Wall clock time and date at job start Sat Apr 11 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.41604 * 113.99572 * 2 1 4 4 C 1.46496 * 120.00168 * 269.99883 * 3 2 1 5 5 C 1.34772 * 120.00013 * 89.99962 * 3 2 1 6 6 O 1.21282 * 120.00078 * 179.97438 * 5 3 2 7 7 C 1.50705 * 120.00100 * 359.97438 * 5 3 2 8 8 C 1.53043 * 109.46297 * 179.97438 * 7 5 3 9 9 C 1.53183 * 109.31382 * 178.62965 * 8 7 5 10 10 N 1.46928 * 108.77630 * 54.63351 * 9 8 7 11 11 C 1.34783 * 120.62972 * 126.36896 * 10 9 8 12 12 O 1.21586 * 120.00027 * 354.51060 * 11 10 9 13 13 N 1.34774 * 119.99757 * 174.51275 * 11 10 9 14 14 C 1.46503 * 119.99463 * 184.96267 * 13 11 10 15 15 C 1.53001 * 109.46828 * 185.01755 * 14 13 11 16 16 C 1.50694 * 115.55429 * 281.34596 * 15 14 13 17 17 H 1.08007 * 120.00284 * 147.06870 * 16 15 14 18 18 C 1.37878 * 120.00097 * 327.07518 * 16 15 14 19 19 N 1.31510 * 120.00346 * 163.95806 * 18 16 15 20 20 Si 1.86800 * 119.99788 * 343.95811 * 18 16 15 21 21 H 1.48498 * 109.46974 * 95.95570 * 20 18 16 22 22 H 1.48495 * 109.47286 * 215.95627 * 20 18 16 23 23 H 1.48503 * 109.46983 * 335.96088 * 20 18 16 24 24 C 1.53007 * 117.49597 * 135.63690 * 15 14 13 25 25 C 1.53001 * 60.00142 * 252.51187 * 24 15 14 26 26 C 1.46924 * 118.73876 * 306.64453 * 10 9 8 27 27 C 1.52759 * 109.00825 * 53.30918 * 26 10 9 28 28 H 1.09008 * 109.46619 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47650 * 299.99934 * 1 2 3 30 30 H 1.08997 * 109.47219 * 60.00485 * 1 2 3 31 31 H 1.09000 * 109.47103 * 270.00458 * 4 3 2 32 32 H 1.09005 * 109.47143 * 30.00268 * 4 3 2 33 33 H 1.09001 * 109.47216 * 149.99914 * 4 3 2 34 34 H 1.09001 * 109.46095 * 299.97247 * 7 5 3 35 35 H 1.09002 * 109.49452 * 58.67132 * 8 7 5 36 36 H 1.09007 * 109.51890 * 298.60092 * 8 7 5 37 37 H 1.08999 * 109.58703 * 294.84819 * 9 8 7 38 38 H 1.08998 * 109.70775 * 174.49241 * 9 8 7 39 39 H 0.96990 * 120.00633 * 4.95896 * 13 11 10 40 40 H 1.08998 * 109.47428 * 305.01394 * 14 13 11 41 41 H 1.08997 * 109.47316 * 65.02446 * 14 13 11 42 42 H 0.97003 * 120.00388 * 180.02562 * 19 18 16 43 43 H 1.08997 * 117.49832 * 0.02562 * 24 15 14 44 44 H 1.09000 * 117.49515 * 145.02194 * 24 15 14 45 45 H 1.08996 * 117.50354 * 252.51435 * 25 24 15 46 46 H 1.09000 * 117.51937 * 107.47957 * 25 24 15 47 47 H 1.09006 * 109.58479 * 173.14435 * 26 10 9 48 48 H 1.08998 * 109.58594 * 293.56738 * 26 10 9 49 49 H 1.09003 * 109.56096 * 185.55112 * 27 26 10 50 50 H 1.09001 * 109.38714 * 65.51833 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0048 1.2937 0.0000 4 6 2.3028 1.9629 -1.2687 5 6 2.2789 1.9093 1.1672 6 8 2.7725 3.0171 1.1672 7 6 1.9719 1.2211 2.4723 8 6 2.3771 2.1296 3.6354 9 6 2.0323 1.4413 4.9598 10 7 2.6637 0.1148 4.9818 11 6 3.4580 -0.2506 6.0076 12 8 3.7385 0.5533 6.8756 13 7 3.9413 -1.5071 6.0710 14 6 4.7142 -1.9364 7.2392 15 6 5.2469 -3.3516 7.0062 16 6 4.2507 -4.4633 7.2122 17 1 4.3102 -5.3598 6.6127 18 6 3.2631 -4.3361 8.1658 19 7 2.2191 -5.1355 8.1421 20 14 3.4079 -3.0281 9.4916 21 1 2.6462 -1.8212 9.0814 22 1 2.8557 -3.5523 10.7665 23 1 4.8369 -2.6710 9.6806 24 6 6.7037 -3.6290 7.3831 25 6 6.2983 -3.5391 5.9105 26 6 2.4176 -0.8034 3.8616 27 6 2.7538 -0.0920 2.5522 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 3.3155 1.7108 -1.5833 32 1 1.5937 1.6337 -2.0284 33 1 2.2206 3.0419 -1.1383 34 1 0.9038 1.0115 2.5299 35 1 1.8373 3.0739 3.5646 36 1 3.4496 2.3197 3.5925 37 1 0.9510 1.3328 5.0444 38 1 2.4059 2.0377 5.7921 39 1 3.7775 -2.1271 5.3434 40 1 5.5503 -1.2541 7.3925 41 1 4.0736 -1.9301 8.1210 42 1 1.5241 -5.0458 8.8128 43 1 7.2823 -2.8034 7.7974 44 1 6.9416 -4.6158 7.7803 45 1 6.2695 -4.4667 5.3388 46 1 6.6100 -2.6544 5.3554 47 1 3.0474 -1.6867 3.9681 48 1 1.3684 -1.0987 3.8549 49 1 2.4819 -0.7291 1.7105 50 1 3.8228 0.1183 2.5187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813153653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:07 Heat of formation + Delta-G solvation = -31.077007 kcal Electronic energy + Delta-G solvation = -31160.388840 eV Core-core repulsion = 26997.964548 eV Total energy + Delta-G solvation = -4162.424291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.77808 -40.97105 -39.09328 -38.46055 -38.04084 -35.22350 -34.37001 -34.05386 -33.89863 -32.10337 -29.18769 -28.57738 -27.70872 -26.99816 -25.69806 -24.24266 -23.18889 -22.53033 -21.33024 -21.29107 -20.48534 -19.59396 -18.68418 -18.17345 -17.82837 -17.69596 -17.14555 -17.08229 -16.47165 -16.05091 -15.83174 -15.52363 -15.47032 -15.25064 -15.19555 -14.96774 -14.64353 -14.51414 -14.41758 -13.96484 -13.87072 -13.69869 -13.63006 -13.38276 -13.01401 -12.97786 -12.67071 -12.49819 -12.32832 -12.14951 -11.93644 -11.89870 -11.81929 -11.52876 -11.44077 -11.31506 -11.18415 -10.85228 -10.75025 -10.39319 -10.13366 -10.08172 -9.46992 -8.38919 -6.29718 0.86431 1.26914 1.33058 1.34769 1.40689 1.62583 2.09487 2.25509 2.75948 2.84490 3.01776 3.50123 3.60320 3.68356 3.86128 3.94548 4.04021 4.14407 4.18407 4.27210 4.34213 4.37712 4.42954 4.44320 4.45243 4.49254 4.52764 4.60551 4.67549 4.71538 4.79047 4.80405 4.82917 4.84671 4.92167 4.96991 5.00235 5.08928 5.20362 5.22551 5.33937 5.47865 5.53531 5.60448 5.65922 5.91540 6.28674 6.30013 6.67843 6.90120 6.98109 7.29264 7.52824 8.75912 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.002962 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.256867 B = 9449.982497 C = 9680.093746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 O -0.145 6.145 3 N -0.483 5.483 4 C 0.081 3.919 5 C 0.528 3.472 6 O -0.558 6.558 7 C -0.094 4.094 8 C -0.104 4.104 9 C 0.129 3.871 10 N -0.628 5.628 11 C 0.697 3.303 12 O -0.641 6.641 13 N -0.720 5.720 14 C 0.172 3.828 15 C -0.035 4.035 16 C -0.480 4.480 17 H 0.053 0.947 18 C 0.044 3.956 19 N -0.922 5.922 20 Si 0.935 3.065 21 H -0.296 1.296 22 H -0.302 1.302 23 H -0.253 1.253 24 C -0.192 4.192 25 C -0.158 4.158 26 C 0.110 3.890 27 C -0.112 4.112 28 H 0.131 0.869 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.409 0.591 40 H 0.058 0.942 41 H 0.027 0.973 42 H 0.267 0.733 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.113 0.887 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 11.710 -20.748 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 O -0.149 6.149 3 N -0.261 5.261 4 C -0.059 4.059 5 C 0.319 3.681 6 O -0.436 6.436 7 C -0.115 4.115 8 C -0.143 4.143 9 C 0.006 3.994 10 N -0.366 5.366 11 C 0.399 3.601 12 O -0.524 6.524 13 N -0.376 5.376 14 C 0.048 3.952 15 C -0.036 4.036 16 C -0.517 4.517 17 H 0.071 0.929 18 C -0.157 4.157 19 N -0.561 5.561 20 Si 0.768 3.232 21 H -0.225 1.225 22 H -0.231 1.231 23 H -0.178 1.178 24 C -0.230 4.230 25 C -0.195 4.195 26 C -0.012 4.012 27 C -0.151 4.151 28 H 0.149 0.851 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.141 0.859 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.247 0.753 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.114 0.886 47 H 0.101 0.899 48 H 0.112 0.888 49 H 0.131 0.869 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.894 12.597 -20.069 24.195 hybrid contribution -0.452 0.104 0.655 0.802 sum -5.346 12.701 -19.414 23.807 Atomic orbital electron populations 1.23675 0.79769 1.05826 1.02099 1.90647 1.21989 1.05547 1.96720 1.50019 1.58534 1.10702 1.06837 1.22046 1.02645 0.97566 0.83655 1.21032 0.76897 0.84655 0.85562 1.90742 1.45505 1.20675 1.86702 1.21273 1.03586 0.96121 0.90548 1.21666 1.01920 0.98432 0.92272 1.21553 0.97869 0.81870 0.98058 1.47352 1.50083 1.17861 1.21259 1.16128 0.79135 0.82468 0.82409 1.90818 1.65788 1.52806 1.43007 1.45115 1.57506 1.11548 1.23469 1.20958 0.93369 0.94422 0.86491 1.19412 0.89292 0.91411 1.03475 1.20419 1.10443 1.01783 1.19056 0.92914 1.25425 0.94250 0.97154 0.98838 1.70014 1.09079 1.41389 1.35571 0.86088 0.79412 0.78541 0.79199 1.22485 1.23063 1.17789 1.23174 0.99113 1.02198 0.98521 1.22808 1.03388 1.02413 0.90920 1.21761 1.03197 0.91844 0.84430 1.21817 0.99779 0.95237 0.98250 0.85119 0.92380 0.91846 0.91431 0.88026 0.90114 0.85885 0.89097 0.93020 0.89264 0.90741 0.75256 0.92414 0.95585 0.92398 0.89287 0.89444 0.89216 0.88616 0.89875 0.88829 0.86917 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.11 11.44 113.37 1.30 1.19 16 2 O -0.15 -1.83 8.77 -38.79 -0.34 -2.17 16 3 N -0.48 -7.59 3.34 -484.52 -1.62 -9.21 16 4 C 0.08 0.94 10.81 127.77 1.38 2.32 16 5 C 0.53 10.78 7.11 87.66 0.62 11.41 16 6 O -0.56 -15.24 15.56 -3.04 -0.05 -15.28 16 7 C -0.09 -1.67 2.08 -11.51 -0.02 -1.70 16 8 C -0.10 -2.27 4.65 30.67 0.14 -2.13 16 9 C 0.13 3.25 6.44 86.36 0.56 3.81 16 10 N -0.63 -18.66 2.98 -837.76 -2.50 -21.16 16 11 C 0.70 27.78 8.29 179.05 1.48 29.27 16 12 O -0.64 -30.55 15.74 -3.99 -0.06 -30.62 16 13 N -0.72 -28.66 5.44 -478.53 -2.60 -31.26 16 14 C 0.17 7.65 4.65 86.38 0.40 8.05 16 15 C -0.03 -1.52 1.30 -52.92 -0.07 -1.59 16 16 C -0.48 -25.39 9.56 25.60 0.24 -25.15 16 17 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 18 C 0.04 2.43 5.40 84.66 0.46 2.89 16 19 N -0.92 -54.51 13.96 21.45 0.30 -54.21 16 20 Si 0.94 47.26 24.32 68.60 1.67 48.93 16 21 H -0.30 -15.68 6.87 99.48 0.68 -15.00 16 22 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 23 H -0.25 -12.15 6.80 99.48 0.68 -11.48 16 24 C -0.19 -7.37 9.88 30.60 0.30 -7.07 16 25 C -0.16 -5.68 9.93 30.60 0.30 -5.37 16 26 C 0.11 2.41 6.36 86.22 0.55 2.96 16 27 C -0.11 -2.06 5.20 30.53 0.16 -1.90 16 28 H 0.13 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.06 0.36 7.13 -2.39 -0.02 0.35 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.08 1.07 7.42 -2.39 -0.02 1.05 16 34 H 0.12 1.57 7.13 -2.39 -0.02 1.55 16 35 H 0.09 1.80 8.07 -2.39 -0.02 1.78 16 36 H 0.05 1.39 8.13 -2.38 -0.02 1.37 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 2.26 6.99 -2.39 -0.02 2.24 16 39 H 0.41 14.64 5.97 -92.72 -0.55 14.08 16 40 H 0.06 2.51 7.92 -2.39 -0.02 2.49 16 41 H 0.03 1.33 1.79 -2.39 0.00 1.33 16 42 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.09 3.11 8.09 -2.39 -0.02 3.09 16 44 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 45 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 46 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 47 H 0.08 1.92 5.66 -2.38 -0.01 1.91 16 48 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.11 1.72 5.99 -2.39 -0.01 1.70 16 50 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -75.45 392.09 2.96 -72.49 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.35 Total: 25.50 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 7.81 Total: 16.99 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -6.42 Total: -115.84 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -0.45 Total: -48.07 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.67 Total: 48.93 kcal Total: -75.45 2.96 -72.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813153653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.416 kcal (2) G-P(sol) polarization free energy of solvation -75.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds