Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46499 * 120.00290 * 2 1 4 4 C 1.52999 * 109.47140 * 89.99990 * 3 2 1 5 5 H 1.08998 * 109.47200 * 304.99825 * 4 3 2 6 6 O 1.42900 * 109.47027 * 65.00162 * 4 3 2 7 7 C 1.53001 * 109.46888 * 185.00148 * 4 3 2 8 8 C 1.52997 * 117.49887 * 248.74710 * 7 4 3 9 9 C 1.52996 * 117.50002 * 180.08606 * 7 4 3 10 10 C 1.34781 * 119.99708 * 180.02562 * 2 1 3 11 11 O 1.21351 * 119.99791 * 185.17781 * 10 2 1 12 12 C 1.49447 * 120.00416 * 5.17528 * 10 2 1 13 13 O 1.21350 * 119.99445 * 4.72385 * 12 10 2 14 14 N 1.34769 * 120.00225 * 184.71971 * 12 10 2 15 15 C 1.47085 * 120.88067 * 172.66802 * 14 12 10 16 16 C 1.53697 * 108.27488 * 128.75653 * 15 14 12 17 17 N 1.46899 * 109.25976 * 54.08364 * 16 15 14 18 18 C 1.46894 * 111.00025 * 172.60816 * 17 16 15 19 19 C 1.50698 * 109.47235 * 294.29627 * 18 17 16 20 20 H 1.08004 * 119.99826 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00362 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00067 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00414 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47081 * 59.99769 * 23 21 19 25 25 H 1.48496 * 109.47424 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46983 * 300.00358 * 23 21 19 27 27 C 1.46899 * 111.26673 * 296.75721 * 17 16 15 28 28 C 1.47075 * 120.88278 * 352.94573 * 14 12 10 29 29 H 1.09003 * 109.47262 * 96.01022 * 1 2 3 30 30 H 1.09004 * 109.47326 * 216.00814 * 1 2 3 31 31 H 1.08995 * 109.47157 * 336.00713 * 1 2 3 32 32 H 1.09001 * 109.46890 * 329.99694 * 3 2 1 33 33 H 1.09005 * 109.47199 * 210.00451 * 3 2 1 34 34 H 0.96700 * 113.99974 * 60.00308 * 6 4 3 35 35 H 1.09000 * 115.55047 * 34.41201 * 7 4 3 36 36 H 1.09006 * 117.49952 * 0.02562 * 8 7 4 37 37 H 1.09001 * 117.50387 * 145.02110 * 8 7 4 38 38 H 1.08995 * 117.50346 * 214.97612 * 9 7 4 39 39 H 1.09000 * 117.49892 * 359.97438 * 9 7 4 40 40 H 1.08997 * 109.63060 * 248.51983 * 15 14 12 41 41 H 1.09003 * 109.62821 * 9.10613 * 15 14 12 42 42 H 1.09005 * 109.64832 * 294.07719 * 16 15 14 43 43 H 1.09000 * 109.42112 * 173.95166 * 16 15 14 44 44 H 1.09001 * 109.47868 * 54.30157 * 18 17 16 45 45 H 1.08999 * 109.47291 * 174.30339 * 18 17 16 46 46 H 0.96994 * 120.00419 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.49272 * 303.14206 * 27 17 16 48 48 H 1.09004 * 109.49397 * 183.06635 * 27 17 16 49 49 H 1.08996 * 109.63357 * 350.89991 * 28 14 12 50 50 H 1.09003 * 109.62701 * 111.47544 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 1 1.5062 1.7549 1.9815 6 8 3.3209 0.7724 2.0813 7 6 3.1061 3.0937 1.4443 8 6 4.5637 3.1858 1.9000 9 6 3.4447 3.7134 2.8015 10 6 2.1388 -1.1673 -0.0005 11 8 3.3486 -1.1695 0.0943 12 6 1.3961 -2.4589 -0.1178 13 8 0.1962 -2.4544 -0.2987 14 7 2.0590 -3.6284 -0.0229 15 6 1.3324 -4.9063 0.0252 16 6 1.9314 -5.8416 -1.0372 17 7 3.3820 -5.9445 -0.8297 18 6 3.9689 -6.9626 -1.7110 19 6 3.4469 -8.3225 -1.3250 20 1 2.7485 -8.4206 -0.5069 21 6 3.8599 -9.4414 -2.0166 22 7 4.7099 -9.3220 -3.0131 23 14 3.2123 -11.1271 -1.5386 24 1 1.7337 -11.1463 -1.6753 25 1 3.8047 -12.1562 -2.4302 26 1 3.5829 -11.4186 -0.1304 27 6 4.0403 -4.6445 -1.0155 28 6 3.5280 -3.6604 0.0415 29 1 -0.3634 -0.1076 -1.0220 30 1 -0.3634 -0.8313 0.6042 31 1 -0.3633 0.9388 0.4178 32 1 1.6084 2.0283 -0.5139 33 1 3.1499 1.1383 -0.5139 34 1 4.1836 0.6810 1.6542 35 1 2.7837 3.7670 0.6500 36 1 5.0572 2.2608 2.1983 37 1 5.2002 3.9200 1.4060 38 1 3.3455 4.7943 2.9002 39 1 3.2015 3.1357 3.6933 40 1 1.4414 -5.3526 1.0136 41 1 0.2771 -4.7357 -0.1884 42 1 1.7336 -5.4411 -2.0316 43 1 1.4800 -6.8296 -0.9463 44 1 3.6970 -6.7490 -2.7447 45 1 5.0542 -6.9482 -1.6105 46 1 5.0008 -10.1092 -3.4995 47 1 3.8133 -4.2607 -2.0102 48 1 5.1185 -4.7642 -0.9089 49 1 3.9253 -2.6659 -0.1611 50 1 3.8440 -3.9892 1.0316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601472567.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -49.739538 kcal Electronic energy + Delta-G solvation = -30594.203392 eV Core-core repulsion = 26430.969832 eV Total energy + Delta-G solvation = -4163.233559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08410 -39.47236 -38.43581 -37.64570 -36.13221 -35.11939 -34.19658 -32.36677 -30.76151 -30.30841 -28.48907 -27.11967 -25.97149 -25.03043 -23.56425 -22.85321 -22.44512 -21.59060 -20.90399 -20.24718 -19.01870 -17.48813 -17.12383 -16.88470 -16.74395 -16.34827 -16.01669 -15.85935 -15.24410 -14.79247 -14.70981 -14.50743 -14.39650 -14.04768 -14.02364 -13.64911 -13.50169 -13.16692 -12.99813 -12.88066 -12.59578 -12.36548 -12.17871 -11.98298 -11.88755 -11.66388 -11.34542 -11.21703 -10.92176 -10.90013 -10.76197 -10.70480 -10.62053 -10.53003 -10.51693 -10.40649 -9.86226 -9.33401 -9.02022 -8.84888 -8.51725 -8.42417 -7.28556 -6.03789 -4.05713 1.41858 2.20438 3.18087 3.29272 3.33280 3.34962 3.37406 3.40321 4.00802 4.15737 4.24151 4.41519 4.43138 4.50587 4.68941 4.75412 4.87744 4.90685 4.96517 5.13279 5.26233 5.31477 5.36749 5.42269 5.46421 5.48216 5.56722 5.64414 5.68770 5.71378 5.74531 5.76035 5.86260 5.93649 5.96969 6.31273 6.32810 6.47232 6.52776 6.64004 6.82587 7.25248 7.31055 7.38455 7.40620 7.67194 7.77015 8.00995 8.05023 8.15593 8.51107 9.01210 9.58597 11.06942 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024967 B = 0.002221 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.229101 B =12603.219788 C =13246.612027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.586 5.586 3 C 0.085 3.915 4 C 0.122 3.878 5 H 0.102 0.898 6 O -0.549 6.549 7 C -0.194 4.194 8 C -0.175 4.175 9 C -0.168 4.168 10 C 0.518 3.482 11 O -0.505 6.505 12 C 0.503 3.497 13 O -0.531 6.531 14 N -0.570 5.570 15 C 0.110 3.890 16 C 0.053 3.947 17 N -0.537 5.537 18 C 0.194 3.806 19 C -0.510 4.510 20 H 0.063 0.937 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.276 1.276 27 C 0.042 3.958 28 C 0.066 3.934 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.379 0.621 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.025 0.975 43 H 0.098 0.902 44 H -0.009 1.009 45 H 0.032 0.968 46 H 0.262 0.738 47 H 0.024 0.976 48 H 0.082 0.918 49 H 0.145 0.855 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.343 27.087 7.766 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.319 5.319 3 C -0.038 4.038 4 C 0.061 3.939 5 H 0.119 0.881 6 O -0.355 6.355 7 C -0.213 4.213 8 C -0.212 4.212 9 C -0.205 4.205 10 C 0.302 3.698 11 O -0.382 6.382 12 C 0.285 3.715 13 O -0.410 6.410 14 N -0.302 5.302 15 C -0.012 4.012 16 C -0.076 4.076 17 N -0.263 5.263 18 C 0.069 3.931 19 C -0.548 4.548 20 H 0.081 0.919 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.727 3.273 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.201 1.201 27 C -0.087 4.087 28 C -0.056 4.056 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.229 0.771 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.043 0.957 43 H 0.116 0.884 44 H 0.008 0.992 45 H 0.050 0.950 46 H 0.072 0.928 47 H 0.042 0.958 48 H 0.100 0.900 49 H 0.162 0.838 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.661 26.738 8.447 28.606 hybrid contribution 0.028 -0.645 -1.169 1.335 sum -5.633 26.093 7.279 27.669 Atomic orbital electron populations 1.22177 0.77514 1.03253 1.03458 1.47577 1.08088 1.04833 1.71377 1.22322 0.98758 0.84966 0.97795 1.21783 0.93732 0.85680 0.92688 0.88064 1.86596 1.29847 1.62518 1.56586 1.23066 0.99551 0.99078 0.99624 1.22979 0.90870 1.03580 1.03801 1.22910 1.03118 1.00433 0.94068 1.20274 0.87355 0.85178 0.77025 1.90347 1.13955 1.85286 1.48604 1.19864 0.87261 0.85080 0.79271 1.90685 1.14315 1.86846 1.49149 1.48159 1.08932 1.05199 1.67927 1.22140 0.96517 0.81681 1.00813 1.22395 0.90446 0.99678 0.95119 1.62112 1.02131 1.05363 1.56666 1.19717 0.95251 0.88915 0.89238 1.21109 1.26750 0.90785 1.16163 0.91862 1.24999 0.95234 0.99369 0.95021 1.69947 1.32650 1.29953 1.21195 0.86544 0.79031 0.83327 0.78400 1.20272 1.21391 1.20132 1.22417 0.99595 0.90551 0.96140 1.23257 0.77349 1.04620 1.00343 0.91841 0.88703 0.91737 0.89137 0.89062 0.77099 0.87156 0.88017 0.88716 0.88898 0.88373 0.90320 0.89200 0.95690 0.88386 0.99164 0.95010 0.92843 0.95820 0.90003 0.83843 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 9.23 59.84 0.55 1.24 16 2 N -0.59 -5.96 2.86 -182.09 -0.52 -6.48 16 3 C 0.08 0.63 5.05 -4.04 -0.02 0.61 16 4 C 0.12 0.90 3.57 -26.73 -0.10 0.80 16 5 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 6 O -0.55 -5.45 11.22 -48.31 -0.54 -5.99 16 7 C -0.19 -1.13 5.70 -90.62 -0.52 -1.65 16 8 C -0.18 -1.05 9.74 -26.70 -0.26 -1.31 16 9 C -0.17 -1.03 10.19 -26.70 -0.27 -1.30 16 10 C 0.52 6.84 7.35 -11.58 -0.09 6.76 16 11 O -0.51 -6.97 11.31 -7.58 -0.09 -7.05 16 12 C 0.50 7.66 7.59 -11.59 -0.09 7.57 16 13 O -0.53 -8.48 12.81 5.50 0.07 -8.41 16 14 N -0.57 -9.18 3.00 -172.69 -0.52 -9.70 16 15 C 0.11 1.82 6.65 -3.36 -0.02 1.80 16 16 C 0.05 1.03 5.47 -3.46 -0.02 1.01 16 17 N -0.54 -11.59 4.62 -235.47 -1.09 -12.68 16 18 C 0.19 5.04 4.72 -4.98 -0.02 5.01 16 19 C -0.51 -14.16 8.41 -34.44 -0.29 -14.45 16 20 H 0.06 1.72 7.13 -52.48 -0.37 1.35 16 21 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 23 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.04 0.78 5.62 -3.70 -0.02 0.76 16 28 C 0.07 1.04 6.27 -3.61 -0.02 1.02 16 29 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.09 1.02 5.96 -51.93 -0.31 0.71 16 31 H 0.06 0.38 8.03 -51.93 -0.42 -0.04 16 32 H 0.09 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.09 0.73 7.50 -51.93 -0.39 0.35 16 34 H 0.38 3.31 7.14 45.56 0.33 3.63 16 35 H 0.11 0.50 8.11 -51.93 -0.42 0.08 16 36 H 0.10 0.65 6.37 -51.93 -0.33 0.32 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.09 1.41 7.04 -51.93 -0.37 1.04 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 2.02 6.67 -51.93 -0.35 1.67 16 44 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 45 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 1.46 7.99 -51.93 -0.41 1.05 16 49 H 0.15 2.18 4.08 -56.02 -0.23 1.95 16 50 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -31.83 392.73 -9.80 -41.63 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.46 Total: 2.80 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -1.28 Total: 9.33 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -1.39 Total: -54.76 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.56 Total: -21.45 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.83 -9.80 -41.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601472567.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.114 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds