Wall clock time and date at job start Sat Apr 11 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99800 * 2 1 4 4 C 1.53004 * 109.47150 * 270.00367 * 3 2 1 5 5 H 1.08990 * 110.75207 * 51.52801 * 4 3 2 6 6 C 1.55312 * 110.84733 * 175.00178 * 4 3 2 7 7 C 1.54949 * 100.97989 * 152.50100 * 6 4 3 8 8 O 1.43691 * 105.11260 * 323.61513 * 7 6 4 9 9 C 1.43243 * 109.99787 * 24.36016 * 8 7 6 10 10 C 1.34771 * 120.00231 * 180.02562 * 2 1 3 11 11 O 1.21349 * 120.00324 * 175.30569 * 10 2 1 12 12 C 1.49452 * 119.99756 * 355.30378 * 10 2 1 13 13 O 1.21348 * 120.00205 * 84.90280 * 12 10 2 14 14 N 1.34777 * 120.00085 * 264.89935 * 12 10 2 15 15 C 1.47078 * 120.87909 * 354.69839 * 14 12 10 16 16 C 1.53699 * 108.27442 * 128.75483 * 15 14 12 17 17 N 1.46897 * 109.25488 * 54.08596 * 16 15 14 18 18 C 1.46905 * 111.00026 * 172.60813 * 17 16 15 19 19 C 1.50701 * 109.46872 * 294.29803 * 18 17 16 20 20 H 1.08004 * 120.00250 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99817 * 179.97438 * 19 18 17 22 22 N 1.31507 * 120.00236 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99644 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47101 * 90.00427 * 23 21 19 25 25 H 1.48504 * 109.46747 * 209.99918 * 23 21 19 26 26 H 1.48494 * 109.47409 * 330.00132 * 23 21 19 27 27 C 1.46903 * 111.26920 * 296.75303 * 17 16 15 28 28 C 1.47072 * 120.88177 * 174.97863 * 14 12 10 29 29 H 1.08994 * 109.47352 * 95.16305 * 1 2 3 30 30 H 1.09004 * 109.46810 * 215.16578 * 1 2 3 31 31 H 1.08999 * 109.47277 * 335.16291 * 1 2 3 32 32 H 1.09003 * 109.47361 * 150.00315 * 3 2 1 33 33 H 1.09007 * 109.47411 * 29.99971 * 3 2 1 34 34 H 1.08993 * 111.12119 * 270.44133 * 6 4 3 35 35 H 1.08997 * 111.12695 * 34.56143 * 6 4 3 36 36 H 1.09002 * 110.30598 * 82.48811 * 7 6 4 37 37 H 1.08990 * 110.30900 * 204.66065 * 7 6 4 38 38 H 1.08996 * 109.83208 * 238.81768 * 9 8 7 39 39 H 1.08999 * 109.83162 * 117.83707 * 9 8 7 40 40 H 1.09003 * 109.62861 * 248.52408 * 15 14 12 41 41 H 1.08994 * 109.63246 * 9.10575 * 15 14 12 42 42 H 1.08994 * 109.64739 * 294.07852 * 16 15 14 43 43 H 1.09000 * 109.44131 * 173.95945 * 16 15 14 44 44 H 1.08997 * 109.47144 * 54.29800 * 18 17 16 45 45 H 1.08993 * 109.47396 * 174.29920 * 18 17 16 46 46 H 0.97002 * 120.00422 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.49314 * 303.15048 * 27 17 16 48 48 H 1.08997 * 109.49771 * 183.07175 * 27 17 16 49 49 H 1.09006 * 109.63181 * 350.89836 * 28 14 12 50 50 H 1.09006 * 109.63516 * 111.28223 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 1.5268 1.7032 -2.0179 6 6 3.1165 3.1139 -1.4817 7 6 3.8984 3.0333 -2.8170 8 8 4.3641 1.6763 -2.8971 9 6 3.5229 0.8225 -2.1126 10 6 2.1389 -1.1671 -0.0005 11 8 3.3493 -1.1689 -0.0865 12 6 1.3954 -2.4593 0.1049 13 8 0.9386 -2.9795 -0.8917 14 7 1.2323 -3.0468 1.3068 15 6 1.8748 -2.4960 2.5097 16 6 0.8022 -2.3363 3.5988 17 7 0.1157 -3.6201 3.7947 18 6 -0.7954 -3.5598 4.9455 19 6 0.0039 -3.3757 6.2098 20 1 1.0809 -3.3105 6.1631 21 6 -0.6399 -3.2905 7.4260 22 7 -1.9513 -3.3704 7.4829 23 14 0.3508 -3.0630 8.9932 24 1 0.5234 -1.6131 9.2637 25 1 -0.3667 -3.6963 10.1287 26 1 1.6832 -3.6988 8.8332 27 6 -0.5982 -4.0336 2.5792 28 6 0.4121 -4.2592 1.4493 29 1 -0.3634 -0.0925 -1.0234 30 1 -0.3633 -0.8402 0.5919 31 1 -0.3634 0.9326 0.4317 32 1 3.1499 1.1385 0.5138 33 1 1.6083 2.0284 0.5138 34 1 2.3655 3.9031 -1.5132 35 1 3.7929 3.2521 -0.6382 36 1 3.2388 3.2566 -3.6556 37 1 4.7418 3.7234 -2.8038 38 1 4.1162 0.3189 -1.3494 39 1 3.0422 0.0851 -2.7554 40 1 2.6523 -3.1779 2.8543 41 1 2.3119 -1.5245 2.2791 42 1 0.0792 -1.5801 3.2930 43 1 1.2754 -2.0308 4.5320 44 1 -1.4802 -2.7207 4.8231 45 1 -1.3646 -4.4872 5.0073 46 1 -2.4043 -3.3101 8.3386 47 1 -1.3017 -3.2537 2.2876 48 1 -1.1403 -4.9591 2.7727 49 1 -0.1185 -4.4541 0.5172 50 1 1.0519 -5.1081 1.6906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601473190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:40 Heat of formation + Delta-G solvation = -92.862647 kcal Electronic energy + Delta-G solvation = -30964.599405 eV Core-core repulsion = 26799.495887 eV Total energy + Delta-G solvation = -4165.103518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.15336 -39.79998 -38.79434 -37.59008 -36.19714 -34.59904 -33.08397 -32.51500 -31.02619 -29.99431 -28.56616 -27.41311 -26.94413 -25.64733 -23.89999 -23.32498 -22.56415 -21.78704 -20.99059 -20.15121 -18.95780 -17.85940 -17.40732 -16.82589 -16.63216 -16.46339 -16.27379 -15.19701 -15.05593 -15.04108 -14.84296 -14.71151 -14.53377 -14.04009 -13.90448 -13.77063 -13.65394 -13.57033 -13.17235 -12.99604 -12.92440 -12.50997 -12.37637 -12.04055 -12.01554 -11.71833 -11.60095 -11.41310 -11.24660 -11.21358 -11.09662 -11.02573 -10.86671 -10.71175 -10.63041 -9.98421 -9.82694 -9.49527 -9.37203 -9.15180 -8.74251 -8.54161 -7.46003 -6.13626 -4.15978 1.91797 1.97936 2.49534 3.14735 3.24424 3.31874 3.35624 3.62076 3.95733 4.11328 4.31851 4.32194 4.51380 4.64507 4.73654 4.82579 4.87417 4.92987 5.08263 5.09692 5.12238 5.19992 5.24847 5.32117 5.33752 5.36945 5.40451 5.41042 5.49849 5.57075 5.62374 5.67583 5.71255 5.85856 5.88627 6.02957 6.13050 6.29197 6.29927 6.44055 6.74167 6.76918 7.09196 7.14268 7.18997 7.55558 7.65258 7.76182 7.90379 8.01313 8.37236 8.91129 9.49122 10.97027 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.002599 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.755953 B =10772.489946 C =11666.064288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.602 5.602 3 C 0.125 3.875 4 C -0.140 4.140 5 H 0.087 0.913 6 C -0.149 4.149 7 C 0.051 3.949 8 O -0.387 6.387 9 C 0.050 3.950 10 C 0.520 3.480 11 O -0.507 6.507 12 C 0.515 3.485 13 O -0.523 6.523 14 N -0.589 5.589 15 C 0.108 3.892 16 C 0.053 3.947 17 N -0.536 5.536 18 C 0.195 3.805 19 C -0.512 4.512 20 H 0.064 0.936 21 C 0.057 3.943 22 N -0.897 5.897 23 Si 0.898 3.102 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.272 1.272 27 C 0.042 3.958 28 C 0.117 3.883 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.026 0.974 43 H 0.100 0.900 44 H -0.008 1.008 45 H 0.033 0.967 46 H 0.262 0.738 47 H 0.028 0.972 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.113 12.213 -16.312 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.337 5.337 3 C 0.003 3.997 4 C -0.160 4.160 5 H 0.105 0.895 6 C -0.187 4.187 7 C -0.026 4.026 8 O -0.306 6.306 9 C -0.026 4.026 10 C 0.303 3.697 11 O -0.381 6.381 12 C 0.297 3.703 13 O -0.399 6.399 14 N -0.323 5.323 15 C -0.014 4.014 16 C -0.076 4.076 17 N -0.261 5.261 18 C 0.070 3.930 19 C -0.550 4.550 20 H 0.082 0.918 21 C -0.145 4.145 22 N -0.536 5.536 23 Si 0.725 3.275 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.197 1.197 27 C -0.087 4.087 28 C -0.005 4.005 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.044 0.956 43 H 0.118 0.882 44 H 0.010 0.990 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.046 0.954 48 H 0.104 0.896 49 H 0.109 0.891 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.882 11.482 -16.759 21.149 hybrid contribution -0.613 0.822 0.891 1.358 sum 5.269 12.304 -15.868 20.759 Atomic orbital electron populations 1.21941 0.78154 1.04000 1.02724 1.47842 1.07768 1.05364 1.72727 1.21613 0.98457 0.84098 0.95547 1.23195 0.99909 0.95356 0.97562 0.89475 1.23269 1.00038 0.96428 0.98961 1.23340 0.98302 0.84659 0.96261 1.88425 1.53529 1.17546 1.71122 1.23472 0.91740 0.92467 0.94909 1.20362 0.87911 0.84760 0.76706 1.90761 1.12926 1.86311 1.48130 1.20089 0.80201 0.85898 0.84157 1.90784 1.48787 1.64864 1.35457 1.48279 1.48697 1.28310 1.07002 1.22208 0.96381 0.98757 0.84089 1.22402 0.95521 0.91391 0.98284 1.62082 1.32047 1.28215 1.03746 1.19728 0.90422 0.96485 0.86360 1.21125 0.93687 1.49635 0.90565 0.91778 1.24986 0.94913 0.95329 0.99265 1.69946 1.07497 1.50372 1.25802 0.86500 0.80172 0.78173 0.82608 1.20721 1.21218 1.19694 1.22415 0.94472 1.01069 0.90773 1.21918 0.93311 0.85868 0.99425 0.91722 0.90887 0.89803 0.88961 0.89109 0.89661 0.89849 0.92380 0.89736 0.88745 0.92080 0.89660 0.90651 0.95595 0.88165 0.99050 0.94891 0.92811 0.95408 0.89582 0.89106 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.27 59.85 0.61 1.25 16 2 N -0.60 -6.20 2.86 -182.08 -0.52 -6.72 16 3 C 0.13 1.01 5.00 -4.04 -0.02 0.99 16 4 C -0.14 -1.15 3.21 -88.66 -0.28 -1.44 16 5 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 6 C -0.15 -0.94 6.61 -24.48 -0.16 -1.11 16 7 C 0.05 0.41 7.78 38.19 0.30 0.70 16 8 O -0.39 -4.70 11.36 -35.23 -0.40 -5.10 16 9 C 0.05 0.58 6.53 37.88 0.25 0.83 16 10 C 0.52 7.10 5.14 -11.59 -0.06 7.04 16 11 O -0.51 -7.90 14.06 5.50 0.08 -7.82 16 12 C 0.51 7.79 5.70 -11.58 -0.07 7.72 16 13 O -0.52 -9.08 16.58 5.50 0.09 -8.99 16 14 N -0.59 -8.61 3.00 -172.69 -0.52 -9.13 16 15 C 0.11 1.55 6.55 -3.36 -0.02 1.52 16 16 C 0.05 0.90 5.47 -3.46 -0.02 0.88 16 17 N -0.54 -10.34 4.62 -235.47 -1.09 -11.42 16 18 C 0.19 4.67 4.72 -4.97 -0.02 4.64 16 19 C -0.51 -13.37 8.41 -34.44 -0.29 -13.66 16 20 H 0.06 1.65 7.13 -52.48 -0.37 1.27 16 21 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 22 N -0.90 -25.42 13.29 55.43 0.74 -24.68 16 23 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 28 C 0.12 1.67 6.58 -3.61 -0.02 1.65 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.74 7.00 -51.93 -0.36 0.38 16 31 H 0.08 0.50 7.83 -51.93 -0.41 0.09 16 32 H 0.09 0.84 7.29 -51.93 -0.38 0.46 16 33 H 0.09 0.51 7.86 -51.93 -0.41 0.10 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.27 5.47 -51.93 -0.28 0.99 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 0.98 6.37 -51.93 -0.33 0.65 16 42 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.10 1.82 6.67 -51.93 -0.35 1.48 16 44 H -0.01 -0.21 8.12 -51.93 -0.42 -0.64 16 45 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 46 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 47 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.09 1.35 7.99 -51.93 -0.41 0.93 16 49 H 0.09 1.25 7.10 -51.93 -0.37 0.88 16 50 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 394.24 15.07 5.94 5.94 Total: -1.00 -32.02 394.24 -8.92 -40.94 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.29 Total: -1.72 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 0.07 Total: 13.12 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -1.39 Total: -51.95 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.23 Total: -21.91 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.02 -8.92 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601473190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.921 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds