Wall clock time and date at job start Sat Apr 11 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46499 * 120.00290 * 2 1 4 4 C 1.52999 * 109.47140 * 89.99990 * 3 2 1 5 5 H 1.08998 * 109.47200 * 304.99825 * 4 3 2 6 6 O 1.42900 * 109.47027 * 65.00162 * 4 3 2 7 7 C 1.53001 * 109.46888 * 185.00148 * 4 3 2 8 8 C 1.52997 * 117.49887 * 248.74710 * 7 4 3 9 9 C 1.52996 * 117.50002 * 180.08606 * 7 4 3 10 10 C 1.34781 * 119.99708 * 180.02562 * 2 1 3 11 11 O 1.21351 * 119.99791 * 185.17781 * 10 2 1 12 12 C 1.49447 * 120.00416 * 5.17528 * 10 2 1 13 13 O 1.21350 * 119.99445 * 4.72385 * 12 10 2 14 14 N 1.34769 * 120.00225 * 184.71971 * 12 10 2 15 15 C 1.47085 * 120.88067 * 172.66802 * 14 12 10 16 16 C 1.53697 * 108.27488 * 128.75653 * 15 14 12 17 17 N 1.46899 * 109.25976 * 54.08364 * 16 15 14 18 18 C 1.46894 * 111.00025 * 172.60816 * 17 16 15 19 19 C 1.50698 * 109.47235 * 294.29627 * 18 17 16 20 20 H 1.08004 * 119.99826 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00362 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00067 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00414 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47081 * 59.99769 * 23 21 19 25 25 H 1.48496 * 109.47424 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46983 * 300.00358 * 23 21 19 27 27 C 1.46899 * 111.26673 * 296.75721 * 17 16 15 28 28 C 1.47075 * 120.88278 * 352.94573 * 14 12 10 29 29 H 1.09003 * 109.47262 * 96.01022 * 1 2 3 30 30 H 1.09004 * 109.47326 * 216.00814 * 1 2 3 31 31 H 1.08995 * 109.47157 * 336.00713 * 1 2 3 32 32 H 1.09001 * 109.46890 * 329.99694 * 3 2 1 33 33 H 1.09005 * 109.47199 * 210.00451 * 3 2 1 34 34 H 0.96700 * 113.99974 * 60.00308 * 6 4 3 35 35 H 1.09000 * 115.55047 * 34.41201 * 7 4 3 36 36 H 1.09006 * 117.49952 * 0.02562 * 8 7 4 37 37 H 1.09001 * 117.50387 * 145.02110 * 8 7 4 38 38 H 1.08995 * 117.50346 * 214.97612 * 9 7 4 39 39 H 1.09000 * 117.49892 * 359.97438 * 9 7 4 40 40 H 1.08997 * 109.63060 * 248.51983 * 15 14 12 41 41 H 1.09003 * 109.62821 * 9.10613 * 15 14 12 42 42 H 1.09005 * 109.64832 * 294.07719 * 16 15 14 43 43 H 1.09000 * 109.42112 * 173.95166 * 16 15 14 44 44 H 1.09001 * 109.47868 * 54.30157 * 18 17 16 45 45 H 1.08999 * 109.47291 * 174.30339 * 18 17 16 46 46 H 0.96994 * 120.00419 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.49272 * 303.14206 * 27 17 16 48 48 H 1.09004 * 109.49397 * 183.06635 * 27 17 16 49 49 H 1.08996 * 109.63357 * 350.89991 * 28 14 12 50 50 H 1.09003 * 109.62701 * 111.47544 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 1 1.5062 1.7549 1.9815 6 8 3.3209 0.7724 2.0813 7 6 3.1061 3.0937 1.4443 8 6 4.5637 3.1858 1.9000 9 6 3.4447 3.7134 2.8015 10 6 2.1388 -1.1673 -0.0005 11 8 3.3486 -1.1695 0.0943 12 6 1.3961 -2.4589 -0.1178 13 8 0.1962 -2.4544 -0.2987 14 7 2.0590 -3.6284 -0.0229 15 6 1.3324 -4.9063 0.0252 16 6 1.9314 -5.8416 -1.0372 17 7 3.3820 -5.9445 -0.8297 18 6 3.9689 -6.9626 -1.7110 19 6 3.4469 -8.3225 -1.3250 20 1 2.7485 -8.4206 -0.5069 21 6 3.8599 -9.4414 -2.0166 22 7 4.7099 -9.3220 -3.0131 23 14 3.2123 -11.1271 -1.5386 24 1 1.7337 -11.1463 -1.6753 25 1 3.8047 -12.1562 -2.4302 26 1 3.5829 -11.4186 -0.1304 27 6 4.0403 -4.6445 -1.0155 28 6 3.5280 -3.6604 0.0415 29 1 -0.3634 -0.1076 -1.0220 30 1 -0.3634 -0.8313 0.6042 31 1 -0.3633 0.9388 0.4178 32 1 1.6084 2.0283 -0.5139 33 1 3.1499 1.1383 -0.5139 34 1 4.1836 0.6810 1.6542 35 1 2.7837 3.7670 0.6500 36 1 5.0572 2.2608 2.1983 37 1 5.2002 3.9200 1.4060 38 1 3.3455 4.7943 2.9002 39 1 3.2015 3.1357 3.6933 40 1 1.4414 -5.3526 1.0136 41 1 0.2771 -4.7357 -0.1884 42 1 1.7336 -5.4411 -2.0316 43 1 1.4800 -6.8296 -0.9463 44 1 3.6970 -6.7490 -2.7447 45 1 5.0542 -6.9482 -1.6105 46 1 5.0008 -10.1092 -3.4995 47 1 3.8133 -4.2607 -2.0102 48 1 5.1185 -4.7642 -0.9089 49 1 3.9253 -2.6659 -0.1611 50 1 3.8440 -3.9892 1.0316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601472567.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:34 Heat of formation + Delta-G solvation = -72.270445 kcal Electronic energy + Delta-G solvation = -30595.180405 eV Core-core repulsion = 26430.969832 eV Total energy + Delta-G solvation = -4164.210573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.15790 -40.38599 -39.37917 -38.97919 -37.09392 -35.90964 -35.57891 -34.36197 -32.18903 -31.00757 -30.20867 -28.11164 -27.34720 -26.25772 -24.82920 -23.99050 -23.35724 -23.04117 -21.53117 -21.40760 -20.24971 -18.58420 -18.36446 -18.13994 -17.75128 -17.47974 -17.13647 -16.68729 -16.62726 -16.10269 -16.05115 -15.80553 -15.51788 -15.39377 -15.22207 -14.96404 -14.64881 -14.21824 -14.08792 -14.00808 -13.68801 -13.54839 -13.36121 -13.12710 -12.82383 -12.78063 -12.69641 -12.55021 -12.36271 -12.34260 -12.24830 -12.23040 -11.85336 -11.64114 -11.39971 -11.34114 -11.17650 -11.01507 -10.62239 -10.06496 -9.95793 -9.66020 -9.08898 -8.20797 -6.31322 0.31449 1.21081 1.42192 1.45405 1.53175 2.07723 2.27661 2.40883 2.85049 3.05677 3.11105 3.23845 3.45786 3.71011 3.92806 3.94483 4.01159 4.02548 4.14000 4.19205 4.21917 4.31253 4.35142 4.40205 4.42758 4.53948 4.58998 4.72266 4.80310 4.81707 4.83389 4.89829 4.97326 5.00703 5.03423 5.05047 5.12361 5.20822 5.24762 5.27517 5.29437 5.47110 5.62674 5.88212 6.01371 6.13343 6.26713 6.55114 6.59290 6.78090 6.83598 6.89512 7.38328 8.90200 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024967 B = 0.002221 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.229101 B =12603.219788 C =13246.612027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.576 5.576 3 C 0.083 3.917 4 C 0.123 3.877 5 H 0.101 0.899 6 O -0.570 6.570 7 C -0.185 4.185 8 C -0.180 4.180 9 C -0.173 4.173 10 C 0.513 3.487 11 O -0.516 6.516 12 C 0.500 3.500 13 O -0.539 6.539 14 N -0.580 5.580 15 C 0.122 3.878 16 C 0.056 3.944 17 N -0.541 5.541 18 C 0.209 3.791 19 C -0.524 4.524 20 H 0.067 0.933 21 C 0.000 4.000 22 N -0.935 5.935 23 Si 0.972 3.028 24 H -0.267 1.267 25 H -0.285 1.285 26 H -0.267 1.267 27 C 0.042 3.958 28 C 0.081 3.919 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.382 0.618 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.012 0.988 43 H 0.085 0.915 44 H -0.041 1.041 45 H 0.008 0.992 46 H 0.264 0.736 47 H 0.015 0.985 48 H 0.084 0.916 49 H 0.158 0.842 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.556 28.815 8.669 30.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.308 5.308 3 C -0.038 4.038 4 C 0.062 3.938 5 H 0.119 0.881 6 O -0.378 6.378 7 C -0.204 4.204 8 C -0.217 4.217 9 C -0.210 4.210 10 C 0.296 3.704 11 O -0.394 6.394 12 C 0.283 3.717 13 O -0.418 6.418 14 N -0.313 5.313 15 C 0.000 4.000 16 C -0.073 4.073 17 N -0.266 5.266 18 C 0.082 3.918 19 C -0.562 4.562 20 H 0.085 0.915 21 C -0.198 4.198 22 N -0.575 5.575 23 Si 0.796 3.204 24 H -0.192 1.192 25 H -0.210 1.210 26 H -0.192 1.192 27 C -0.087 4.087 28 C -0.040 4.040 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.142 0.858 33 H 0.105 0.895 34 H 0.232 0.768 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.030 0.970 43 H 0.103 0.897 44 H -0.024 1.024 45 H 0.026 0.974 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.102 0.898 49 H 0.174 0.826 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.905 28.523 9.365 30.805 hybrid contribution 0.368 -1.062 -1.460 1.842 sum -6.537 27.461 7.906 29.315 Atomic orbital electron populations 1.22241 0.76550 1.04412 1.03323 1.47683 1.08795 1.04780 1.69502 1.22559 0.98948 0.84173 0.98144 1.21838 0.93477 0.86111 0.92333 0.88129 1.86572 1.30351 1.63447 1.57408 1.23043 0.99110 0.98326 0.99944 1.23024 0.91177 1.03531 1.03995 1.22933 1.03321 1.01003 0.93747 1.19931 0.87204 0.85310 0.77948 1.90314 1.14122 1.85254 1.49729 1.20323 0.87324 0.85605 0.78445 1.90684 1.14769 1.87171 1.49148 1.48205 1.08905 1.05460 1.68712 1.21958 0.96734 0.81457 0.99851 1.22360 0.89234 0.99926 0.95746 1.62054 1.03307 1.06094 1.55118 1.19375 0.93932 0.90169 0.88278 1.21424 1.26826 0.91705 1.16274 0.91493 1.25946 0.95329 1.03687 0.94818 1.70083 1.33893 1.31203 1.22325 0.85401 0.78750 0.77967 0.78288 1.19162 1.21026 1.19215 1.22507 0.99761 0.89572 0.96831 1.23172 0.77379 1.04200 0.99272 0.91863 0.90712 0.88139 0.85789 0.89507 0.76798 0.85140 0.88871 0.87708 0.87663 0.89735 0.89471 0.88168 0.97009 0.89654 1.02377 0.97402 0.92687 0.96673 0.89750 0.82599 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 9.23 127.77 1.18 2.34 16 2 N -0.58 -10.44 2.86 -848.35 -2.42 -12.86 16 3 C 0.08 1.00 5.05 86.38 0.44 1.43 16 4 C 0.12 1.53 3.57 30.59 0.11 1.64 16 5 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 6 O -0.57 -10.68 11.22 -136.48 -1.53 -12.21 16 7 C -0.19 -1.68 5.70 -10.80 -0.06 -1.75 16 8 C -0.18 -1.86 9.74 30.62 0.30 -1.57 16 9 C -0.17 -1.81 10.19 30.62 0.31 -1.50 16 10 C 0.51 12.86 7.35 87.27 0.64 13.50 16 11 O -0.52 -13.63 11.31 9.25 0.10 -13.52 16 12 C 0.50 14.74 7.59 87.27 0.66 15.40 16 13 O -0.54 -16.64 12.81 -3.25 -0.04 -16.68 16 14 N -0.58 -18.32 3.00 -818.64 -2.46 -20.78 16 15 C 0.12 3.96 6.65 86.50 0.57 4.54 16 16 C 0.06 2.25 5.47 86.54 0.47 2.72 16 17 N -0.54 -23.91 4.62 -898.89 -4.15 -28.06 16 18 C 0.21 11.30 4.72 85.56 0.40 11.71 16 19 C -0.52 -29.71 8.41 25.60 0.22 -29.49 16 20 H 0.07 3.67 7.13 -2.91 -0.02 3.65 16 21 C 0.00 0.02 5.46 84.65 0.46 0.48 16 22 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 23 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 27 C 0.04 1.58 5.62 86.38 0.49 2.07 16 28 C 0.08 2.53 6.27 86.35 0.54 3.07 16 29 H 0.06 0.99 8.10 -2.39 -0.02 0.98 16 30 H 0.07 1.49 5.96 -2.38 -0.01 1.48 16 31 H 0.10 0.81 8.03 -2.39 -0.02 0.80 16 32 H 0.12 0.70 8.07 -2.39 -0.02 0.68 16 33 H 0.09 1.19 7.50 -2.38 -0.02 1.17 16 34 H 0.38 6.39 7.14 -74.06 -0.53 5.86 16 35 H 0.13 0.69 8.11 -2.39 -0.02 0.67 16 36 H 0.09 1.12 6.37 -2.38 -0.02 1.11 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 2.69 8.14 -2.39 -0.02 2.68 16 41 H 0.10 3.06 7.04 -2.39 -0.02 3.04 16 42 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 43 H 0.09 3.59 6.67 -2.39 -0.02 3.58 16 44 H -0.04 -2.47 8.12 -2.39 -0.02 -2.48 16 45 H 0.01 0.46 7.97 -2.39 -0.02 0.44 16 46 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.08 3.09 7.99 -2.38 -0.02 3.07 16 49 H 0.16 4.62 4.08 -67.07 -0.27 4.35 16 50 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -69.56 392.73 -1.30 -70.86 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.16 Total: 18.69 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 6.73 Total: 24.59 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -8.75 Total: -118.08 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.47 Total: -42.41 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -69.56 -1.30 -70.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601472567.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.407 kcal (2) G-P(sol) polarization free energy of solvation -69.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds