Wall clock time and date at job start Sat Apr 11 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 120.00038 * 2 1 4 4 N 1.34775 * 120.00092 * 180.02562 * 2 1 3 5 5 C 1.46926 * 120.62794 * 355.27885 * 4 2 1 6 6 C 1.53193 * 108.77587 * 126.41728 * 5 4 2 7 7 C 1.53035 * 109.31625 * 54.63013 * 6 5 4 8 8 C 1.53078 * 109.65988 * 298.70169 * 7 6 5 9 9 H 1.08999 * 109.38943 * 301.28078 * 8 7 6 10 10 C 1.50700 * 109.62304 * 181.16572 * 8 7 6 11 11 O 1.21276 * 119.99783 * 0.11354 * 10 8 7 12 12 N 1.34776 * 119.99742 * 180.10228 * 10 8 7 13 13 C 1.46505 * 119.99699 * 184.54850 * 12 10 8 14 14 C 1.53001 * 112.94414 * 294.18378 * 13 12 10 15 15 C 1.53002 * 109.47351 * 305.10440 * 14 13 12 16 16 O 1.42895 * 109.46921 * 185.04995 * 15 14 13 17 17 C 1.53948 * 113.73897 * 162.59369 * 13 12 10 18 18 N 1.47805 * 86.03545 * 222.08513 * 17 13 12 19 19 C 1.36938 * 134.45762 * 204.64656 * 18 17 13 20 20 H 1.07999 * 119.99943 * 179.86981 * 19 18 17 21 21 C 1.38812 * 120.00083 * 359.85980 * 19 18 17 22 22 N 1.31625 * 119.99803 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00315 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46886 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47026 * 120.00458 * 23 21 19 26 26 H 1.48500 * 109.47166 * 240.00780 * 23 21 19 27 27 C 1.47582 * 91.05415 * 24.55164 * 18 17 13 28 28 C 1.46927 * 120.63141 * 175.29804 * 4 2 1 29 29 H 1.08996 * 109.47011 * 185.31943 * 1 2 3 30 30 H 1.09004 * 109.47012 * 305.31202 * 1 2 3 31 31 H 1.08996 * 109.47473 * 65.31107 * 1 2 3 32 32 H 1.09002 * 109.58624 * 246.19916 * 5 4 2 33 33 H 1.08997 * 109.58687 * 6.48067 * 5 4 2 34 34 H 1.08995 * 109.49900 * 174.58903 * 6 5 4 35 35 H 1.09008 * 109.49338 * 294.67942 * 6 5 4 36 36 H 1.09003 * 109.46195 * 58.65458 * 7 6 5 37 37 H 1.09004 * 109.46390 * 178.63311 * 7 6 5 38 38 H 0.96999 * 120.00377 * 4.56171 * 12 10 8 39 39 H 1.08995 * 109.46948 * 65.10888 * 14 13 12 40 40 H 1.09003 * 109.47049 * 185.10483 * 14 13 12 41 41 H 1.09004 * 109.47229 * 305.05269 * 15 14 13 42 42 H 1.08997 * 109.46567 * 65.05091 * 15 14 13 43 43 H 0.96705 * 114.00117 * 180.02562 * 16 15 14 44 44 H 1.09003 * 113.76885 * 336.34771 * 17 13 12 45 45 H 1.09001 * 113.76875 * 107.74538 * 17 13 12 46 46 H 0.96996 * 119.99690 * 179.97438 * 22 21 19 47 47 H 1.09000 * 113.76873 * 221.15729 * 27 18 17 48 48 H 1.08996 * 113.77362 * 89.75265 * 27 18 17 49 49 H 1.09005 * 109.58530 * 353.37691 * 28 4 2 50 50 H 1.09000 * 109.58315 * 113.65609 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4640 -2.4455 0.1030 6 6 1.8893 -3.3450 -1.0618 7 6 3.4138 -3.4781 -1.0682 8 6 4.0503 -2.0999 -1.2650 9 1 3.7013 -1.6709 -2.2043 10 6 5.5507 -2.2356 -1.2997 11 8 6.0636 -3.3281 -1.1811 12 7 6.3226 -1.1429 -1.4629 13 6 7.7746 -1.2850 -1.5966 14 6 8.4415 -1.8151 -0.3258 15 6 8.0680 -0.9201 0.8576 16 8 8.7829 -1.3443 2.0199 17 6 8.4669 -0.0439 -2.1885 18 7 9.2696 -0.9973 -2.9831 19 6 10.5027 -0.9513 -3.5767 20 1 10.8750 -1.8100 -4.1156 21 6 11.2741 0.1992 -3.4861 22 7 10.8205 1.2456 -2.8291 23 14 12.9560 0.2624 -4.2964 24 1 13.2308 -1.0333 -4.9680 25 1 12.9805 1.3553 -5.3014 26 1 13.9935 0.5154 -3.2645 27 6 8.2100 -2.0192 -2.8778 28 6 3.6464 -1.1854 -0.1042 29 1 -0.3633 -1.0232 0.0953 30 1 -0.3633 0.5940 0.8386 31 1 -0.3634 0.4292 -0.9337 32 1 1.7132 -2.9288 1.0477 33 1 0.3898 -2.2668 0.0562 34 1 1.4385 -4.3304 -0.9439 35 1 1.5587 -2.9034 -2.0020 36 1 3.7458 -3.8967 -0.1181 37 1 3.7175 -4.1373 -1.8814 38 1 5.9168 -0.2623 -1.4916 39 1 8.1006 -2.8324 -0.1338 40 1 9.5238 -1.8130 -0.4555 41 1 8.3281 0.1132 0.6280 42 1 6.9965 -0.9923 1.0436 43 1 8.5944 -0.8205 2.8106 44 1 7.8073 0.5825 -2.7892 45 1 9.0486 0.5231 -1.4618 46 1 11.3596 2.0494 -2.7654 47 1 8.5871 -3.0264 -2.7002 48 1 7.4749 -1.9744 -3.6813 49 1 4.0121 -0.1756 -0.2901 50 1 4.0736 -1.5635 0.8246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276062588.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:32 Heat of formation + Delta-G solvation = -92.630119 kcal Electronic energy + Delta-G solvation = -31217.365765 eV Core-core repulsion = 27052.272331 eV Total energy + Delta-G solvation = -4165.093434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.83216 -40.97538 -39.59692 -37.96344 -37.73455 -35.31828 -34.25916 -33.75147 -32.55723 -31.73692 -30.32439 -29.01720 -26.89491 -26.27368 -25.55697 -24.66377 -23.36809 -22.56076 -21.07839 -20.16962 -19.97593 -18.81142 -18.56096 -18.30483 -17.81475 -17.16798 -17.08514 -16.71776 -16.46323 -16.10535 -15.94889 -15.61936 -15.41511 -15.17856 -15.00719 -14.62140 -14.41302 -14.33909 -14.23473 -13.76554 -13.67733 -13.39756 -13.28970 -13.01036 -12.94469 -12.91223 -12.81946 -12.61097 -12.46915 -12.26817 -12.03664 -11.95041 -11.76502 -11.73902 -11.61779 -11.43030 -11.04103 -10.94379 -10.85133 -10.54927 -10.08614 -9.70495 -8.99531 -7.95330 -5.29002 1.44108 1.45258 1.52363 1.55433 1.67870 1.96029 2.16952 2.47657 3.11047 3.23734 3.34944 3.54415 3.57105 3.66890 3.80909 3.87990 4.03017 4.09162 4.11982 4.21060 4.27836 4.29534 4.43289 4.45339 4.52344 4.64385 4.67268 4.68199 4.69497 4.75005 4.81961 4.83642 4.94003 4.98988 5.05457 5.10591 5.14165 5.18272 5.19514 5.26922 5.42568 5.44351 5.46885 5.68174 5.86140 6.42444 6.57711 6.87022 6.87293 7.16078 7.26992 7.54185 8.46952 9.21611 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.002789 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.415753 B =10036.865750 C =10094.916980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.503 3.497 3 O -0.600 6.600 4 N -0.609 5.609 5 C 0.094 3.906 6 C -0.127 4.127 7 C -0.099 4.099 8 C -0.109 4.109 9 H 0.108 0.892 10 C 0.520 3.480 11 O -0.563 6.563 12 N -0.708 5.708 13 C 0.155 3.845 14 C -0.087 4.087 15 C 0.094 3.906 16 O -0.591 6.591 17 C 0.170 3.830 18 N -0.631 5.631 19 C -0.236 4.236 20 H 0.081 0.919 21 C -0.060 4.060 22 N -0.947 5.947 23 Si 0.979 3.021 24 H -0.268 1.268 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.127 3.873 28 C 0.123 3.877 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.410 0.590 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.396 0.604 44 H 0.031 0.969 45 H 0.057 0.943 46 H 0.251 0.749 47 H 0.042 0.958 48 H 0.042 0.958 49 H 0.082 0.918 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.628 -6.736 8.716 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.295 3.705 3 O -0.481 6.481 4 N -0.342 5.342 5 C -0.026 4.026 6 C -0.165 4.165 7 C -0.137 4.137 8 C -0.131 4.131 9 H 0.126 0.874 10 C 0.306 3.694 11 O -0.441 6.441 12 N -0.360 5.360 13 C 0.067 3.933 14 C -0.126 4.126 15 C 0.017 3.983 16 O -0.399 6.399 17 C 0.045 3.955 18 N -0.358 5.358 19 C -0.365 4.365 20 H 0.099 0.901 21 C -0.254 4.254 22 N -0.596 5.596 23 Si 0.807 3.193 24 H -0.193 1.193 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.000 4.000 28 C -0.001 4.001 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.144 0.856 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.246 0.754 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.246 0.754 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.101 0.899 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.432 -7.290 8.276 27.720 hybrid contribution 1.200 1.198 -0.431 1.750 sum -24.231 -6.092 7.846 26.188 Atomic orbital electron populations 1.22077 0.88049 1.06801 1.06077 1.21697 0.92454 0.82300 0.74089 1.90724 1.71977 1.33003 1.52437 1.48275 1.06232 1.07487 1.72170 1.22282 0.98840 0.82046 0.99477 1.21935 0.93810 1.01577 0.99180 1.21352 0.96033 0.93402 1.02958 1.21674 0.89779 1.00058 1.01557 0.87447 1.20940 0.89748 0.83713 0.74962 1.90684 1.75885 1.27445 1.50073 1.46089 1.06117 1.10134 1.73652 1.22228 0.79279 0.98103 0.93664 1.21187 0.99762 0.99574 0.92076 1.21920 0.94885 0.96692 0.84850 1.86436 1.70516 1.61709 1.21268 1.22451 0.90065 0.90906 0.92124 1.45982 1.13770 1.13277 1.62722 1.19357 0.91068 0.99086 1.26948 0.90134 1.25588 1.02402 0.95634 1.01731 1.69962 1.38572 1.04144 1.46889 0.85005 0.79186 0.77642 0.77443 1.19267 1.21603 1.21730 1.22870 0.89596 0.93410 0.94080 1.21337 0.81552 1.00007 0.97197 0.86720 0.88191 0.87839 0.90048 0.85556 0.87767 0.90827 0.91695 0.91811 0.75381 0.91367 0.93035 0.93783 0.92437 0.75434 0.95119 0.92521 0.94025 0.93929 0.94019 0.89917 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.12 71.24 0.72 -0.52 16 2 C 0.50 8.87 7.80 87.66 0.68 9.55 16 3 O -0.60 -17.08 16.53 -3.05 -0.05 -17.13 16 4 N -0.61 -8.83 2.97 -818.89 -2.44 -11.27 16 5 C 0.09 0.63 6.36 86.36 0.55 1.18 16 6 C -0.13 -1.03 6.08 30.67 0.19 -0.84 16 7 C -0.10 -1.62 4.47 30.63 0.14 -1.48 16 8 C -0.11 -2.12 2.69 -11.45 -0.03 -2.15 16 9 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 10 C 0.52 14.67 6.83 87.66 0.60 15.27 16 11 O -0.56 -19.94 14.30 -3.02 -0.04 -19.99 16 12 N -0.71 -21.11 4.55 -427.57 -1.95 -23.05 16 13 C 0.15 6.03 0.67 5.36 0.00 6.03 16 14 C -0.09 -3.49 4.81 30.60 0.15 -3.34 16 15 C 0.09 3.12 6.77 71.98 0.49 3.60 16 16 O -0.59 -18.99 13.66 -148.98 -2.03 -21.02 16 17 C 0.17 8.01 6.65 86.44 0.57 8.59 16 18 N -0.63 -33.43 3.55 -715.56 -2.54 -35.97 16 19 C -0.24 -13.67 10.70 84.03 0.90 -12.77 16 20 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 21 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 22 N -0.95 -56.86 11.39 21.65 0.25 -56.61 16 23 Si 0.98 46.61 29.55 68.60 2.03 48.63 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 C 0.13 5.66 7.71 86.49 0.67 6.33 16 28 C 0.12 2.31 5.54 86.36 0.48 2.78 16 29 H 0.11 0.05 5.10 -2.39 -0.01 0.03 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.13 0.04 5.04 -2.39 -0.01 0.03 16 34 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 37 H 0.06 1.22 8.07 -2.38 -0.02 1.20 16 38 H 0.41 10.51 8.13 -92.71 -0.75 9.75 16 39 H 0.07 2.81 6.86 -2.39 -0.02 2.80 16 40 H 0.05 2.45 8.02 -2.39 -0.02 2.43 16 41 H 0.04 1.50 7.48 -2.38 -0.02 1.48 16 42 H 0.06 1.64 7.83 -2.39 -0.02 1.62 16 43 H 0.40 8.17 9.12 -74.05 -0.68 7.50 16 44 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 2.96 6.60 -2.39 -0.02 2.95 16 46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 47 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 48 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.08 1.83 6.54 -2.38 -0.02 1.81 16 50 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -81.66 394.94 -0.67 -82.33 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -0.46 Total: 24.84 kcal Atomic # 6 Polarization: 22.67 SS G_CDS: 6.57 Total: 29.24 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -6.68 Total: -126.90 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -2.13 Total: -58.14 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -81.66 -0.67 -82.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276062588.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.299 kcal (2) G-P(sol) polarization free energy of solvation -81.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds