Wall clock time and date at job start Sat Apr 11 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99711 * 2 1 4 4 C 1.53008 * 109.47175 * 269.99931 * 3 2 1 5 5 H 1.09003 * 109.47093 * 60.00241 * 4 3 2 6 6 O 1.42901 * 109.47190 * 300.00139 * 4 3 2 7 7 C 1.52995 * 109.46775 * 179.97438 * 4 3 2 8 8 C 1.53004 * 117.50089 * 248.74470 * 7 4 3 9 9 C 1.53002 * 117.49602 * 180.08657 * 7 4 3 10 10 C 1.34768 * 120.00078 * 180.02562 * 2 1 3 11 11 O 1.21351 * 120.00055 * 185.05166 * 10 2 1 12 12 C 1.49456 * 120.00203 * 5.05558 * 10 2 1 13 13 O 1.21344 * 119.99918 * 84.52655 * 12 10 2 14 14 N 1.34769 * 119.99673 * 264.80553 * 12 10 2 15 15 C 1.47079 * 120.88468 * 4.49613 * 14 12 10 16 16 C 1.53694 * 108.27840 * 128.75115 * 15 14 12 17 17 N 1.46902 * 109.25427 * 54.09069 * 16 15 14 18 18 C 1.46900 * 110.99837 * 172.60877 * 17 16 15 19 19 C 1.50693 * 109.47095 * 294.29535 * 18 17 16 20 20 H 1.07998 * 120.00020 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00227 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00144 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47085 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47304 * 119.99513 * 23 21 19 26 26 H 1.48499 * 109.47165 * 239.99374 * 23 21 19 27 27 C 1.46907 * 111.26337 * 296.75158 * 17 16 15 28 28 C 1.47079 * 120.88362 * 184.77470 * 14 12 10 29 29 H 1.08995 * 109.47022 * 264.80874 * 1 2 3 30 30 H 1.09004 * 109.46803 * 24.81113 * 1 2 3 31 31 H 1.09001 * 109.47146 * 144.80552 * 1 2 3 32 32 H 1.08997 * 109.47193 * 29.99881 * 3 2 1 33 33 H 1.08996 * 109.46850 * 150.00464 * 3 2 1 34 34 H 0.96698 * 113.99623 * 300.00247 * 6 4 3 35 35 H 1.08995 * 115.55556 * 34.42208 * 7 4 3 36 36 H 1.08999 * 117.49798 * 0.02562 * 8 7 4 37 37 H 1.08996 * 117.49885 * 145.02392 * 8 7 4 38 38 H 1.08997 * 117.50377 * 214.98270 * 9 7 4 39 39 H 1.09000 * 117.49890 * 0.02562 * 9 7 4 40 40 H 1.08999 * 109.63284 * 248.52272 * 15 14 12 41 41 H 1.09008 * 109.62700 * 9.10451 * 15 14 12 42 42 H 1.08997 * 109.65267 * 294.08504 * 16 15 14 43 43 H 1.09006 * 109.42284 * 173.94777 * 16 15 14 44 44 H 1.08999 * 109.47658 * 54.29908 * 18 17 16 45 45 H 1.09008 * 109.47089 * 174.29891 * 18 17 16 46 46 H 0.97003 * 120.00076 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.49193 * 303.14627 * 27 17 16 48 48 H 1.09000 * 109.48823 * 183.06505 * 27 17 16 49 49 H 1.09001 * 109.62580 * 350.89819 * 28 14 12 50 50 H 1.08998 * 109.63231 * 111.47467 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4426 5 1 1.5001 1.8408 -1.9564 6 8 3.2248 0.7146 -2.1162 7 6 3.2168 3.0358 -1.4425 8 6 2.4742 4.2797 -1.9346 9 6 3.5682 3.6487 -2.7996 10 6 2.1389 -1.1671 -0.0005 11 8 3.3489 -1.1692 0.0920 12 6 1.3960 -2.4589 -0.1152 13 8 1.0877 -2.8865 -1.2081 14 7 1.0638 -3.1460 0.9956 15 6 1.3349 -2.5963 2.3327 16 6 0.0375 -2.6643 3.1539 17 7 -0.4723 -4.0420 3.1411 18 6 -1.6124 -4.1899 4.0555 19 6 -1.1482 -3.9848 5.4745 20 1 -0.1100 -3.7669 5.6768 21 6 -2.0487 -4.0765 6.5145 22 7 -3.3129 -4.3424 6.2682 23 14 -1.4734 -3.8216 8.2733 24 1 -0.0159 -3.5369 8.2811 25 1 -2.2050 -2.6766 8.8725 26 1 -1.7418 -5.0492 9.0647 27 6 -0.8303 -4.4649 1.7806 28 6 0.4259 -4.4680 0.9031 29 1 -0.3633 -0.0930 1.0234 30 1 -0.3633 0.9329 -0.4313 31 1 -0.3633 -0.8398 -0.5923 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5137 34 1 4.0873 0.5462 -1.7126 35 1 3.9331 3.1654 -0.6312 36 1 1.4410 4.1539 -2.2581 37 1 2.7022 5.2277 -1.4473 38 1 4.5154 4.1819 -2.8811 39 1 3.2544 3.1080 -3.6925 40 1 2.1117 -3.1854 2.8202 41 1 1.6593 -1.5595 2.2434 42 1 -0.7068 -1.9970 2.7194 43 1 0.2424 -2.3619 4.1810 44 1 -2.3728 -3.4481 3.8113 45 1 -2.0339 -5.1898 3.9521 46 1 -3.9465 -4.4065 6.9999 47 1 -1.5625 -3.7725 1.3653 48 1 -1.2548 -5.4684 1.8116 49 1 0.1492 -4.6693 -0.1318 50 1 1.1171 -5.2335 1.2557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601472568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:38 Heat of formation + Delta-G solvation = -72.127469 kcal Electronic energy + Delta-G solvation = -30762.988789 eV Core-core repulsion = 26598.784416 eV Total energy + Delta-G solvation = -4164.204373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.00267 -39.39993 -38.40040 -37.49963 -36.08317 -35.34745 -34.55331 -32.50594 -31.04716 -30.20386 -28.50182 -27.12712 -26.16823 -24.93587 -23.46617 -22.88327 -22.68197 -21.61566 -21.25234 -20.21730 -18.85245 -17.73461 -17.29522 -16.94518 -16.59123 -16.40849 -16.17715 -15.44429 -15.19377 -14.94333 -14.73669 -14.55808 -14.39113 -14.22981 -13.88722 -13.74357 -13.67405 -13.24511 -13.19667 -12.91038 -12.69391 -12.37666 -12.09519 -11.99392 -11.94650 -11.58801 -11.39418 -11.38751 -11.17802 -11.01473 -10.96228 -10.83839 -10.70206 -10.69228 -10.58107 -10.44018 -9.96253 -9.51837 -9.34227 -8.96454 -8.69132 -8.52747 -7.42881 -6.12308 -4.14484 2.06131 2.09777 2.53612 3.18992 3.24600 3.30641 3.32916 3.36668 4.04748 4.12268 4.23965 4.33457 4.43760 4.60000 4.63816 4.67737 4.79884 4.84723 4.93368 5.12148 5.14878 5.22603 5.24036 5.27340 5.28370 5.38494 5.45103 5.46610 5.53522 5.53967 5.65676 5.70081 5.72031 5.79409 5.90043 6.02309 6.17648 6.32639 6.33755 6.47769 6.84401 7.12384 7.17869 7.23791 7.44969 7.66516 7.67566 7.84795 7.92855 8.03526 8.39400 8.92981 9.50517 10.98404 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016279 B = 0.002531 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.621385 B =11061.120565 C =12022.816512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.597 5.597 3 C 0.084 3.916 4 C 0.122 3.878 5 H 0.098 0.902 6 O -0.549 6.549 7 C -0.194 4.194 8 C -0.173 4.173 9 C -0.164 4.164 10 C 0.530 3.470 11 O -0.514 6.514 12 C 0.515 3.485 13 O -0.521 6.521 14 N -0.589 5.589 15 C 0.109 3.891 16 C 0.054 3.946 17 N -0.536 5.536 18 C 0.194 3.806 19 C -0.510 4.510 20 H 0.064 0.936 21 C 0.056 3.944 22 N -0.897 5.897 23 Si 0.898 3.102 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.284 1.284 27 C 0.042 3.958 28 C 0.116 3.884 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.379 0.621 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.026 0.974 43 H 0.100 0.900 44 H -0.008 1.008 45 H 0.033 0.967 46 H 0.262 0.738 47 H 0.029 0.971 48 H 0.085 0.915 49 H 0.091 0.909 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.553 14.938 -14.048 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.331 5.331 3 C -0.039 4.039 4 C 0.061 3.939 5 H 0.116 0.884 6 O -0.354 6.354 7 C -0.213 4.213 8 C -0.210 4.210 9 C -0.201 4.201 10 C 0.313 3.687 11 O -0.388 6.388 12 C 0.297 3.703 13 O -0.397 6.397 14 N -0.324 5.324 15 C -0.014 4.014 16 C -0.075 4.075 17 N -0.261 5.261 18 C 0.069 3.931 19 C -0.549 4.549 20 H 0.083 0.917 21 C -0.146 4.146 22 N -0.536 5.536 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.087 4.087 28 C -0.006 4.006 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.227 0.773 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.045 0.955 43 H 0.118 0.882 44 H 0.010 0.990 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.047 0.953 48 H 0.103 0.897 49 H 0.110 0.890 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.699 14.335 -14.700 22.708 hybrid contribution -0.124 0.770 1.209 1.438 sum 9.575 15.105 -13.492 22.403 Atomic orbital electron populations 1.21980 0.78332 1.04020 1.02926 1.47673 1.07494 1.05231 1.72725 1.22302 0.99005 0.84929 0.97695 1.21860 0.94343 0.85281 0.92422 0.88433 1.86608 1.33677 1.58761 1.56357 1.23014 1.04197 0.94572 0.99536 1.22979 0.97696 0.96365 1.03999 1.22861 0.99809 1.03068 0.94363 1.20196 0.87927 0.84612 0.75971 1.90735 1.13125 1.86566 1.48408 1.20143 0.79466 0.85654 0.85061 1.90786 1.53106 1.69566 1.26247 1.48293 1.58219 1.19904 1.05947 1.22183 0.99517 0.98272 0.81429 1.22400 0.93584 0.90819 1.00746 1.62082 1.37293 1.20838 1.05874 1.19736 0.86012 0.96765 0.90557 1.21163 0.95283 1.48044 0.90393 0.91737 1.24993 0.94828 0.95324 0.99413 1.69961 1.02382 1.49125 1.32129 0.86447 0.78863 0.77743 0.84397 1.19615 1.21115 1.20972 1.22410 0.94640 1.01414 0.90275 1.21913 0.94963 0.82659 1.01086 0.91380 0.90134 0.90648 0.88804 0.88947 0.77302 0.87352 0.88592 0.88552 0.88707 0.88317 0.89835 0.90823 0.95548 0.88179 0.99016 0.94889 0.92880 0.95320 0.89657 0.89025 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.23 59.85 0.61 1.27 16 2 N -0.60 -6.58 2.83 -182.08 -0.51 -7.10 16 3 C 0.08 0.70 5.13 -4.04 -0.02 0.68 16 4 C 0.12 1.03 3.43 -26.73 -0.09 0.94 16 5 H 0.10 0.84 7.90 -51.93 -0.41 0.43 16 6 O -0.55 -6.28 12.17 -37.05 -0.45 -6.73 16 7 C -0.19 -1.29 5.36 -90.62 -0.49 -1.78 16 8 C -0.17 -1.00 10.18 -26.69 -0.27 -1.27 16 9 C -0.16 -1.10 10.16 -26.69 -0.27 -1.37 16 10 C 0.53 7.65 4.94 -11.59 -0.06 7.60 16 11 O -0.51 -8.26 15.80 3.67 0.06 -8.20 16 12 C 0.51 8.23 5.77 -11.59 -0.07 8.16 16 13 O -0.52 -9.62 16.40 5.50 0.09 -9.53 16 14 N -0.59 -8.96 3.00 -172.69 -0.52 -9.48 16 15 C 0.11 1.58 6.51 -3.37 -0.02 1.56 16 16 C 0.05 0.92 5.47 -3.46 -0.02 0.90 16 17 N -0.54 -10.52 4.62 -235.46 -1.09 -11.60 16 18 C 0.19 4.70 4.72 -4.98 -0.02 4.68 16 19 C -0.51 -13.42 8.41 -34.44 -0.29 -13.71 16 20 H 0.06 1.67 7.13 -52.49 -0.37 1.30 16 21 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 22 N -0.90 -25.56 13.29 55.43 0.74 -24.83 16 23 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 28 C 0.12 1.73 6.61 -3.60 -0.02 1.70 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.54 8.03 -51.93 -0.42 0.12 16 31 H 0.07 0.84 6.88 -51.93 -0.36 0.49 16 32 H 0.09 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.09 0.83 7.36 -51.93 -0.38 0.44 16 34 H 0.38 3.83 8.62 45.56 0.39 4.22 16 35 H 0.11 0.65 8.11 -51.93 -0.42 0.23 16 36 H 0.10 0.53 8.05 -51.93 -0.42 0.11 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.07 0.96 6.44 -51.92 -0.33 0.63 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.10 1.84 6.67 -51.93 -0.35 1.49 16 44 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 45 H 0.03 0.86 7.97 -51.92 -0.41 0.45 16 46 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 1.38 7.99 -51.93 -0.41 0.96 16 49 H 0.09 1.33 7.04 -51.93 -0.37 0.97 16 50 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 404.81 15.07 6.10 6.10 Total: -1.00 -32.46 404.81 -9.38 -41.84 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.62 Total: 2.40 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -1.15 Total: 11.46 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -1.38 Total: -53.00 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.30 Total: -24.47 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.46 -9.38 -41.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601472568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.285 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds