Wall clock time and date at job start Sat Apr 11 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46761 * 124.35173 * 2 1 4 4 C 1.54471 * 105.47548 * 162.98293 * 3 2 1 5 5 C 1.54626 * 101.76764 * 25.41551 * 4 3 2 6 6 H 1.08996 * 110.48849 * 216.39672 * 5 4 3 7 7 C 1.50692 * 110.48754 * 93.88147 * 5 4 3 8 8 O 1.21284 * 119.99726 * 334.94652 * 7 5 4 9 9 N 1.34775 * 120.00292 * 154.95450 * 7 5 4 10 10 C 1.46503 * 119.99773 * 4.44315 * 9 7 5 11 11 C 1.50700 * 109.47335 * 269.69565 * 10 9 7 12 12 H 1.07993 * 119.99871 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00025 * 180.27783 * 11 10 9 14 14 N 1.31513 * 119.99970 * 359.72124 * 13 11 10 15 15 Si 1.86797 * 119.99902 * 179.72347 * 13 11 10 16 16 H 1.48500 * 109.46939 * 60.00025 * 15 13 11 17 17 H 1.48499 * 109.46963 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47280 * 299.99794 * 15 13 11 19 19 C 1.46496 * 120.00144 * 184.44751 * 9 7 5 20 20 C 1.52994 * 109.47498 * 269.99404 * 19 9 7 21 21 N 1.46897 * 109.47543 * 179.97438 * 20 19 9 22 22 C 1.47013 * 111.00066 * 293.63837 * 21 20 19 23 23 C 1.53099 * 109.25462 * 177.60362 * 22 21 20 24 24 O 1.43018 * 109.26065 * 56.85247 * 23 22 21 25 25 C 1.43010 * 113.73505 * 301.32793 * 24 23 22 26 26 C 1.47014 * 111.00260 * 170.00063 * 21 20 19 27 27 C 1.34415 * 124.34969 * 179.97438 * 2 1 3 28 28 O 1.21278 * 124.94177 * 0.44322 * 27 2 1 29 29 H 1.08997 * 109.47501 * 89.99872 * 1 2 3 30 30 H 1.08999 * 109.47524 * 210.00635 * 1 2 3 31 31 H 1.08999 * 109.47368 * 330.00096 * 1 2 3 32 32 H 1.09008 * 110.24617 * 43.98206 * 3 2 1 33 33 H 1.08996 * 110.31794 * 282.02309 * 3 2 1 34 34 H 1.09011 * 110.97098 * 267.29361 * 4 3 2 35 35 H 1.09000 * 111.00437 * 143.55344 * 4 3 2 36 36 H 1.08999 * 109.46880 * 149.69064 * 10 9 7 37 37 H 1.08999 * 109.47181 * 29.69670 * 10 9 7 38 38 H 0.97000 * 120.00450 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.47139 * 30.00163 * 19 9 7 40 40 H 1.09005 * 109.46874 * 149.99790 * 19 9 7 41 41 H 1.08999 * 109.47545 * 300.00510 * 20 19 9 42 42 H 1.09005 * 109.46744 * 60.00306 * 20 19 9 43 43 H 1.08993 * 109.51089 * 297.54122 * 22 21 20 44 44 H 1.08997 * 109.50753 * 57.67529 * 22 21 20 45 45 H 1.08998 * 109.51060 * 296.91250 * 23 22 21 46 46 H 1.09009 * 109.54075 * 176.80657 * 23 22 21 47 47 H 1.08998 * 109.50687 * 298.73252 * 25 24 23 48 48 H 1.09001 * 109.54041 * 178.62631 * 25 24 23 49 49 H 1.08995 * 109.50861 * 302.33329 * 26 21 20 50 50 H 1.09008 * 109.50391 * 62.45906 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 0.4357 5 6 3.6898 -0.7379 0.0102 6 1 4.2345 -1.3456 0.7326 7 6 4.2838 -0.8971 -1.3656 8 8 4.2674 0.0324 -2.1445 9 7 4.8332 -2.0725 -1.7305 10 6 4.7666 -3.2240 -0.8272 11 6 5.9787 -3.2309 0.0682 12 1 6.7243 -2.4555 -0.0264 13 6 6.1389 -4.2308 1.0039 14 7 5.2311 -5.1754 1.1188 15 14 7.6452 -4.2437 2.1085 16 1 7.6825 -2.9936 2.9092 17 1 7.5800 -5.4135 3.0208 18 1 8.8702 -4.3338 1.2740 19 6 5.4970 -2.1986 -3.0303 20 6 4.4782 -2.6407 -4.0826 21 7 5.1437 -2.7666 -5.3861 22 6 5.5959 -1.4561 -5.8755 23 6 6.3345 -1.6407 -7.2038 24 8 5.4719 -2.2985 -8.1358 25 6 5.0131 -3.5780 -7.6914 26 6 4.2611 -3.4132 -6.3681 27 6 2.2234 -1.1097 0.0005 28 8 1.7946 -2.2442 -0.0067 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.8984 1.9383 0.7102 33 1 2.3309 1.6442 -0.9997 34 1 3.8269 0.8448 1.5142 35 1 4.4758 1.3009 -0.0961 36 1 4.7414 -4.1435 -1.4120 37 1 3.8652 -3.1562 -0.2180 38 1 5.3439 -5.8791 1.7769 39 1 5.9209 -1.2361 -3.3167 40 1 6.2930 -2.9401 -2.9613 41 1 4.0543 -3.6032 -3.7962 42 1 3.6822 -1.8992 -4.1516 43 1 4.7338 -0.8063 -6.0256 44 1 6.2683 -1.0068 -5.1446 45 1 7.2264 -2.2463 -7.0433 46 1 6.6225 -0.6665 -7.5993 47 1 5.8665 -4.2400 -7.5451 48 1 4.3448 -4.0054 -8.4390 49 1 3.9590 -4.3923 -5.9967 50 1 3.3775 -2.7946 -6.5261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614266387.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:04 Heat of formation + Delta-G solvation = -120.072083 kcal Electronic energy + Delta-G solvation = -31423.956707 eV Core-core repulsion = 27257.673300 eV Total energy + Delta-G solvation = -4166.283407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.11084 -40.69180 -39.99011 -37.78709 -37.20503 -36.40337 -34.56607 -33.85163 -32.25505 -31.31425 -29.20456 -28.89596 -27.76469 -26.98096 -25.10986 -24.92238 -24.00852 -22.64267 -21.42344 -21.14142 -19.86187 -18.81941 -18.35987 -17.96440 -17.65001 -17.22384 -16.96266 -16.72761 -16.62159 -16.26653 -16.07663 -15.96567 -15.75406 -15.48944 -14.92330 -14.74934 -14.56433 -14.33386 -14.29839 -14.21846 -13.73425 -13.65878 -13.50449 -13.40938 -13.17536 -13.10161 -12.86667 -12.63877 -12.56527 -12.36518 -12.32047 -12.21750 -12.10151 -11.79916 -11.75316 -11.52018 -11.09856 -10.80650 -10.74035 -10.57969 -9.74875 -9.64217 -9.47515 -8.18027 -6.35484 1.19348 1.43401 1.45209 1.52949 1.58230 2.00269 2.17415 2.42516 2.78109 2.94376 3.11717 3.36566 3.47085 3.59305 3.75567 3.87572 3.93499 4.00394 4.06257 4.15259 4.24253 4.27912 4.33625 4.36133 4.38039 4.52236 4.53924 4.62608 4.66935 4.70924 4.72544 4.77132 4.80659 4.81706 4.86754 4.90835 4.96334 4.98364 5.11240 5.27819 5.54551 5.59049 5.71492 5.82353 5.87636 5.94767 6.03701 6.13011 6.45094 6.77581 7.03952 7.13656 7.37004 8.88072 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007732 B = 0.004354 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3620.391269 B = 6429.573678 C = 8806.123637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.618 5.618 3 C 0.108 3.892 4 C -0.106 4.106 5 C -0.154 4.154 6 H 0.119 0.881 7 C 0.534 3.466 8 O -0.572 6.572 9 N -0.592 5.592 10 C 0.248 3.752 11 C -0.548 4.548 12 H 0.062 0.938 13 C 0.018 3.982 14 N -0.922 5.922 15 Si 0.963 3.037 16 H -0.264 1.264 17 H -0.285 1.285 18 H -0.269 1.269 19 C 0.130 3.870 20 C 0.061 3.939 21 N -0.536 5.536 22 C 0.016 3.984 23 C 0.068 3.932 24 O -0.402 6.402 25 C 0.068 3.932 26 C 0.015 3.985 27 C 0.521 3.479 28 O -0.561 6.561 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.009 0.991 37 H 0.037 0.963 38 H 0.267 0.733 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.018 0.982 43 H 0.030 0.970 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.118 0.882 47 H 0.065 0.935 48 H 0.120 0.880 49 H 0.091 0.909 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.264 12.133 -8.322 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.352 5.352 3 C -0.014 4.014 4 C -0.144 4.144 5 C -0.179 4.179 6 H 0.137 0.863 7 C 0.321 3.679 8 O -0.454 6.454 9 N -0.321 5.321 10 C 0.127 3.873 11 C -0.586 4.586 12 H 0.080 0.920 13 C -0.183 4.183 14 N -0.560 5.560 15 Si 0.787 3.213 16 H -0.189 1.189 17 H -0.210 1.210 18 H -0.194 1.194 19 C 0.006 3.994 20 C -0.068 4.068 21 N -0.262 5.262 22 C -0.113 4.113 23 C -0.009 4.009 24 O -0.321 6.321 25 C -0.009 4.009 26 C -0.113 4.113 27 C 0.307 3.693 28 O -0.440 6.440 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.027 0.973 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.036 0.964 43 H 0.049 0.951 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.136 0.864 47 H 0.084 0.916 48 H 0.138 0.862 49 H 0.109 0.891 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.288 11.626 -8.761 14.924 hybrid contribution -0.150 -0.482 0.981 1.104 sum -3.438 11.144 -7.780 14.019 Atomic orbital electron populations 1.21753 0.76255 1.04371 1.02452 1.48318 1.07704 1.07103 1.72070 1.22324 0.89282 0.86358 1.03414 1.22615 0.98377 0.89775 1.03622 1.22165 0.95114 1.03133 0.97445 0.86275 1.19939 0.77853 0.82069 0.88029 1.90563 1.60493 1.40480 1.53867 1.48168 1.54040 1.11917 1.17964 1.19214 0.97667 0.82384 0.88057 1.21619 1.07065 1.11147 1.18777 0.92020 1.25784 0.99322 0.94629 0.98520 1.70082 1.36085 1.14000 1.35865 0.85538 0.79344 0.77921 0.78489 1.18895 1.21038 1.19429 1.21249 0.94644 1.02122 0.81348 1.22198 0.95317 0.99883 0.89388 1.62170 1.39738 1.22133 1.02112 1.22892 0.99876 0.89776 0.98710 1.22771 0.92063 0.99055 0.86983 1.87938 1.66874 1.33240 1.44009 1.22763 0.98805 0.85052 0.94236 1.22887 0.94561 1.00231 0.93632 1.20548 0.88677 0.84683 0.75397 1.90723 1.78726 1.22908 1.51640 0.92448 0.92090 0.86813 0.85933 0.90664 0.87012 0.88075 0.97290 0.94490 0.92440 0.90322 0.90081 0.91783 0.96389 0.95126 0.89250 0.91533 0.86363 0.91623 0.86210 0.89068 0.94845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.02 10.96 127.77 1.40 3.42 16 2 N -0.62 -17.93 3.33 -842.94 -2.81 -20.74 16 3 C 0.11 2.36 7.21 86.83 0.63 2.99 16 4 C -0.11 -2.75 6.39 31.65 0.20 -2.55 16 5 C -0.15 -5.87 2.37 -11.55 -0.03 -5.89 16 6 H 0.12 5.17 6.47 -2.39 -0.02 5.16 16 7 C 0.53 22.39 6.79 87.65 0.59 22.99 16 8 O -0.57 -23.86 15.50 -3.04 -0.05 -23.91 16 9 N -0.59 -26.32 2.46 -826.17 -2.03 -28.35 16 10 C 0.25 12.87 4.76 85.63 0.41 13.28 16 11 C -0.55 -29.24 8.70 25.60 0.22 -29.02 16 12 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 13 C 0.02 0.97 5.46 84.65 0.46 1.43 16 14 N -0.92 -53.78 13.29 21.45 0.28 -53.49 16 15 Si 0.96 42.17 29.54 68.60 2.03 44.20 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 19 C 0.13 5.03 5.31 86.38 0.46 5.49 16 20 C 0.06 2.20 5.28 86.30 0.46 2.65 16 21 N -0.54 -15.98 4.73 -895.24 -4.23 -20.21 16 22 C 0.02 0.41 5.44 86.31 0.47 0.88 16 23 C 0.07 1.47 7.01 72.02 0.50 1.98 16 24 O -0.40 -9.73 10.83 -148.98 -1.61 -11.34 16 25 C 0.07 1.44 7.01 72.01 0.50 1.94 16 26 C 0.01 0.38 5.64 86.31 0.49 0.87 16 27 C 0.52 20.70 7.23 87.90 0.64 21.34 16 28 O -0.56 -27.59 16.03 -3.02 -0.05 -27.64 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.52 7.93 -2.39 -0.02 1.50 16 31 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.10 2.58 7.46 -2.39 -0.02 2.56 16 36 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 37 H 0.04 2.11 5.08 -2.39 -0.01 2.10 16 38 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 39 H 0.08 2.91 5.86 -2.39 -0.01 2.90 16 40 H 0.08 3.24 8.07 -2.38 -0.02 3.22 16 41 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 42 H 0.02 0.70 8.12 -2.38 -0.02 0.68 16 43 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.09 2.37 6.38 -2.39 -0.02 2.36 16 45 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.09 2.22 8.09 -2.39 -0.02 2.20 16 50 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -72.92 397.83 -0.14 -73.06 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.92 Total: 26.61 kcal Atomic # 6 Polarization: 34.40 SS G_CDS: 7.41 Total: 41.81 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -8.78 Total: -122.79 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -1.71 Total: -62.89 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -72.92 -0.14 -73.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614266387.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.012 kcal (2) G-P(sol) polarization free energy of solvation -72.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds