Wall clock time and date at job start Sat Apr 11 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46761 * 124.35173 * 2 1 4 4 C 1.54471 * 105.47548 * 162.98293 * 3 2 1 5 5 C 1.54626 * 101.76764 * 25.41551 * 4 3 2 6 6 H 1.08996 * 110.48849 * 216.39672 * 5 4 3 7 7 C 1.50692 * 110.48754 * 93.88147 * 5 4 3 8 8 O 1.21284 * 119.99726 * 334.94652 * 7 5 4 9 9 N 1.34775 * 120.00292 * 154.95450 * 7 5 4 10 10 C 1.46503 * 119.99773 * 4.44315 * 9 7 5 11 11 C 1.50700 * 109.47335 * 269.69565 * 10 9 7 12 12 H 1.07993 * 119.99871 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00025 * 180.27783 * 11 10 9 14 14 N 1.31513 * 119.99970 * 359.72124 * 13 11 10 15 15 Si 1.86797 * 119.99902 * 179.72347 * 13 11 10 16 16 H 1.48500 * 109.46939 * 60.00025 * 15 13 11 17 17 H 1.48499 * 109.46963 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47280 * 299.99794 * 15 13 11 19 19 C 1.46496 * 120.00144 * 184.44751 * 9 7 5 20 20 C 1.52994 * 109.47498 * 269.99404 * 19 9 7 21 21 N 1.46897 * 109.47543 * 179.97438 * 20 19 9 22 22 C 1.47013 * 111.00066 * 293.63837 * 21 20 19 23 23 C 1.53099 * 109.25462 * 177.60362 * 22 21 20 24 24 O 1.43018 * 109.26065 * 56.85247 * 23 22 21 25 25 C 1.43010 * 113.73505 * 301.32793 * 24 23 22 26 26 C 1.47014 * 111.00260 * 170.00063 * 21 20 19 27 27 C 1.34415 * 124.34969 * 179.97438 * 2 1 3 28 28 O 1.21278 * 124.94177 * 0.44322 * 27 2 1 29 29 H 1.08997 * 109.47501 * 89.99872 * 1 2 3 30 30 H 1.08999 * 109.47524 * 210.00635 * 1 2 3 31 31 H 1.08999 * 109.47368 * 330.00096 * 1 2 3 32 32 H 1.09008 * 110.24617 * 43.98206 * 3 2 1 33 33 H 1.08996 * 110.31794 * 282.02309 * 3 2 1 34 34 H 1.09011 * 110.97098 * 267.29361 * 4 3 2 35 35 H 1.09000 * 111.00437 * 143.55344 * 4 3 2 36 36 H 1.08999 * 109.46880 * 149.69064 * 10 9 7 37 37 H 1.08999 * 109.47181 * 29.69670 * 10 9 7 38 38 H 0.97000 * 120.00450 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.47139 * 30.00163 * 19 9 7 40 40 H 1.09005 * 109.46874 * 149.99790 * 19 9 7 41 41 H 1.08999 * 109.47545 * 300.00510 * 20 19 9 42 42 H 1.09005 * 109.46744 * 60.00306 * 20 19 9 43 43 H 1.08993 * 109.51089 * 297.54122 * 22 21 20 44 44 H 1.08997 * 109.50753 * 57.67529 * 22 21 20 45 45 H 1.08998 * 109.51060 * 296.91250 * 23 22 21 46 46 H 1.09009 * 109.54075 * 176.80657 * 23 22 21 47 47 H 1.08998 * 109.50687 * 298.73252 * 25 24 23 48 48 H 1.09001 * 109.54041 * 178.62631 * 25 24 23 49 49 H 1.08995 * 109.50861 * 302.33329 * 26 21 20 50 50 H 1.09008 * 109.50391 * 62.45906 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 0.4357 5 6 3.6898 -0.7379 0.0102 6 1 4.2345 -1.3456 0.7326 7 6 4.2838 -0.8971 -1.3656 8 8 4.2674 0.0324 -2.1445 9 7 4.8332 -2.0725 -1.7305 10 6 4.7666 -3.2240 -0.8272 11 6 5.9787 -3.2309 0.0682 12 1 6.7243 -2.4555 -0.0264 13 6 6.1389 -4.2308 1.0039 14 7 5.2311 -5.1754 1.1188 15 14 7.6452 -4.2437 2.1085 16 1 7.6825 -2.9936 2.9092 17 1 7.5800 -5.4135 3.0208 18 1 8.8702 -4.3338 1.2740 19 6 5.4970 -2.1986 -3.0303 20 6 4.4782 -2.6407 -4.0826 21 7 5.1437 -2.7666 -5.3861 22 6 5.5959 -1.4561 -5.8755 23 6 6.3345 -1.6407 -7.2038 24 8 5.4719 -2.2985 -8.1358 25 6 5.0131 -3.5780 -7.6914 26 6 4.2611 -3.4132 -6.3681 27 6 2.2234 -1.1097 0.0005 28 8 1.7946 -2.2442 -0.0067 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.8984 1.9383 0.7102 33 1 2.3309 1.6442 -0.9997 34 1 3.8269 0.8448 1.5142 35 1 4.4758 1.3009 -0.0961 36 1 4.7414 -4.1435 -1.4120 37 1 3.8652 -3.1562 -0.2180 38 1 5.3439 -5.8791 1.7769 39 1 5.9209 -1.2361 -3.3167 40 1 6.2930 -2.9401 -2.9613 41 1 4.0543 -3.6032 -3.7962 42 1 3.6822 -1.8992 -4.1516 43 1 4.7338 -0.8063 -6.0256 44 1 6.2683 -1.0068 -5.1446 45 1 7.2264 -2.2463 -7.0433 46 1 6.6225 -0.6665 -7.5993 47 1 5.8665 -4.2400 -7.5451 48 1 4.3448 -4.0054 -8.4390 49 1 3.9590 -4.3923 -5.9967 50 1 3.3775 -2.7946 -6.5261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614266387.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:05 Heat of formation + Delta-G solvation = -96.937498 kcal Electronic energy + Delta-G solvation = -31422.953516 eV Core-core repulsion = 27257.673300 eV Total energy + Delta-G solvation = -4165.280216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65019 -39.56357 -38.48010 -36.33316 -35.88570 -34.77911 -32.73157 -32.46151 -31.23863 -29.90373 -27.72166 -27.25255 -26.61415 -25.68290 -24.03874 -23.01394 -22.68412 -21.34489 -20.32247 -19.72195 -18.32351 -17.15300 -16.59977 -16.47208 -16.38969 -16.13221 -15.60568 -15.40503 -15.10048 -15.00883 -14.94832 -14.50682 -14.30497 -14.14038 -13.67120 -13.51990 -13.09475 -12.97346 -12.81765 -12.44645 -12.40333 -12.29911 -12.26647 -12.14230 -11.93307 -11.52687 -11.42252 -11.29344 -11.13692 -11.05600 -10.95040 -10.71560 -10.65140 -10.38411 -10.06600 -9.83929 -9.66697 -9.49646 -9.17820 -8.53816 -8.50394 -8.34099 -7.76780 -6.12653 -4.21897 2.73754 3.07378 3.25455 3.30047 3.31436 3.35758 3.58942 3.81832 4.16284 4.35316 4.67549 4.69199 4.85467 4.99903 5.02353 5.03836 5.12636 5.19374 5.21618 5.26751 5.32683 5.34626 5.46085 5.52088 5.53495 5.57540 5.63676 5.64283 5.73568 5.77520 5.82914 5.94642 5.96511 6.03234 6.06941 6.24710 6.27865 6.42231 6.66955 6.74264 6.99199 7.04961 7.10148 7.23853 7.36643 7.53915 7.78502 8.08864 8.24879 8.45779 8.75879 8.91030 9.45132 10.93672 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007732 B = 0.004354 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.391269 B = 6429.573678 C = 8806.123637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.627 5.627 3 C 0.108 3.892 4 C -0.114 4.114 5 C -0.148 4.148 6 H 0.147 0.853 7 C 0.536 3.464 8 O -0.569 6.569 9 N -0.583 5.583 10 C 0.226 3.774 11 C -0.544 4.544 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.884 5.884 15 Si 0.896 3.104 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.127 3.873 20 C 0.045 3.955 21 N -0.532 5.532 22 C 0.015 3.985 23 C 0.064 3.936 24 O -0.390 6.390 25 C 0.065 3.935 26 C 0.018 3.982 27 C 0.533 3.467 28 O -0.507 6.507 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.036 0.964 37 H 0.060 0.940 38 H 0.266 0.734 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.042 0.958 44 H 0.091 0.909 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.060 0.940 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 9.835 -8.203 13.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.363 5.363 3 C -0.015 4.015 4 C -0.152 4.152 5 C -0.173 4.173 6 H 0.164 0.836 7 C 0.323 3.677 8 O -0.451 6.451 9 N -0.312 5.312 10 C 0.107 3.893 11 C -0.583 4.583 12 H 0.079 0.921 13 C -0.137 4.137 14 N -0.521 5.521 15 Si 0.723 3.277 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C 0.003 3.997 20 C -0.084 4.084 21 N -0.258 5.258 22 C -0.113 4.113 23 C -0.012 4.012 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.110 4.110 27 C 0.319 3.681 28 O -0.381 6.381 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.114 0.886 47 H 0.078 0.922 48 H 0.113 0.887 49 H 0.105 0.895 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.909 9.252 -8.616 13.233 hybrid contribution 0.108 0.178 1.003 1.025 sum -3.801 9.430 -7.613 12.701 Atomic orbital electron populations 1.21474 0.78360 1.02821 1.01580 1.48130 1.06240 1.07508 1.74455 1.22070 0.90520 0.86908 1.01984 1.22503 0.97094 0.93634 1.01950 1.22156 0.95688 1.00019 0.99396 0.83552 1.19604 0.78278 0.82586 0.87230 1.90583 1.60354 1.40685 1.53454 1.48192 1.53285 1.12336 1.17424 1.19715 0.98836 0.82320 0.88437 1.21425 1.06977 1.11241 1.18656 0.92149 1.24947 0.96468 0.95146 0.97125 1.69943 1.34021 1.13185 1.34949 0.86602 0.83100 0.77611 0.80398 1.20112 1.21167 1.20133 1.21211 0.94572 1.01988 0.81953 1.22498 0.96278 1.01476 0.88153 1.62143 1.39760 1.21189 1.02699 1.22834 1.00182 0.90762 0.97507 1.22683 0.92513 0.97746 0.88307 1.87948 1.66643 1.32609 1.43622 1.22649 0.98351 0.85394 0.94784 1.22770 0.94745 1.00399 0.93132 1.20344 0.87976 0.84409 0.75379 1.90764 1.77905 1.20670 1.48793 0.92976 0.90730 0.91278 0.90769 0.90652 0.89609 0.88416 0.94638 0.92244 0.92456 0.91084 0.89313 0.90289 0.94634 0.93989 0.89111 0.92184 0.88632 0.92169 0.88676 0.89502 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.18 10.96 59.85 0.66 1.84 16 2 N -0.63 -9.53 3.33 -180.30 -0.60 -10.13 16 3 C 0.11 1.35 7.21 -3.13 -0.02 1.33 16 4 C -0.11 -1.58 6.39 -25.10 -0.16 -1.74 16 5 C -0.15 -2.78 2.37 -91.79 -0.22 -2.99 16 6 H 0.15 3.04 6.47 -51.93 -0.34 2.70 16 7 C 0.54 11.00 6.79 -10.99 -0.07 10.93 16 8 O -0.57 -11.88 15.50 5.55 0.09 -11.80 16 9 N -0.58 -12.43 2.46 -175.07 -0.43 -12.86 16 10 C 0.23 5.56 4.76 -5.19 -0.02 5.54 16 11 C -0.54 -14.12 8.70 -34.44 -0.30 -14.42 16 12 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.88 -24.96 13.29 55.43 0.74 -24.22 16 15 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.13 2.37 5.31 -4.05 -0.02 2.35 16 20 C 0.04 0.76 5.28 -3.83 -0.02 0.74 16 21 N -0.53 -7.86 4.73 -234.32 -1.11 -8.97 16 22 C 0.02 0.21 5.44 -3.71 -0.02 0.19 16 23 C 0.06 0.75 7.01 37.21 0.26 1.01 16 24 O -0.39 -5.06 10.83 -35.23 -0.38 -5.44 16 25 C 0.07 0.74 7.01 37.21 0.26 1.00 16 26 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 27 C 0.53 10.34 7.23 -10.86 -0.08 10.27 16 28 O -0.51 -11.78 16.03 5.56 0.09 -11.69 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.10 1.35 7.46 -51.93 -0.39 0.96 16 36 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.06 1.58 5.08 -51.93 -0.26 1.32 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.07 1.30 5.86 -51.93 -0.30 0.99 16 40 H 0.09 1.71 8.07 -51.93 -0.42 1.29 16 41 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 42 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 50 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -32.14 397.83 -8.84 -40.98 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -8.33 Total: 4.74 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: 0.12 Total: 17.93 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -1.40 Total: -56.18 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.21 Total: -28.93 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.14 -8.84 -40.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614266387.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.953 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds