 1.07988 1.08878 1.73392 1.22977 0.76976 1.01428 0.94910 1.21335 1.02273 0.99163 0.90520 1.22104 0.93702 0.97990 0.85550 1.86499 1.70233 1.60783 1.20353 1.22589 0.90355 0.90260 0.92812 1.45700 1.13433 1.11476 1.62455 1.19040 0.89655 0.98967 1.27028 0.89964 1.24779 0.98872 0.95870 1.00825 1.69799 1.37424 1.03861 1.45738 0.86023 0.83647 0.77402 0.78560 1.20424 1.21769 1.21632 1.22793 0.90349 0.94329 0.92459 1.21506 0.79916 1.01151 0.97651 0.89829 0.88764 0.88603 0.90945 0.88858 0.90113 0.91271 0.90862 0.90483 0.76866 0.90698 0.89191 0.93360 0.94811 0.78284 0.95140 0.89988 0.93633 0.93051 0.94798 0.88430 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 10.12 36.01 0.36 -0.59 16 2 C 0.51 5.02 7.80 -10.99 -0.09 4.93 16 3 O -0.54 -7.84 16.53 5.55 0.09 -7.74 16 4 N -0.61 -5.20 2.97 -172.76 -0.51 -5.71 16 5 C 0.10 0.53 6.36 -3.71 -0.02 0.51 16 6 C -0.14 -0.80 6.08 -26.61 -0.16 -0.96 16 7 C -0.10 -0.91 4.47 -26.67 -0.12 -1.03 16 8 C -0.12 -1.29 2.69 -91.63 -0.25 -1.54 16 9 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 10 C 0.52 7.46 6.83 -10.99 -0.08 7.38 16 11 O -0.53 -9.44 14.30 5.56 0.08 -9.36 16 12 N -0.71 -10.70 4.55 -49.07 -0.22 -10.92 16 13 C 0.12 2.34 0.67 -134.04 -0.09 2.25 16 14 C -0.09 -1.83 4.81 -26.73 -0.13 -1.96 16 15 C 0.08 1.39 6.77 37.16 0.25 1.65 16 16 O -0.57 -9.39 13.66 -35.23 -0.48 -9.87 16 17 C 0.17 3.78 6.65 -2.84 -0.02 3.76 16 18 N -0.60 -15.50 3.55 -177.52 -0.63 -16.13 16 19 C -0.22 -6.18 10.70 -15.06 -0.16 -6.34 16 20 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 22 N -0.92 -26.95 11.39 55.49 0.63 -26.32 16 23 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 C 0.13 2.78 7.71 -2.97 -0.02 2.76 16 28 C 0.12 1.21 5.54 -3.71 -0.02 1.19 16 29 H 0.08 0.23 5.10 -51.93 -0.26 -0.03 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.27 5.04 -51.93 -0.26 0.01 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 37 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.40 5.16 8.13 -40.82 -0.33 4.83 16 39 H 0.07 1.51 6.86 -51.93 -0.36 1.16 16 40 H 0.09 2.04 8.02 -51.93 -0.42 1.62 16 41 H 0.05 0.81 7.48 -51.93 -0.39 0.43 16 42 H 0.03 0.50 7.83 -51.93 -0.41 0.09 16 43 H 0.37 4.09 9.12 45.56 0.42 4.50 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 2.05 6.60 -51.93 -0.34 1.71 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.05 1.15 8.10 -51.93 -0.42 0.73 16 48 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.10 1.10 6.54 -51.93 -0.34 0.76 16 50 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 394.94 15.07 5.95 5.95 Total: -1.00 -36.10 394.94 -8.06 -44.16 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.31 Total: 6.95 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -0.63 Total: 11.71 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.74 Total: -59.08 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.31 Total: -26.98 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.10 -8.06 -44.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276062588.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.029 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds