Wall clock time and date at job start Sat Apr 11 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00264 * 2 1 4 4 C 1.52992 * 109.47781 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47488 * 184.99780 * 4 3 2 6 6 N 1.46501 * 109.47079 * 65.00164 * 4 3 2 7 7 C 1.34774 * 120.00359 * 155.00428 * 6 4 3 8 8 O 1.21354 * 119.99609 * 359.97438 * 7 6 4 9 9 C 1.49450 * 120.00330 * 179.97438 * 7 6 4 10 10 O 1.21350 * 119.99826 * 353.51664 * 9 7 6 11 11 N 1.34780 * 120.00093 * 173.51356 * 9 7 6 12 12 C 1.47077 * 120.87899 * 181.25980 * 11 9 7 13 13 C 1.53694 * 108.27351 * 128.75579 * 12 11 9 14 14 N 1.46903 * 109.25536 * 54.08440 * 13 12 11 15 15 C 1.46903 * 110.99863 * 172.60617 * 14 13 12 16 16 C 1.50701 * 109.47261 * 294.30012 * 15 14 13 17 17 H 1.07997 * 119.99663 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00025 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00355 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00161 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46797 * 59.99719 * 20 18 16 22 22 H 1.48490 * 109.47383 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46967 * 300.00436 * 20 18 16 24 24 C 1.46892 * 111.26724 * 296.75202 * 14 13 12 25 25 C 1.47077 * 120.88016 * 1.54128 * 11 9 7 26 26 C 1.53002 * 109.47291 * 305.00252 * 4 3 2 27 27 C 1.53001 * 117.49858 * 248.74840 * 26 4 3 28 28 C 1.52995 * 117.50301 * 180.08663 * 26 4 3 29 29 H 1.09001 * 109.46640 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47070 * 299.99904 * 1 2 3 31 31 H 1.08994 * 109.46777 * 60.00449 * 1 2 3 32 32 H 1.09006 * 109.46815 * 300.00352 * 3 2 1 33 33 H 1.09004 * 109.47077 * 59.99776 * 3 2 1 34 34 H 0.97000 * 119.99796 * 334.99458 * 6 4 3 35 35 H 1.08993 * 109.62805 * 248.52263 * 12 11 9 36 36 H 1.08999 * 109.62858 * 9.10987 * 12 11 9 37 37 H 1.09000 * 109.65072 * 294.08087 * 13 12 11 38 38 H 1.08998 * 109.42174 * 173.94403 * 13 12 11 39 39 H 1.09003 * 109.46992 * 54.29943 * 15 14 13 40 40 H 1.09003 * 109.47235 * 174.29937 * 15 14 13 41 41 H 0.97002 * 120.00440 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.49749 * 303.14777 * 24 14 13 43 43 H 1.09003 * 109.49253 * 183.06586 * 24 14 13 44 44 H 1.08997 * 109.63158 * 350.89754 * 25 11 9 45 45 H 1.08998 * 109.62756 * 111.47694 * 25 11 9 46 46 H 1.08998 * 115.55039 * 34.40963 * 26 4 3 47 47 H 1.09000 * 117.49562 * 359.97438 * 27 26 4 48 48 H 1.08999 * 117.49912 * 145.01694 * 27 26 4 49 49 H 1.08997 * 117.50322 * 214.98036 * 28 26 4 50 50 H 1.09005 * 117.49998 * 359.97217 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9767 0.5641 -1.2509 7 6 5.2209 0.7941 -1.7151 8 8 5.9755 1.5156 -1.0966 9 6 5.6712 0.1605 -2.9916 10 8 4.9626 -0.6519 -3.5487 11 7 6.8644 0.4914 -3.5240 12 6 7.3146 -0.0995 -4.7933 13 6 7.7458 1.0406 -5.7295 14 7 8.7415 1.8776 -5.0469 15 6 9.3098 2.8739 -5.9648 16 6 10.0973 2.1733 -7.0418 17 1 10.1682 1.0957 -7.0445 18 6 10.7273 2.9080 -8.0237 19 7 10.6406 4.2203 -8.0208 20 14 11.7041 2.0396 -9.3584 21 1 10.8082 1.1265 -10.1126 22 1 12.2784 3.0467 -10.2862 23 1 12.8015 1.2551 -8.7375 24 6 8.1698 2.5230 -3.8577 25 6 7.7533 1.4484 -2.8478 26 6 3.9781 0.3198 1.1826 27 6 4.7338 1.0107 2.3195 28 6 5.4787 0.0798 1.3595 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 3.3734 -0.0125 -1.7454 35 1 8.1581 -0.7646 -4.6087 36 1 6.4964 -0.6584 -5.2476 37 1 6.8790 1.6472 -5.9917 38 1 8.1834 0.6202 -6.6350 39 1 8.5040 3.4497 -6.4201 40 1 9.9676 3.5442 -5.4114 41 1 11.0841 4.7373 -8.7114 42 1 7.2971 3.1090 -4.1459 43 1 8.9149 3.1777 -3.4056 44 1 7.2254 1.9133 -2.0152 45 1 8.6382 0.9291 -2.4798 46 1 3.3035 -0.4940 1.4483 47 1 4.9159 2.0812 2.2253 48 1 4.5566 0.6510 3.3331 49 1 5.7914 -0.8918 1.7418 50 1 6.1507 0.5377 0.6335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602252949.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:56 Heat of formation + Delta-G solvation = -77.325455 kcal Electronic energy + Delta-G solvation = -30423.556048 eV Core-core repulsion = 26259.126274 eV Total energy + Delta-G solvation = -4164.429774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.17604 -40.47960 -39.14331 -38.96182 -37.77872 -36.24208 -35.24081 -34.35333 -32.17580 -31.07676 -30.18709 -27.69784 -27.19110 -25.90736 -24.63847 -24.22407 -23.58219 -23.15353 -22.07759 -21.34737 -20.64244 -18.84736 -18.40918 -18.33339 -17.60122 -17.39508 -16.96804 -16.75452 -16.68089 -16.25012 -16.16770 -16.06876 -15.67567 -15.53009 -15.40951 -15.09422 -14.86059 -14.39984 -14.18647 -14.09864 -13.66433 -13.37398 -13.12367 -12.87865 -12.84321 -12.78821 -12.77468 -12.55360 -12.35980 -12.28081 -12.23717 -12.19831 -12.03624 -11.75283 -11.37774 -11.25159 -11.07067 -10.63166 -10.61936 -10.35111 -10.09063 -9.90841 -9.08603 -8.20604 -6.31017 0.25946 1.19063 1.42422 1.45441 1.53216 2.03326 2.30663 2.41119 2.77752 2.98449 3.11388 3.22590 3.28020 3.54725 3.84796 3.93045 4.02039 4.13429 4.17391 4.20474 4.28805 4.33174 4.39737 4.42578 4.47883 4.55955 4.60290 4.61596 4.72866 4.75298 4.81729 4.86963 4.90053 4.93778 4.99788 5.06427 5.10408 5.18794 5.26121 5.31018 5.41173 5.43113 5.62953 5.92780 6.02410 6.15015 6.19508 6.27591 6.55755 6.62821 6.83960 6.87548 7.38699 8.90341 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023015 B = 0.002224 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.282324 B =12587.955793 C =13021.856385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.058 3.942 4 C 0.174 3.826 5 H 0.107 0.893 6 N -0.675 5.675 7 C 0.520 3.480 8 O -0.514 6.514 9 C 0.501 3.499 10 O -0.549 6.549 11 N -0.576 5.576 12 C 0.121 3.879 13 C 0.056 3.944 14 N -0.541 5.541 15 C 0.209 3.791 16 C -0.524 4.524 17 H 0.067 0.933 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.267 1.267 24 C 0.042 3.958 25 C 0.073 3.927 26 C -0.164 4.164 27 C -0.155 4.155 28 C -0.201 4.201 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.418 0.582 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.013 0.987 38 H 0.085 0.915 39 H -0.041 1.041 40 H 0.008 0.992 41 H 0.264 0.736 42 H 0.017 0.983 43 H 0.084 0.916 44 H 0.163 0.837 45 H 0.078 0.922 46 H 0.114 0.886 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.088 0.912 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.108 -7.350 21.088 30.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C -0.018 4.018 4 C 0.071 3.929 5 H 0.125 0.875 6 N -0.327 5.327 7 C 0.301 3.699 8 O -0.393 6.393 9 C 0.284 3.716 10 O -0.428 6.428 11 N -0.308 5.308 12 C -0.001 4.001 13 C -0.073 4.073 14 N -0.266 5.266 15 C 0.083 3.917 16 C -0.562 4.562 17 H 0.085 0.915 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.192 1.192 24 C -0.087 4.087 25 C -0.047 4.047 26 C -0.183 4.183 27 C -0.192 4.192 28 C -0.238 4.238 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.256 0.744 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.032 0.968 38 H 0.104 0.896 39 H -0.023 1.023 40 H 0.026 0.974 41 H 0.073 0.927 42 H 0.035 0.965 43 H 0.102 0.898 44 H 0.179 0.821 45 H 0.096 0.904 46 H 0.132 0.868 47 H 0.118 0.882 48 H 0.125 0.875 49 H 0.107 0.893 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.438 -7.577 21.298 29.814 hybrid contribution -0.251 0.493 -1.635 1.726 sum -19.690 -7.084 19.663 28.714 Atomic orbital electron populations 1.22903 0.79355 1.03711 1.00961 1.87862 1.21396 1.27726 1.95626 1.22807 0.90473 0.85628 1.02936 1.20965 0.93756 0.96968 0.81239 0.87506 1.45821 1.13110 1.49053 1.24677 1.19882 0.83322 0.81336 0.85322 1.90284 1.52299 1.38270 1.58488 1.20292 0.81896 0.83047 0.86346 1.90724 1.54469 1.34829 1.62790 1.48219 1.16875 1.42682 1.23058 1.21973 1.00459 0.95074 0.82635 1.22365 0.92785 0.94683 0.97432 1.62055 1.32547 1.23922 1.08077 1.19376 0.92380 0.89674 0.90311 1.21428 1.31254 0.93903 1.09650 0.91511 1.25930 0.97696 0.95519 1.00567 1.70081 1.45137 1.06590 1.35690 0.85418 0.78867 0.78021 0.78202 1.19182 1.21038 1.19232 1.22505 0.97653 0.96336 0.92223 1.23344 0.95103 0.89695 0.96601 1.22573 0.95002 1.02966 0.97758 1.23022 1.02362 0.98872 0.94990 1.23223 0.94779 1.01535 1.04281 0.88957 0.92684 0.93412 0.91529 0.89127 0.74414 0.89391 0.88316 0.96849 0.89623 1.02319 0.97378 0.92688 0.96513 0.89751 0.82087 0.90367 0.86827 0.88187 0.87459 0.89298 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -5.35 9.46 -148.98 -1.41 -6.76 16 3 C 0.06 0.62 5.68 71.98 0.41 1.03 16 4 C 0.17 2.59 2.67 44.99 0.12 2.71 16 5 H 0.11 1.62 7.33 -2.39 -0.02 1.60 16 6 N -0.68 -13.02 5.03 -443.87 -2.23 -15.26 16 7 C 0.52 12.74 7.14 87.27 0.62 13.36 16 8 O -0.51 -13.17 10.06 -3.26 -0.03 -13.21 16 9 C 0.50 14.75 7.77 87.27 0.68 15.43 16 10 O -0.55 -17.86 15.95 -3.25 -0.05 -17.91 16 11 N -0.58 -17.88 3.00 -818.65 -2.46 -20.34 16 12 C 0.12 3.90 6.62 86.50 0.57 4.48 16 13 C 0.06 2.22 5.47 86.54 0.47 2.69 16 14 N -0.54 -23.59 4.62 -898.87 -4.15 -27.74 16 15 C 0.21 11.20 4.72 85.56 0.40 11.61 16 16 C -0.52 -29.53 8.41 25.60 0.22 -29.32 16 17 H 0.07 3.64 7.13 -2.91 -0.02 3.62 16 18 C 0.00 0.05 5.46 84.65 0.46 0.52 16 19 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 20 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 C 0.04 1.53 5.62 86.38 0.49 2.02 16 25 C 0.07 2.22 6.35 86.35 0.55 2.77 16 26 C -0.16 -2.52 5.22 -10.79 -0.06 -2.58 16 27 C -0.16 -2.12 10.18 30.62 0.31 -1.81 16 28 C -0.20 -3.72 9.74 30.62 0.30 -3.42 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.42 8.03 7.87 -92.71 -0.73 7.30 16 35 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.10 3.04 7.07 -2.39 -0.02 3.02 16 37 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.09 3.57 6.67 -2.39 -0.02 3.56 16 39 H -0.04 -2.41 8.12 -2.39 -0.02 -2.42 16 40 H 0.01 0.47 7.97 -2.39 -0.02 0.45 16 41 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.08 3.02 7.99 -2.39 -0.02 3.01 16 44 H 0.16 4.57 3.92 -75.34 -0.30 4.28 16 45 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.11 1.80 7.39 -2.39 -0.02 1.78 16 47 H 0.10 1.30 8.05 -2.39 -0.02 1.28 16 48 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.10 2.23 5.02 -2.38 -0.01 2.22 16 Total: -1.00 -67.65 396.74 -1.30 -68.94 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -0.07 Total: 21.26 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 6.79 Total: 20.94 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -8.56 Total: -119.44 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.49 Total: -37.87 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.65 -1.30 -68.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602252949.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.381 kcal (2) G-P(sol) polarization free energy of solvation -67.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds