Wall clock time and date at job start Sat Apr 11 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42904 * 109.46770 * 2 1 4 4 C 1.42894 * 113.99878 * 184.28681 * 3 2 1 5 5 H 1.09008 * 109.46983 * 30.17527 * 4 3 2 6 6 C 1.50700 * 109.47672 * 270.17872 * 4 3 2 7 7 O 1.21289 * 119.99555 * 359.97438 * 6 4 3 8 8 N 1.34770 * 120.00670 * 179.97438 * 6 4 3 9 9 C 1.46504 * 120.00309 * 179.97438 * 8 6 4 10 10 C 1.52999 * 109.46888 * 179.97438 * 9 8 6 11 11 H 1.08996 * 112.75071 * 284.22823 * 10 9 8 12 12 C 1.53519 * 113.52727 * 153.40612 * 10 9 8 13 13 C 1.53515 * 83.57552 * 219.20103 * 12 10 9 14 14 N 1.47481 * 87.93362 * 26.02660 * 13 12 10 15 15 C 1.46904 * 111.00201 * 221.30057 * 14 13 12 16 16 C 1.50703 * 109.46547 * 265.97047 * 15 14 13 17 17 O 1.21289 * 120.00221 * 359.97438 * 16 15 14 18 18 N 1.34772 * 119.99721 * 179.97438 * 16 15 14 19 19 C 1.37098 * 120.00206 * 179.97438 * 18 16 15 20 20 H 1.08010 * 119.99861 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00559 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99770 * 359.73266 * 21 19 18 23 23 Si 1.86800 * 120.00329 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46876 * 60.00480 * 23 21 19 25 25 H 1.48500 * 109.47126 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.47233 * 300.00549 * 23 21 19 27 27 C 1.53002 * 109.47430 * 150.17491 * 4 3 2 28 28 C 1.53001 * 117.49421 * 3.57615 * 27 4 3 29 29 C 1.52994 * 59.99899 * 252.51069 * 28 27 4 30 30 H 1.08994 * 109.46952 * 299.99729 * 1 2 3 31 31 H 1.09000 * 109.46858 * 60.00007 * 1 2 3 32 32 H 1.09003 * 109.46835 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47046 * 240.00965 * 2 1 3 34 34 H 1.08995 * 109.47218 * 120.00308 * 2 1 3 35 35 H 0.97005 * 119.99891 * 359.97438 * 8 6 4 36 36 H 1.09001 * 109.47040 * 59.99967 * 9 8 6 37 37 H 1.09001 * 109.46751 * 299.99654 * 9 8 6 38 38 H 1.08996 * 114.17335 * 332.85085 * 12 10 9 39 39 H 1.09001 * 114.16648 * 105.55700 * 12 10 9 40 40 H 1.09002 * 113.47491 * 271.26040 * 13 12 10 41 41 H 1.08995 * 113.47359 * 140.79208 * 13 12 10 42 42 H 1.08992 * 109.47105 * 145.96936 * 15 14 13 43 43 H 1.08997 * 109.46597 * 25.96232 * 15 14 13 44 44 H 0.97003 * 120.00427 * 359.97438 * 18 16 15 45 45 H 0.96997 * 120.00047 * 179.97438 * 22 21 19 46 46 H 1.08991 * 115.54885 * 149.28272 * 27 4 3 47 47 H 1.09001 * 117.49863 * 359.97438 * 28 27 4 48 48 H 1.08998 * 117.49721 * 145.01853 * 28 27 4 49 49 H 1.09000 * 117.49857 * 252.50655 * 29 28 27 50 50 H 1.09001 * 117.52021 * 107.48345 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4274 1.4614 -0.0976 5 1 3.8215 0.6180 -0.6646 6 6 4.0275 1.4618 1.2848 7 8 3.3089 1.3735 2.2578 8 7 5.3627 1.5601 1.4398 9 6 5.9460 1.5610 2.7837 10 6 7.4676 1.6818 2.6791 11 1 7.9442 0.7509 2.3721 12 6 8.1177 2.3237 3.9128 13 6 9.0125 3.0094 2.8708 14 7 7.9119 2.8536 1.9015 15 6 8.4230 2.4488 0.5851 16 6 8.6359 3.6721 -0.2689 17 8 8.3860 4.7728 0.1752 18 7 9.1040 3.5431 -1.5261 19 6 9.2972 4.6559 -2.3032 20 1 9.0747 5.6360 -1.9078 21 6 9.7803 4.5230 -3.5992 22 7 10.0570 3.3310 -4.0782 23 14 10.0428 6.0391 -4.6583 24 1 11.0242 6.9387 -4.0002 25 1 10.5603 5.6300 -5.9888 26 1 8.7524 6.7539 -4.8280 27 6 3.7865 2.7671 -0.8098 28 6 2.6379 3.7040 -1.1889 29 6 3.3683 2.9110 -2.2744 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 5.9375 1.6304 0.6616 36 1 5.6897 0.6312 3.2916 37 1 5.5522 2.4050 3.3501 38 1 7.4645 3.0051 4.4578 39 1 8.6430 1.6193 4.5579 40 1 9.9014 2.4327 2.6149 41 1 9.2378 4.0489 3.1086 42 1 7.7017 1.7897 0.1023 43 1 9.3697 1.9230 0.7090 44 1 9.3043 2.6629 -1.8812 45 1 10.3939 3.2381 -4.9831 46 1 4.7297 3.2228 -0.5085 47 1 1.6264 3.3900 -0.9313 48 1 2.8252 4.7765 -1.1370 49 1 4.0362 3.4618 -2.9368 50 1 2.8378 2.0753 -2.7308 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276854344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:38 Heat of formation + Delta-G solvation = -76.406310 kcal Electronic energy + Delta-G solvation = -30675.656380 eV Core-core repulsion = 26511.266463 eV Total energy + Delta-G solvation = -4164.389917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71588 -40.99244 -39.60832 -38.90456 -37.32456 -35.93078 -35.54814 -33.30237 -32.37468 -32.04339 -30.33690 -28.06502 -27.52117 -25.35633 -24.19272 -23.83681 -23.17005 -22.51903 -21.32052 -21.05563 -20.65694 -19.89165 -18.89871 -17.99852 -17.64943 -17.28050 -16.89107 -16.74579 -16.47612 -16.36663 -16.07715 -16.02783 -15.63667 -15.38206 -15.21753 -14.83808 -14.62177 -14.20171 -14.01728 -13.86853 -13.51490 -13.39832 -13.09734 -12.92654 -12.87540 -12.61527 -12.43773 -12.42966 -12.39848 -12.34603 -12.19580 -12.14534 -11.96470 -11.79513 -11.53416 -11.46268 -11.30488 -11.14079 -10.37376 -10.24744 -10.11302 -9.98159 -9.70549 -8.44800 -5.92500 1.39306 1.41980 1.44366 1.51646 1.98589 2.08592 2.29040 2.56960 2.81490 2.88081 3.21246 3.34460 3.51516 3.56228 3.70654 3.79881 3.87279 4.01436 4.09494 4.14131 4.15313 4.20648 4.26227 4.28582 4.33713 4.40168 4.43768 4.47115 4.51649 4.63888 4.77729 4.80371 4.83324 4.87131 4.95246 4.99826 5.03178 5.15213 5.21029 5.24976 5.28812 5.29957 5.42712 5.47800 5.94002 6.03334 6.12230 6.43919 6.63625 7.12835 7.16231 7.59708 8.16926 8.72085 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.003639 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.819165 B = 7693.609864 C =10207.081368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 O -0.369 6.369 4 C 0.113 3.887 5 H 0.114 0.886 6 C 0.493 3.507 7 O -0.570 6.570 8 N -0.712 5.712 9 C 0.140 3.860 10 C 0.015 3.985 11 H 0.111 0.889 12 C -0.114 4.114 13 C -0.003 4.003 14 N -0.469 5.469 15 C 0.020 3.980 16 C 0.443 3.557 17 O -0.618 6.618 18 N -0.573 5.573 19 C -0.330 4.330 20 H 0.074 0.926 21 C -0.008 4.008 22 N -0.917 5.917 23 Si 0.985 3.015 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.273 1.273 27 C -0.174 4.174 28 C -0.162 4.162 29 C -0.152 4.152 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.404 0.596 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.102 0.898 47 H 0.108 0.892 48 H 0.089 0.911 49 H 0.094 0.906 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.682 -12.682 7.778 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 O -0.287 6.287 4 C 0.052 3.948 5 H 0.131 0.869 6 C 0.279 3.721 7 O -0.449 6.449 8 N -0.365 5.365 9 C 0.016 3.984 10 C -0.094 4.094 11 H 0.129 0.871 12 C -0.152 4.152 13 C -0.132 4.132 14 N -0.192 5.192 15 C -0.112 4.112 16 C 0.230 3.770 17 O -0.503 6.503 18 N -0.211 5.211 19 C -0.460 4.460 20 H 0.092 0.908 21 C -0.208 4.208 22 N -0.558 5.558 23 Si 0.809 3.191 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.192 4.192 28 C -0.199 4.199 29 C -0.189 4.189 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.241 0.759 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.105 0.895 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.120 0.880 47 H 0.126 0.874 48 H 0.107 0.893 49 H 0.113 0.887 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.875 -11.369 8.412 17.840 hybrid contribution 1.479 -0.101 -1.092 1.841 sum -9.396 -11.471 7.319 16.536 Atomic orbital electron populations 1.21720 0.92340 1.03485 1.02648 1.22798 0.96904 0.82666 1.00574 1.87975 1.18372 1.28186 1.94180 1.21353 0.83160 0.99076 0.91208 0.86878 1.21616 0.82532 0.75487 0.92436 1.90657 1.61125 1.50885 1.42235 1.46000 1.06736 1.73529 1.10267 1.21387 0.91514 1.01927 0.83566 1.23851 0.94592 0.95136 0.95830 0.87100 1.23098 0.97727 0.99495 0.94888 1.23847 0.94414 1.01854 0.93109 1.68828 1.23439 1.27771 0.99173 1.22458 1.01738 0.94460 0.92519 1.20721 0.82153 0.91272 0.82815 1.90514 1.56585 1.29561 1.73685 1.41900 1.58054 1.09341 1.11767 1.19537 1.42671 0.88432 0.95379 0.90788 1.25892 0.96346 1.00660 0.97860 1.69643 1.44826 1.23217 1.18142 0.85111 0.78658 0.77913 0.77426 1.20024 1.19431 1.19868 1.22232 1.00416 0.97213 0.99381 1.22858 0.97300 0.97022 1.02715 1.22994 1.02844 1.03273 0.89786 0.93061 0.91521 0.88896 0.91242 0.94057 0.75942 0.89768 0.92843 0.89156 0.86957 0.89736 0.91785 0.87902 0.89514 0.76993 0.91350 0.87981 0.87418 0.89297 0.88722 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 10.28 71.98 0.74 -1.62 16 2 C 0.05 0.93 6.48 71.98 0.47 1.39 16 3 O -0.37 -9.60 7.89 -129.94 -1.03 -10.62 16 4 C 0.11 2.85 2.87 29.85 0.09 2.93 16 5 H 0.11 2.21 7.73 -2.38 -0.02 2.19 16 6 C 0.49 14.40 7.17 87.66 0.63 15.03 16 7 O -0.57 -20.54 16.47 15.98 0.26 -20.27 16 8 N -0.71 -18.18 5.21 -463.05 -2.41 -20.59 16 9 C 0.14 3.24 5.82 86.38 0.50 3.74 16 10 C 0.02 0.31 3.23 42.19 0.14 0.44 16 11 H 0.11 1.66 7.91 -2.39 -0.02 1.64 16 12 C -0.11 -2.03 8.00 30.94 0.25 -1.78 16 13 C 0.00 -0.09 7.71 83.58 0.64 0.56 16 14 N -0.47 -13.69 5.39 -906.59 -4.88 -18.57 16 15 C 0.02 0.62 5.05 85.56 0.43 1.05 16 16 C 0.44 20.14 7.85 87.66 0.69 20.83 16 17 O -0.62 -33.96 16.01 -3.06 -0.05 -34.01 16 18 N -0.57 -28.01 5.29 -306.98 -1.62 -29.63 16 19 C -0.33 -18.29 9.68 84.04 0.81 -17.48 16 20 H 0.07 4.43 7.16 -2.91 -0.02 4.41 16 21 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 22 N -0.92 -47.78 13.05 21.66 0.28 -47.50 16 23 Si 0.98 42.22 29.55 68.60 2.03 44.25 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 C -0.17 -4.74 5.62 -10.79 -0.06 -4.80 16 28 C -0.16 -4.29 9.87 30.59 0.30 -3.99 16 29 C -0.15 -3.67 10.24 30.59 0.31 -3.36 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.06 7.99 -2.39 -0.02 1.04 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.40 9.84 5.89 -92.70 -0.55 9.29 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.47 7.88 -2.39 -0.02 1.45 16 38 H 0.09 1.74 7.94 -2.39 -0.02 1.72 16 39 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.81 7.42 -2.39 -0.02 1.79 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.10 2.65 6.26 -2.39 -0.01 2.64 16 43 H 0.09 2.26 7.30 -2.39 -0.02 2.24 16 44 H 0.40 18.17 7.90 -92.71 -0.73 17.44 16 45 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 46 H 0.10 3.24 7.64 -2.39 -0.02 3.22 16 47 H 0.11 2.81 7.02 -2.39 -0.02 2.79 16 48 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -74.27 411.29 -1.34 -75.60 By element: Atomic # 1 Polarization: 48.64 SS G_CDS: -0.32 Total: 48.32 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 6.41 Total: 13.02 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -8.64 Total: -116.29 kcal Atomic # 8 Polarization: -64.09 SS G_CDS: -0.81 Total: -64.90 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -74.27 -1.34 -75.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276854344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.802 kcal (2) G-P(sol) polarization free energy of solvation -74.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds