Wall clock time and date at job start Sat Apr 11 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00264 * 2 1 4 4 C 1.52992 * 109.47781 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47488 * 184.99780 * 4 3 2 6 6 N 1.46501 * 109.47079 * 65.00164 * 4 3 2 7 7 C 1.34774 * 120.00359 * 155.00428 * 6 4 3 8 8 O 1.21354 * 119.99609 * 359.97438 * 7 6 4 9 9 C 1.49450 * 120.00330 * 179.97438 * 7 6 4 10 10 O 1.21350 * 119.99826 * 353.51664 * 9 7 6 11 11 N 1.34780 * 120.00093 * 173.51356 * 9 7 6 12 12 C 1.47077 * 120.87899 * 181.25980 * 11 9 7 13 13 C 1.53694 * 108.27351 * 128.75579 * 12 11 9 14 14 N 1.46903 * 109.25536 * 54.08440 * 13 12 11 15 15 C 1.46903 * 110.99863 * 172.60617 * 14 13 12 16 16 C 1.50701 * 109.47261 * 294.30012 * 15 14 13 17 17 H 1.07997 * 119.99663 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00025 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00355 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00161 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46797 * 59.99719 * 20 18 16 22 22 H 1.48490 * 109.47383 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46967 * 300.00436 * 20 18 16 24 24 C 1.46892 * 111.26724 * 296.75202 * 14 13 12 25 25 C 1.47077 * 120.88016 * 1.54128 * 11 9 7 26 26 C 1.53002 * 109.47291 * 305.00252 * 4 3 2 27 27 C 1.53001 * 117.49858 * 248.74840 * 26 4 3 28 28 C 1.52995 * 117.50301 * 180.08663 * 26 4 3 29 29 H 1.09001 * 109.46640 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47070 * 299.99904 * 1 2 3 31 31 H 1.08994 * 109.46777 * 60.00449 * 1 2 3 32 32 H 1.09006 * 109.46815 * 300.00352 * 3 2 1 33 33 H 1.09004 * 109.47077 * 59.99776 * 3 2 1 34 34 H 0.97000 * 119.99796 * 334.99458 * 6 4 3 35 35 H 1.08993 * 109.62805 * 248.52263 * 12 11 9 36 36 H 1.08999 * 109.62858 * 9.10987 * 12 11 9 37 37 H 1.09000 * 109.65072 * 294.08087 * 13 12 11 38 38 H 1.08998 * 109.42174 * 173.94403 * 13 12 11 39 39 H 1.09003 * 109.46992 * 54.29943 * 15 14 13 40 40 H 1.09003 * 109.47235 * 174.29937 * 15 14 13 41 41 H 0.97002 * 120.00440 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.49749 * 303.14777 * 24 14 13 43 43 H 1.09003 * 109.49253 * 183.06586 * 24 14 13 44 44 H 1.08997 * 109.63158 * 350.89754 * 25 11 9 45 45 H 1.08998 * 109.62756 * 111.47694 * 25 11 9 46 46 H 1.08998 * 115.55039 * 34.40963 * 26 4 3 47 47 H 1.09000 * 117.49562 * 359.97438 * 27 26 4 48 48 H 1.08999 * 117.49912 * 145.01694 * 27 26 4 49 49 H 1.08997 * 117.50322 * 214.98036 * 28 26 4 50 50 H 1.09005 * 117.49998 * 359.97217 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9767 0.5641 -1.2509 7 6 5.2209 0.7941 -1.7151 8 8 5.9755 1.5156 -1.0966 9 6 5.6712 0.1605 -2.9916 10 8 4.9626 -0.6519 -3.5487 11 7 6.8644 0.4914 -3.5240 12 6 7.3146 -0.0995 -4.7933 13 6 7.7458 1.0406 -5.7295 14 7 8.7415 1.8776 -5.0469 15 6 9.3098 2.8739 -5.9648 16 6 10.0973 2.1733 -7.0418 17 1 10.1682 1.0957 -7.0445 18 6 10.7273 2.9080 -8.0237 19 7 10.6406 4.2203 -8.0208 20 14 11.7041 2.0396 -9.3584 21 1 10.8082 1.1265 -10.1126 22 1 12.2784 3.0467 -10.2862 23 1 12.8015 1.2551 -8.7375 24 6 8.1698 2.5230 -3.8577 25 6 7.7533 1.4484 -2.8478 26 6 3.9781 0.3198 1.1826 27 6 4.7338 1.0107 2.3195 28 6 5.4787 0.0798 1.3595 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 3.3734 -0.0125 -1.7454 35 1 8.1581 -0.7646 -4.6087 36 1 6.4964 -0.6584 -5.2476 37 1 6.8790 1.6472 -5.9917 38 1 8.1834 0.6202 -6.6350 39 1 8.5040 3.4497 -6.4201 40 1 9.9676 3.5442 -5.4114 41 1 11.0841 4.7373 -8.7114 42 1 7.2971 3.1090 -4.1459 43 1 8.9149 3.1777 -3.4056 44 1 7.2254 1.9133 -2.0152 45 1 8.6382 0.9291 -2.4798 46 1 3.3035 -0.4940 1.4483 47 1 4.9159 2.0812 2.2253 48 1 4.5566 0.6510 3.3331 49 1 5.7914 -0.8918 1.7418 50 1 6.1507 0.5377 0.6335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602252949.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:57 Heat of formation + Delta-G solvation = -54.634667 kcal Electronic energy + Delta-G solvation = -30422.572102 eV Core-core repulsion = 26259.126274 eV Total energy + Delta-G solvation = -4163.445828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08932 -39.45779 -38.28020 -37.57431 -37.10312 -34.92581 -34.05758 -32.37286 -30.73516 -30.38484 -28.44984 -26.87747 -25.86495 -24.66972 -23.69097 -22.96279 -22.48559 -21.82906 -20.78351 -20.58083 -19.34945 -17.63539 -17.34038 -16.86876 -16.43741 -16.31590 -16.21875 -15.91006 -15.63263 -15.13587 -14.73783 -14.68455 -14.45774 -14.27438 -14.11084 -13.73621 -13.54978 -13.39475 -12.99237 -12.78931 -12.36207 -12.26697 -12.22210 -12.00988 -11.74038 -11.61218 -11.37432 -11.23808 -10.96634 -10.78399 -10.72074 -10.60803 -10.56187 -10.53741 -10.39391 -10.17164 -9.88804 -9.45917 -9.34631 -8.90882 -8.56412 -8.43625 -7.29569 -6.04379 -4.06341 1.37539 2.24714 3.12165 3.25364 3.32960 3.37098 3.39804 3.43074 3.74445 4.16715 4.29478 4.41021 4.45363 4.78124 4.79110 4.81772 4.88567 4.92778 4.97335 5.04468 5.10456 5.25118 5.30928 5.37392 5.38294 5.46260 5.47792 5.62824 5.69982 5.76017 5.82328 5.86822 5.94383 5.96135 6.17207 6.31309 6.38754 6.45157 6.53046 6.60297 6.63151 6.96375 7.24874 7.30045 7.39516 7.71363 7.76431 7.98995 8.04216 8.14705 8.50372 9.00629 9.58067 11.06336 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023015 B = 0.002224 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.282324 B =12587.955793 C =13021.856385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.055 3.945 4 C 0.177 3.823 5 H 0.106 0.894 6 N -0.688 5.688 7 C 0.516 3.484 8 O -0.508 6.508 9 C 0.501 3.499 10 O -0.534 6.534 11 N -0.569 5.569 12 C 0.110 3.890 13 C 0.053 3.947 14 N -0.538 5.538 15 C 0.194 3.806 16 C -0.510 4.510 17 H 0.063 0.937 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.042 3.958 25 C 0.059 3.941 26 C -0.169 4.169 27 C -0.171 4.171 28 C -0.182 4.182 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.417 0.583 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.025 0.975 38 H 0.099 0.901 39 H -0.010 1.010 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.024 0.976 43 H 0.081 0.919 44 H 0.149 0.851 45 H 0.073 0.927 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.106 -6.298 19.903 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.022 4.022 4 C 0.073 3.927 5 H 0.124 0.876 6 N -0.341 5.341 7 C 0.299 3.701 8 O -0.386 6.386 9 C 0.283 3.717 10 O -0.412 6.412 11 N -0.301 5.301 12 C -0.012 4.012 13 C -0.077 4.077 14 N -0.263 5.263 15 C 0.069 3.931 16 C -0.548 4.548 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.727 3.273 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.087 4.087 25 C -0.062 4.062 26 C -0.188 4.188 27 C -0.208 4.208 28 C -0.219 4.219 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.254 0.746 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.043 0.957 38 H 0.117 0.883 39 H 0.008 0.992 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.100 0.900 44 H 0.166 0.834 45 H 0.091 0.909 46 H 0.132 0.868 47 H 0.114 0.886 48 H 0.111 0.889 49 H 0.107 0.893 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.395 -6.507 20.078 27.997 hybrid contribution -0.471 0.162 -1.332 1.422 sum -18.866 -6.345 18.746 27.342 Atomic orbital electron populations 1.22769 0.80590 1.03054 1.00112 1.87898 1.20002 1.27157 1.95432 1.22797 0.92121 0.85657 1.01630 1.20756 0.92206 0.97277 0.82447 0.87588 1.45805 1.14240 1.49769 1.24257 1.20340 0.82483 0.81144 0.86139 1.90307 1.51933 1.37746 1.58646 1.19870 0.82610 0.83462 0.85715 1.90737 1.54234 1.34167 1.62066 1.48178 1.16339 1.42423 1.23152 1.22146 0.99847 0.96432 0.82768 1.22406 0.93934 0.94291 0.97023 1.62117 1.31169 1.24893 1.08097 1.19721 0.93740 0.89462 0.90192 1.21109 1.31092 0.93618 1.09014 0.91856 1.24995 0.96665 0.94838 0.98098 1.69947 1.44137 1.04978 1.34690 0.86547 0.80326 0.79111 0.81343 1.20262 1.21388 1.20126 1.22410 0.98015 0.95340 0.92946 1.23389 0.94766 0.90528 0.97520 1.22603 0.95972 1.02854 0.97363 1.22952 1.04239 0.98950 0.94688 1.23287 0.94275 1.00952 1.03353 0.89409 0.93950 0.93866 0.92125 0.91195 0.74589 0.90263 0.89208 0.95714 0.88331 0.99170 0.95007 0.92837 0.95811 0.90021 0.83435 0.90903 0.86776 0.88626 0.88916 0.89304 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.93 9.46 -35.23 -0.33 -3.26 16 3 C 0.06 0.36 5.68 37.15 0.21 0.57 16 4 C 0.18 1.48 2.67 -67.93 -0.18 1.30 16 5 H 0.11 0.91 7.33 -51.93 -0.38 0.53 16 6 N -0.69 -7.11 5.03 -54.24 -0.27 -7.39 16 7 C 0.52 6.62 7.14 -11.59 -0.08 6.54 16 8 O -0.51 -6.81 10.06 5.49 0.06 -6.75 16 9 C 0.50 7.63 7.77 -11.58 -0.09 7.54 16 10 O -0.53 -8.95 15.95 5.50 0.09 -8.87 16 11 N -0.57 -9.06 3.00 -172.70 -0.52 -9.58 16 12 C 0.11 1.81 6.62 -3.37 -0.02 1.79 16 13 C 0.05 1.02 5.47 -3.46 -0.02 1.00 16 14 N -0.54 -11.50 4.62 -235.46 -1.09 -12.59 16 15 C 0.19 5.01 4.72 -4.97 -0.02 4.99 16 16 C -0.51 -14.12 8.41 -34.44 -0.29 -14.41 16 17 H 0.06 1.72 7.13 -52.49 -0.37 1.34 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 20 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 C 0.04 0.77 5.62 -3.71 -0.02 0.75 16 25 C 0.06 0.92 6.35 -3.60 -0.02 0.89 16 26 C -0.17 -1.45 5.22 -90.62 -0.47 -1.92 16 27 C -0.17 -1.35 10.18 -26.69 -0.27 -1.62 16 28 C -0.18 -1.79 9.74 -26.70 -0.26 -2.05 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.42 4.28 7.87 -40.82 -0.32 3.96 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.09 1.42 7.07 -51.93 -0.37 1.06 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.10 2.02 6.67 -51.93 -0.35 1.67 16 39 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 40 H 0.03 0.88 7.97 -51.93 -0.41 0.46 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 1.44 7.99 -51.93 -0.41 1.03 16 44 H 0.15 2.18 3.92 -56.54 -0.22 1.95 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.11 1.01 7.39 -51.93 -0.38 0.63 16 47 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.12 1.38 5.02 -51.93 -0.26 1.12 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -31.36 396.74 -9.02 -40.38 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -8.11 Total: 3.32 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -0.53 Total: 8.09 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -1.14 Total: -55.38 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.19 Total: -18.88 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.36 -9.02 -40.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602252949.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.256 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds