Wall clock time and date at job start Sat Apr 11 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99711 * 2 1 4 4 C 1.53008 * 109.47175 * 269.99931 * 3 2 1 5 5 H 1.09003 * 109.47093 * 60.00241 * 4 3 2 6 6 O 1.42901 * 109.47190 * 300.00139 * 4 3 2 7 7 C 1.52995 * 109.46775 * 179.97438 * 4 3 2 8 8 C 1.53004 * 117.50089 * 248.74470 * 7 4 3 9 9 C 1.53002 * 117.49602 * 180.08657 * 7 4 3 10 10 C 1.34768 * 120.00078 * 180.02562 * 2 1 3 11 11 O 1.21351 * 120.00055 * 185.05166 * 10 2 1 12 12 C 1.49456 * 120.00203 * 5.05558 * 10 2 1 13 13 O 1.21344 * 119.99918 * 84.52655 * 12 10 2 14 14 N 1.34769 * 119.99673 * 264.80553 * 12 10 2 15 15 C 1.47079 * 120.88468 * 4.49613 * 14 12 10 16 16 C 1.53694 * 108.27840 * 128.75115 * 15 14 12 17 17 N 1.46902 * 109.25427 * 54.09069 * 16 15 14 18 18 C 1.46900 * 110.99837 * 172.60877 * 17 16 15 19 19 C 1.50693 * 109.47095 * 294.29535 * 18 17 16 20 20 H 1.07998 * 120.00020 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00227 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99884 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00144 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47085 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47304 * 119.99513 * 23 21 19 26 26 H 1.48499 * 109.47165 * 239.99374 * 23 21 19 27 27 C 1.46907 * 111.26337 * 296.75158 * 17 16 15 28 28 C 1.47079 * 120.88362 * 184.77470 * 14 12 10 29 29 H 1.08995 * 109.47022 * 264.80874 * 1 2 3 30 30 H 1.09004 * 109.46803 * 24.81113 * 1 2 3 31 31 H 1.09001 * 109.47146 * 144.80552 * 1 2 3 32 32 H 1.08997 * 109.47193 * 29.99881 * 3 2 1 33 33 H 1.08996 * 109.46850 * 150.00464 * 3 2 1 34 34 H 0.96698 * 113.99623 * 300.00247 * 6 4 3 35 35 H 1.08995 * 115.55556 * 34.42208 * 7 4 3 36 36 H 1.08999 * 117.49798 * 0.02562 * 8 7 4 37 37 H 1.08996 * 117.49885 * 145.02392 * 8 7 4 38 38 H 1.08997 * 117.50377 * 214.98270 * 9 7 4 39 39 H 1.09000 * 117.49890 * 0.02562 * 9 7 4 40 40 H 1.08999 * 109.63284 * 248.52272 * 15 14 12 41 41 H 1.09008 * 109.62700 * 9.10451 * 15 14 12 42 42 H 1.08997 * 109.65267 * 294.08504 * 16 15 14 43 43 H 1.09006 * 109.42284 * 173.94777 * 16 15 14 44 44 H 1.08999 * 109.47658 * 54.29908 * 18 17 16 45 45 H 1.09008 * 109.47089 * 174.29891 * 18 17 16 46 46 H 0.97003 * 120.00076 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.49193 * 303.14627 * 27 17 16 48 48 H 1.09000 * 109.48823 * 183.06505 * 27 17 16 49 49 H 1.09001 * 109.62580 * 350.89819 * 28 14 12 50 50 H 1.08998 * 109.63231 * 111.47467 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4426 5 1 1.5001 1.8408 -1.9564 6 8 3.2248 0.7146 -2.1162 7 6 3.2168 3.0358 -1.4425 8 6 2.4742 4.2797 -1.9346 9 6 3.5682 3.6487 -2.7996 10 6 2.1389 -1.1671 -0.0005 11 8 3.3489 -1.1692 0.0920 12 6 1.3960 -2.4589 -0.1152 13 8 1.0877 -2.8865 -1.2081 14 7 1.0638 -3.1460 0.9956 15 6 1.3349 -2.5963 2.3327 16 6 0.0375 -2.6643 3.1539 17 7 -0.4723 -4.0420 3.1411 18 6 -1.6124 -4.1899 4.0555 19 6 -1.1482 -3.9848 5.4745 20 1 -0.1100 -3.7669 5.6768 21 6 -2.0487 -4.0765 6.5145 22 7 -3.3129 -4.3424 6.2682 23 14 -1.4734 -3.8216 8.2733 24 1 -0.0159 -3.5369 8.2811 25 1 -2.2050 -2.6766 8.8725 26 1 -1.7418 -5.0492 9.0647 27 6 -0.8303 -4.4649 1.7806 28 6 0.4259 -4.4680 0.9031 29 1 -0.3633 -0.0930 1.0234 30 1 -0.3633 0.9329 -0.4313 31 1 -0.3633 -0.8398 -0.5923 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5137 34 1 4.0873 0.5462 -1.7126 35 1 3.9331 3.1654 -0.6312 36 1 1.4410 4.1539 -2.2581 37 1 2.7022 5.2277 -1.4473 38 1 4.5154 4.1819 -2.8811 39 1 3.2544 3.1080 -3.6925 40 1 2.1117 -3.1854 2.8202 41 1 1.6593 -1.5595 2.2434 42 1 -0.7068 -1.9970 2.7194 43 1 0.2424 -2.3619 4.1810 44 1 -2.3728 -3.4481 3.8113 45 1 -2.0339 -5.1898 3.9521 46 1 -3.9465 -4.4065 6.9999 47 1 -1.5625 -3.7725 1.3653 48 1 -1.2548 -5.4684 1.8116 49 1 0.1492 -4.6693 -0.1318 50 1 1.1171 -5.2335 1.2557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601472568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:37 Heat of formation + Delta-G solvation = -96.018535 kcal Electronic energy + Delta-G solvation = -30764.024784 eV Core-core repulsion = 26598.784416 eV Total energy + Delta-G solvation = -4165.240367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.14383 -40.42907 -39.32864 -38.82866 -36.89702 -36.14929 -36.10232 -34.42471 -32.35899 -31.00820 -30.12342 -28.13834 -27.55416 -26.10758 -24.78856 -24.12046 -23.24736 -23.06457 -21.85165 -21.51775 -19.96179 -18.90582 -18.48381 -18.29583 -17.88110 -17.47170 -17.02439 -16.66977 -16.34148 -16.14409 -16.02274 -15.89537 -15.51738 -15.37728 -15.28085 -14.96495 -14.66291 -14.42797 -14.14280 -14.03838 -13.81926 -13.59366 -13.46195 -13.08481 -12.88325 -12.74726 -12.65799 -12.64457 -12.43101 -12.40947 -12.32763 -12.15072 -12.11729 -11.78347 -11.52395 -11.26655 -11.25009 -11.08362 -10.70521 -10.60610 -10.01604 -9.82241 -9.06571 -8.18637 -6.28071 0.91304 0.98980 1.37680 1.43557 1.45836 1.57851 2.14421 2.42259 2.77342 2.99212 3.13208 3.20001 3.50142 3.60906 3.80749 3.88895 3.93678 3.97591 4.08894 4.10651 4.14360 4.18363 4.25733 4.34390 4.37462 4.42787 4.46161 4.64200 4.65114 4.72671 4.80233 4.80614 4.88346 4.91234 4.97102 5.02571 5.11937 5.18295 5.20961 5.25697 5.27203 5.31306 5.65835 5.88583 5.95409 6.05009 6.27494 6.55819 6.58757 6.63365 6.72121 6.87984 7.41897 8.92512 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016279 B = 0.002531 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.621385 B =11061.120565 C =12022.816512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.587 5.587 3 C 0.082 3.918 4 C 0.122 3.878 5 H 0.096 0.904 6 O -0.573 6.573 7 C -0.193 4.193 8 C -0.162 4.162 9 C -0.175 4.175 10 C 0.527 3.473 11 O -0.536 6.536 12 C 0.514 3.486 13 O -0.550 6.550 14 N -0.589 5.589 15 C 0.121 3.879 16 C 0.057 3.943 17 N -0.542 5.542 18 C 0.210 3.790 19 C -0.519 4.519 20 H 0.068 0.932 21 C 0.003 3.997 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.284 1.284 27 C 0.046 3.954 28 C 0.123 3.877 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.055 0.945 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.381 0.619 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.028 0.972 43 H 0.089 0.911 44 H -0.034 1.034 45 H 0.007 0.993 46 H 0.263 0.737 47 H 0.025 0.975 48 H 0.088 0.912 49 H 0.097 0.903 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.568 16.875 -13.441 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.320 5.320 3 C -0.039 4.039 4 C 0.062 3.938 5 H 0.114 0.886 6 O -0.380 6.380 7 C -0.212 4.212 8 C -0.199 4.199 9 C -0.212 4.212 10 C 0.309 3.691 11 O -0.412 6.412 12 C 0.297 3.703 13 O -0.428 6.428 14 N -0.322 5.322 15 C -0.001 4.001 16 C -0.072 4.072 17 N -0.267 5.267 18 C 0.084 3.916 19 C -0.557 4.557 20 H 0.086 0.914 21 C -0.196 4.196 22 N -0.575 5.575 23 Si 0.791 3.209 24 H -0.184 1.184 25 H -0.206 1.206 26 H -0.210 1.210 27 C -0.083 4.083 28 C 0.001 3.999 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.074 0.926 32 H 0.144 0.856 33 H 0.108 0.892 34 H 0.230 0.770 35 H 0.136 0.864 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.047 0.953 43 H 0.107 0.893 44 H -0.016 1.016 45 H 0.025 0.975 46 H 0.072 0.928 47 H 0.044 0.956 48 H 0.106 0.894 49 H 0.116 0.884 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.716 16.307 -14.100 24.074 hybrid contribution -0.480 0.191 0.939 1.072 sum 10.236 16.498 -13.161 23.456 Atomic orbital electron populations 1.22133 0.77253 1.04965 1.03245 1.47769 1.08248 1.05116 1.70867 1.22537 0.99255 0.84162 0.97975 1.21931 0.94201 0.85591 0.92088 0.88593 1.86580 1.34146 1.59910 1.57335 1.22922 1.04546 0.93954 0.99772 1.23065 0.97554 0.96360 1.02891 1.22882 1.00777 1.03569 0.93959 1.19954 0.87598 0.84938 0.76612 1.90727 1.13721 1.86808 1.49979 1.20502 0.79002 0.86177 0.84591 1.90763 1.54409 1.70397 1.27267 1.48346 1.57913 1.19851 1.06135 1.22084 0.97898 0.99564 0.80567 1.22371 0.94739 0.89324 1.00726 1.61981 1.35218 1.22670 1.06801 1.19368 0.86735 0.94348 0.91193 1.21476 0.95405 1.47434 0.91411 0.91409 1.25869 0.94859 0.95051 1.03774 1.70085 1.03619 1.50319 1.33454 0.85376 0.78879 0.77552 0.79059 1.18440 1.20598 1.20954 1.22422 0.95626 1.01374 0.88908 1.21845 0.94201 0.82990 1.00898 0.90752 0.86892 0.92642 0.85581 0.89232 0.77006 0.86403 0.88214 0.87208 0.87935 0.89699 0.89483 0.88847 0.95340 0.89280 1.01648 0.97482 0.92781 0.95630 0.89416 0.88441 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 10.23 127.77 1.31 2.41 16 2 N -0.59 -11.83 2.83 -848.33 -2.40 -14.23 16 3 C 0.08 1.18 5.13 86.38 0.44 1.62 16 4 C 0.12 1.85 3.43 30.60 0.11 1.95 16 5 H 0.10 1.47 7.90 -2.39 -0.02 1.46 16 6 O -0.57 -12.81 12.17 -147.24 -1.79 -14.60 16 7 C -0.19 -2.17 5.36 -10.79 -0.06 -2.22 16 8 C -0.16 -1.47 10.18 30.62 0.31 -1.15 16 9 C -0.17 -2.09 10.16 30.62 0.31 -1.78 16 10 C 0.53 14.61 4.94 87.27 0.43 15.05 16 11 O -0.54 -16.72 15.80 -1.51 -0.02 -16.75 16 12 C 0.51 16.06 5.77 87.27 0.50 16.57 16 13 O -0.55 -20.22 16.40 -3.23 -0.05 -20.27 16 14 N -0.59 -17.30 3.00 -818.64 -2.46 -19.76 16 15 C 0.12 3.35 6.51 86.50 0.56 3.91 16 16 C 0.06 1.92 5.47 86.54 0.47 2.39 16 17 N -0.54 -21.25 4.62 -898.86 -4.15 -25.41 16 18 C 0.21 10.38 4.72 85.55 0.40 10.79 16 19 C -0.52 -27.38 8.41 25.60 0.22 -27.16 16 20 H 0.07 3.47 7.13 -2.91 -0.02 3.45 16 21 C 0.00 0.14 5.46 84.66 0.46 0.60 16 22 N -0.93 -53.97 13.29 21.45 0.28 -53.68 16 23 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 C 0.05 1.52 5.62 86.38 0.49 2.00 16 28 C 0.12 3.57 6.61 86.35 0.57 4.14 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.11 1.16 8.03 -2.39 -0.02 1.14 16 31 H 0.05 1.19 6.88 -2.39 -0.02 1.17 16 32 H 0.13 1.02 8.07 -2.39 -0.02 1.00 16 33 H 0.09 1.40 7.36 -2.39 -0.02 1.38 16 34 H 0.38 7.65 8.62 -74.06 -0.64 7.01 16 35 H 0.12 1.12 8.11 -2.39 -0.02 1.10 16 36 H 0.10 0.84 8.05 -2.39 -0.02 0.82 16 37 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.09 2.24 6.44 -2.38 -0.02 2.23 16 42 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 3.20 6.67 -2.38 -0.02 3.18 16 44 H -0.03 -1.84 8.12 -2.39 -0.02 -1.86 16 45 H 0.01 0.38 7.97 -2.38 -0.02 0.36 16 46 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 47 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.09 2.85 7.99 -2.39 -0.02 2.84 16 49 H 0.10 2.77 7.04 -2.39 -0.02 2.76 16 50 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -70.28 404.81 -1.74 -72.02 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.30 Total: 19.42 kcal Atomic # 6 Polarization: 22.57 SS G_CDS: 6.53 Total: 29.10 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -8.72 Total: -113.08 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -1.87 Total: -51.62 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -70.28 -1.74 -72.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601472568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.997 kcal (2) G-P(sol) polarization free energy of solvation -70.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds