Wall clock time and date at job start Sat Apr 11 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99800 * 2 1 4 4 C 1.53004 * 109.47150 * 270.00367 * 3 2 1 5 5 H 1.08990 * 110.75207 * 51.52801 * 4 3 2 6 6 C 1.55312 * 110.84733 * 175.00178 * 4 3 2 7 7 C 1.54949 * 100.97989 * 152.50100 * 6 4 3 8 8 O 1.43691 * 105.11260 * 323.61513 * 7 6 4 9 9 C 1.43243 * 109.99787 * 24.36016 * 8 7 6 10 10 C 1.34771 * 120.00231 * 180.02562 * 2 1 3 11 11 O 1.21349 * 120.00324 * 175.30569 * 10 2 1 12 12 C 1.49452 * 119.99756 * 355.30378 * 10 2 1 13 13 O 1.21348 * 120.00205 * 84.90280 * 12 10 2 14 14 N 1.34777 * 120.00085 * 264.89935 * 12 10 2 15 15 C 1.47078 * 120.87909 * 354.69839 * 14 12 10 16 16 C 1.53699 * 108.27442 * 128.75483 * 15 14 12 17 17 N 1.46897 * 109.25488 * 54.08596 * 16 15 14 18 18 C 1.46905 * 111.00026 * 172.60813 * 17 16 15 19 19 C 1.50701 * 109.46872 * 294.29803 * 18 17 16 20 20 H 1.08004 * 120.00250 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99817 * 179.97438 * 19 18 17 22 22 N 1.31507 * 120.00236 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99644 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47101 * 90.00427 * 23 21 19 25 25 H 1.48504 * 109.46747 * 209.99918 * 23 21 19 26 26 H 1.48494 * 109.47409 * 330.00132 * 23 21 19 27 27 C 1.46903 * 111.26920 * 296.75303 * 17 16 15 28 28 C 1.47072 * 120.88177 * 174.97863 * 14 12 10 29 29 H 1.08994 * 109.47352 * 95.16305 * 1 2 3 30 30 H 1.09004 * 109.46810 * 215.16578 * 1 2 3 31 31 H 1.08999 * 109.47277 * 335.16291 * 1 2 3 32 32 H 1.09003 * 109.47361 * 150.00315 * 3 2 1 33 33 H 1.09007 * 109.47411 * 29.99971 * 3 2 1 34 34 H 1.08993 * 111.12119 * 270.44133 * 6 4 3 35 35 H 1.08997 * 111.12695 * 34.56143 * 6 4 3 36 36 H 1.09002 * 110.30598 * 82.48811 * 7 6 4 37 37 H 1.08990 * 110.30900 * 204.66065 * 7 6 4 38 38 H 1.08996 * 109.83208 * 238.81768 * 9 8 7 39 39 H 1.08999 * 109.83162 * 117.83707 * 9 8 7 40 40 H 1.09003 * 109.62861 * 248.52408 * 15 14 12 41 41 H 1.08994 * 109.63246 * 9.10575 * 15 14 12 42 42 H 1.08994 * 109.64739 * 294.07852 * 16 15 14 43 43 H 1.09000 * 109.44131 * 173.95945 * 16 15 14 44 44 H 1.08997 * 109.47144 * 54.29800 * 18 17 16 45 45 H 1.08993 * 109.47396 * 174.29920 * 18 17 16 46 46 H 0.97002 * 120.00422 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.49314 * 303.15048 * 27 17 16 48 48 H 1.08997 * 109.49771 * 183.07175 * 27 17 16 49 49 H 1.09006 * 109.63181 * 350.89836 * 28 14 12 50 50 H 1.09006 * 109.63516 * 111.28223 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 1.5268 1.7032 -2.0179 6 6 3.1165 3.1139 -1.4817 7 6 3.8984 3.0333 -2.8170 8 8 4.3641 1.6763 -2.8971 9 6 3.5229 0.8225 -2.1126 10 6 2.1389 -1.1671 -0.0005 11 8 3.3493 -1.1689 -0.0865 12 6 1.3954 -2.4593 0.1049 13 8 0.9386 -2.9795 -0.8917 14 7 1.2323 -3.0468 1.3068 15 6 1.8748 -2.4960 2.5097 16 6 0.8022 -2.3363 3.5988 17 7 0.1157 -3.6201 3.7947 18 6 -0.7954 -3.5598 4.9455 19 6 0.0039 -3.3757 6.2098 20 1 1.0809 -3.3105 6.1631 21 6 -0.6399 -3.2905 7.4260 22 7 -1.9513 -3.3704 7.4829 23 14 0.3508 -3.0630 8.9932 24 1 0.5234 -1.6131 9.2637 25 1 -0.3667 -3.6963 10.1287 26 1 1.6832 -3.6988 8.8332 27 6 -0.5982 -4.0336 2.5792 28 6 0.4121 -4.2592 1.4493 29 1 -0.3634 -0.0925 -1.0234 30 1 -0.3633 -0.8402 0.5919 31 1 -0.3634 0.9326 0.4317 32 1 3.1499 1.1385 0.5138 33 1 1.6083 2.0284 0.5138 34 1 2.3655 3.9031 -1.5132 35 1 3.7929 3.2521 -0.6382 36 1 3.2388 3.2566 -3.6556 37 1 4.7418 3.7234 -2.8038 38 1 4.1162 0.3189 -1.3494 39 1 3.0422 0.0851 -2.7554 40 1 2.6523 -3.1779 2.8543 41 1 2.3119 -1.5245 2.2791 42 1 0.0792 -1.5801 3.2930 43 1 1.2754 -2.0308 4.5320 44 1 -1.4802 -2.7207 4.8231 45 1 -1.3646 -4.4872 5.0073 46 1 -2.4043 -3.3101 8.3386 47 1 -1.3017 -3.2537 2.2876 48 1 -1.1403 -4.9591 2.7727 49 1 -0.1185 -4.4541 0.5172 50 1 1.0519 -5.1081 1.6906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601473190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:39 Heat of formation + Delta-G solvation = -115.884807 kcal Electronic energy + Delta-G solvation = -30965.597720 eV Core-core repulsion = 26799.495887 eV Total energy + Delta-G solvation = -4166.101833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.22536 -40.71982 -39.83802 -38.94135 -37.09688 -36.11839 -34.43380 -33.81221 -32.31803 -30.68570 -30.14293 -28.17445 -28.14084 -27.03761 -25.08321 -24.67208 -23.55696 -23.06059 -21.94184 -21.24753 -20.00206 -18.96947 -18.48732 -18.39966 -17.84264 -17.41874 -17.18768 -16.69704 -16.20701 -16.06416 -16.02737 -15.92316 -15.66134 -15.40422 -15.36389 -14.99174 -14.47131 -14.40309 -14.27920 -14.07033 -13.95881 -13.62200 -13.54733 -13.23368 -13.06934 -12.88329 -12.67724 -12.62903 -12.60565 -12.42956 -12.34864 -12.32287 -12.15242 -11.88816 -11.79109 -11.74633 -11.28260 -10.82023 -10.59975 -10.47172 -10.03263 -9.97506 -9.06365 -8.18684 -6.28093 0.86123 0.88834 1.39052 1.44107 1.46013 1.56690 2.13408 2.42197 2.89653 2.96924 3.13118 3.19746 3.43961 3.69025 3.79625 3.85318 3.93720 4.07093 4.11620 4.18198 4.24405 4.27282 4.30344 4.36602 4.41263 4.44936 4.51938 4.62581 4.64967 4.76299 4.80879 4.81296 4.85122 4.90530 4.91797 4.96751 4.98485 5.10706 5.17859 5.20869 5.28699 5.31291 5.65467 5.84586 5.93907 6.02576 6.05058 6.27284 6.55405 6.56998 6.57930 6.87641 7.41887 8.92148 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.002599 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.755953 B =10772.489946 C =11666.064288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.592 5.592 3 C 0.122 3.878 4 C -0.133 4.133 5 H 0.096 0.904 6 C -0.137 4.137 7 C 0.039 3.961 8 O -0.417 6.417 9 C 0.050 3.950 10 C 0.517 3.483 11 O -0.533 6.533 12 C 0.515 3.485 13 O -0.549 6.549 14 N -0.589 5.589 15 C 0.121 3.879 16 C 0.058 3.942 17 N -0.543 5.543 18 C 0.211 3.789 19 C -0.521 4.521 20 H 0.067 0.933 21 C 0.004 3.996 22 N -0.933 5.933 23 Si 0.965 3.035 24 H -0.272 1.272 25 H -0.287 1.287 26 H -0.265 1.265 27 C 0.046 3.954 28 C 0.124 3.876 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.029 0.971 43 H 0.087 0.913 44 H -0.034 1.034 45 H 0.007 0.993 46 H 0.264 0.736 47 H 0.028 0.972 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.547 14.361 -16.225 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.325 5.325 3 C 0.001 3.999 4 C -0.153 4.153 5 H 0.114 0.886 6 C -0.174 4.174 7 C -0.037 4.037 8 O -0.337 6.337 9 C -0.026 4.026 10 C 0.299 3.701 11 O -0.409 6.409 12 C 0.298 3.702 13 O -0.426 6.426 14 N -0.322 5.322 15 C -0.001 4.001 16 C -0.071 4.071 17 N -0.268 5.268 18 C 0.085 3.915 19 C -0.559 4.559 20 H 0.085 0.915 21 C -0.194 4.194 22 N -0.574 5.574 23 Si 0.790 3.210 24 H -0.197 1.197 25 H -0.213 1.213 26 H -0.190 1.190 27 C -0.083 4.083 28 C 0.002 3.998 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.100 0.900 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.047 0.953 43 H 0.105 0.895 44 H -0.016 1.016 45 H 0.026 0.974 46 H 0.072 0.928 47 H 0.046 0.954 48 H 0.106 0.894 49 H 0.118 0.882 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.313 13.664 -16.686 22.471 hybrid contribution -0.765 0.174 0.766 1.097 sum 5.548 13.837 -15.919 21.810 Atomic orbital electron populations 1.22123 0.76814 1.05106 1.03117 1.47946 1.08637 1.05075 1.70818 1.21855 0.98595 0.83638 0.95769 1.23153 0.99166 0.95709 0.97221 0.88564 1.23264 1.00382 0.95804 0.97992 1.23640 0.99399 0.82879 0.97781 1.88392 1.54328 1.19604 1.71376 1.23355 0.92311 0.92897 0.94084 1.20147 0.87544 0.85165 0.77250 1.90765 1.13779 1.86603 1.49797 1.20409 0.79708 0.86337 0.83704 1.90764 1.50008 1.65644 1.36216 1.48317 1.48551 1.28263 1.07107 1.22082 0.95252 0.99773 0.83010 1.22354 0.95853 0.90257 0.98634 1.61971 1.31307 1.29736 1.03793 1.19352 0.90260 0.94006 0.87912 1.21453 0.93970 1.48980 0.91530 0.91528 1.25844 0.95840 0.95064 1.02654 1.70069 1.09142 1.51571 1.26615 0.85446 0.78741 0.78447 0.78380 1.19739 1.21265 1.18964 1.22431 0.94879 1.01066 0.89939 1.21844 0.93019 0.86040 0.98880 0.91188 0.92621 0.86362 0.89951 0.85280 0.86677 0.89341 0.91441 0.88453 0.91001 0.94303 0.89498 0.88936 0.95316 0.89475 1.01588 0.97449 0.92762 0.95359 0.89376 0.88227 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.27 127.77 1.31 2.34 16 2 N -0.59 -11.04 2.86 -848.34 -2.42 -13.46 16 3 C 0.12 1.65 5.00 86.38 0.43 2.08 16 4 C -0.13 -1.88 3.21 -9.53 -0.03 -1.91 16 5 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 6 C -0.14 -1.30 6.61 32.05 0.21 -1.08 16 7 C 0.04 0.55 7.78 72.65 0.57 1.11 16 8 O -0.42 -10.08 11.36 -148.98 -1.69 -11.77 16 9 C 0.05 1.16 6.53 72.45 0.47 1.64 16 10 C 0.52 13.74 5.14 87.27 0.45 14.19 16 11 O -0.53 -16.59 14.06 -3.24 -0.05 -16.63 16 12 C 0.52 15.29 5.70 87.27 0.50 15.79 16 13 O -0.55 -18.90 16.58 -3.24 -0.05 -18.96 16 14 N -0.59 -16.71 3.00 -818.63 -2.46 -19.17 16 15 C 0.12 3.33 6.55 86.50 0.57 3.89 16 16 C 0.06 1.92 5.47 86.54 0.47 2.39 16 17 N -0.54 -20.98 4.62 -898.88 -4.15 -25.13 16 18 C 0.21 10.32 4.72 85.56 0.40 10.72 16 19 C -0.52 -27.38 8.41 25.60 0.22 -27.16 16 20 H 0.07 3.40 7.13 -2.91 -0.02 3.38 16 21 C 0.00 0.23 5.46 84.66 0.46 0.69 16 22 N -0.93 -53.58 13.29 21.45 0.28 -53.29 16 23 Si 0.96 41.99 29.54 68.60 2.03 44.02 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 C 0.05 1.46 5.62 86.38 0.49 1.95 16 28 C 0.12 3.46 6.58 86.35 0.57 4.02 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.04 7.00 -2.38 -0.02 1.02 16 31 H 0.12 0.92 7.83 -2.39 -0.02 0.90 16 32 H 0.08 1.34 7.29 -2.39 -0.02 1.33 16 33 H 0.13 0.82 7.86 -2.38 -0.02 0.80 16 34 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.09 0.78 8.04 -2.39 -0.02 0.76 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 2.00 5.47 -2.39 -0.01 1.98 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 40 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.09 2.26 6.37 -2.39 -0.02 2.24 16 42 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 3.13 6.67 -2.39 -0.02 3.11 16 44 H -0.03 -1.79 8.12 -2.39 -0.02 -1.81 16 45 H 0.01 0.40 7.97 -2.39 -0.02 0.38 16 46 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 47 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 2.77 7.99 -2.39 -0.02 2.75 16 49 H 0.10 2.66 7.10 -2.38 -0.02 2.64 16 50 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -71.06 394.24 -0.50 -71.57 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.93 Total: 12.17 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: 7.09 Total: 30.65 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -8.75 Total: -111.05 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -1.79 Total: -47.36 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -71.06 -0.50 -71.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601473190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.319 kcal (2) G-P(sol) polarization free energy of solvation -71.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds