Wall clock time and date at job start Sat Apr 11 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00463 * 2 1 4 4 C 1.50697 * 109.47527 * 270.00600 * 3 2 1 5 5 H 1.08009 * 119.99486 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00223 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00214 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00039 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.46965 * 90.00106 * 8 6 4 10 10 H 1.48501 * 109.47201 * 210.00158 * 8 6 4 11 11 H 1.48496 * 109.47104 * 330.00331 * 8 6 4 12 12 C 1.34776 * 119.99801 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99940 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00035 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.47184 * 180.02562 * 14 12 2 16 16 N 1.46898 * 109.47006 * 180.02562 * 15 14 12 17 17 C 1.46839 * 111.00175 * 45.79285 * 16 15 14 18 18 C 1.53038 * 109.52321 * 185.83828 * 17 16 15 19 19 C 1.53111 * 109.28032 * 300.82001 * 18 17 16 20 20 N 1.46495 * 109.52586 * 177.55998 * 19 18 17 21 21 C 1.47090 * 125.56260 * 120.31634 * 20 19 18 22 22 C 1.54095 * 103.77949 * 179.97438 * 21 20 19 23 23 O 1.45699 * 104.00727 * 0.02562 * 22 21 20 24 24 C 1.33771 * 109.47389 * 359.75477 * 23 22 21 25 25 O 1.21521 * 123.06800 * 180.24211 * 24 23 22 26 26 C 1.53117 * 109.16032 * 57.65459 * 19 18 17 27 27 C 1.46851 * 110.99682 * 170.00115 * 16 15 14 28 28 H 1.08999 * 109.46908 * 269.99915 * 1 2 3 29 29 H 1.09000 * 109.47065 * 29.99364 * 1 2 3 30 30 H 1.08990 * 109.47304 * 149.99656 * 1 2 3 31 31 H 1.09004 * 109.46561 * 30.00494 * 3 2 1 32 32 H 1.08998 * 109.47073 * 150.00154 * 3 2 1 33 33 H 0.97003 * 119.99944 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46665 * 60.00498 * 14 12 2 35 35 H 1.08993 * 109.47304 * 300.00054 * 14 12 2 36 36 H 1.09001 * 109.46801 * 300.00442 * 15 14 12 37 37 H 1.09001 * 109.46998 * 60.00038 * 15 14 12 38 38 H 1.09000 * 109.46389 * 305.85096 * 17 16 15 39 39 H 1.08998 * 109.46466 * 65.81826 * 17 16 15 40 40 H 1.09001 * 109.50415 * 180.87699 * 18 17 16 41 41 H 1.09005 * 109.50244 * 60.76180 * 18 17 16 42 42 H 1.09008 * 109.57727 * 297.72064 * 19 18 17 43 43 H 1.09003 * 110.56812 * 298.55097 * 21 20 19 44 44 H 1.08999 * 110.56802 * 61.40240 * 21 20 19 45 45 H 1.08996 * 110.52152 * 118.63166 * 22 21 20 46 46 H 1.08999 * 110.51745 * 241.22841 * 22 21 20 47 47 H 1.09006 * 109.50431 * 182.40729 * 26 19 18 48 48 H 1.08996 * 109.50401 * 62.28603 * 26 19 18 49 49 H 1.08992 * 109.46356 * 294.17825 * 27 16 15 50 50 H 1.09007 * 109.46137 * 54.15905 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1261 2.8780 -1.6726 7 7 3.3457 3.2575 -2.9126 8 14 3.7319 3.9298 -0.2528 9 1 5.1053 3.5090 0.1241 10 1 3.7469 5.3564 -0.6647 11 1 2.8254 3.7601 0.9110 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 7 1.6449 -4.9074 -0.0011 17 6 0.5544 -4.8849 -0.9842 18 6 -0.2760 -6.1640 -0.8561 19 6 0.6258 -7.3782 -1.0943 20 7 -0.1508 -8.6075 -0.9157 21 6 -0.3623 -9.6421 -1.9396 22 6 -1.2360 -10.6917 -1.2258 23 8 -1.4237 -10.1439 0.1112 24 6 -0.7803 -8.9752 0.2087 25 8 -0.7702 -8.3064 1.2233 26 6 1.7803 -7.3517 -0.0889 27 6 2.5512 -6.0382 -0.2392 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 3.8219 4.0838 -3.0898 34 1 0.7584 -2.5298 -0.8904 35 1 0.7590 -2.5302 0.8896 36 1 3.0062 -3.5775 -0.8905 37 1 3.0062 -3.5776 0.8895 38 1 -0.0819 -4.0190 -0.8010 39 1 0.9723 -4.8222 -1.9889 40 1 -1.0761 -6.1541 -1.5964 41 1 -0.7056 -6.2204 0.1441 42 1 1.0249 -7.3435 -2.1081 43 1 -0.8879 -9.2277 -2.7999 44 1 0.5885 -10.0790 -2.2447 45 1 -2.1950 -10.7990 -1.7324 46 1 -0.7199 -11.6507 -1.1796 47 1 2.4495 -8.1904 -0.2809 48 1 1.3831 -7.4267 0.9234 49 1 2.9597 -5.9701 -1.2474 50 1 3.3651 -6.0100 0.4853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852721389.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:10 Heat of formation + Delta-G solvation = -86.878180 kcal Electronic energy + Delta-G solvation = -30022.151356 eV Core-core repulsion = 25857.307344 eV Total energy + Delta-G solvation = -4164.844012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.97545 -39.64754 -38.78380 -37.40320 -36.11457 -34.91857 -33.34108 -32.52020 -31.29447 -30.47526 -29.45837 -28.16832 -25.98341 -25.27417 -24.13205 -23.51345 -23.07017 -21.77380 -20.88484 -19.87541 -18.36425 -17.78115 -17.64577 -17.08129 -16.95882 -16.60624 -15.60523 -15.47454 -15.30413 -15.19694 -14.87276 -14.56769 -14.48656 -14.38086 -14.36615 -13.84962 -13.49040 -13.35690 -13.18894 -12.85311 -12.71709 -12.40241 -12.31830 -12.20424 -11.99831 -11.78844 -11.73314 -11.44607 -11.39703 -11.14694 -11.02079 -10.97911 -10.86949 -10.66415 -10.49933 -10.44075 -10.13430 -9.54484 -9.26580 -8.98371 -8.58941 -8.36534 -7.68919 -6.09029 -4.07631 2.02736 2.43873 3.04910 3.29646 3.35580 3.36827 3.37744 3.60667 3.64801 4.03548 4.10823 4.13164 4.39820 4.50306 4.58590 4.66399 4.72781 4.88200 4.95507 5.00941 5.07923 5.09507 5.16501 5.21617 5.23455 5.28626 5.34287 5.42392 5.56496 5.58361 5.69140 5.74348 5.82558 5.86561 5.96779 5.99502 6.08739 6.16446 6.17841 6.23860 6.70691 6.94389 6.96706 7.01126 7.03626 7.34746 7.61319 7.73675 8.26145 8.46975 8.92357 8.99635 9.51519 11.04324 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029780 B = 0.001925 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.995219 B =14538.382152 C =14573.969560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.073 0.927 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.544 6.544 14 C -0.142 4.142 15 C 0.073 3.927 16 N -0.538 5.538 17 C 0.051 3.949 18 C -0.132 4.132 19 C 0.180 3.820 20 N -0.628 5.628 21 C 0.064 3.936 22 C 0.041 3.959 23 O -0.332 6.332 24 C 0.640 3.360 25 O -0.510 6.510 26 C -0.132 4.132 27 C 0.062 3.938 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.036 0.964 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.338 -28.661 0.549 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.566 4.566 5 H 0.091 0.909 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.294 3.706 13 O -0.421 6.421 14 C -0.182 4.182 15 C -0.054 4.054 16 N -0.263 5.263 17 C -0.077 4.077 18 C -0.171 4.171 19 C 0.079 3.921 20 N -0.376 5.376 21 C -0.060 4.060 22 C -0.034 4.034 23 O -0.242 6.242 24 C 0.394 3.606 25 O -0.394 6.394 26 C -0.171 4.171 27 C -0.066 4.066 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.086 0.914 48 H 0.110 0.890 49 H 0.054 0.946 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.954 -28.317 1.609 30.059 hybrid contribution 0.631 0.692 -0.619 1.122 sum -9.323 -27.625 0.991 29.173 Atomic orbital electron populations 1.21658 0.80923 1.02899 1.00531 1.47841 1.06298 1.07162 1.71787 1.19663 0.92496 0.80142 0.98313 1.21323 1.36925 1.07083 0.91272 0.90865 1.24870 0.95256 0.97386 0.95623 1.69902 1.41565 1.23564 1.18657 0.86829 0.80131 0.79693 0.82913 1.19908 1.21078 1.19047 1.20307 0.88045 0.85122 0.77129 1.90665 1.13996 1.87335 1.50153 1.21814 0.99476 0.92817 1.04127 1.21824 0.94825 0.86153 1.02609 1.62013 1.11759 1.03005 1.49553 1.22178 0.93871 0.98064 0.93636 1.22033 0.97823 0.92815 1.04392 1.21017 0.90659 0.80591 0.99853 1.48272 1.54402 1.22754 1.12205 1.22819 1.01325 0.88911 0.92919 1.24256 1.01719 0.97568 0.79821 1.87299 1.68692 1.34701 1.33547 1.18545 0.77457 0.80245 0.84338 1.91074 1.64263 1.53063 1.30957 1.22029 0.96251 0.97068 1.01718 1.21989 0.94873 0.89627 1.00158 0.93556 0.90638 0.92187 0.95246 0.94545 0.92584 0.89202 0.88619 0.93696 0.89663 0.89339 0.94614 0.91344 0.89039 0.89071 0.89026 0.89101 0.87677 0.87703 0.91405 0.89026 0.94628 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.24 59.85 0.61 1.90 16 2 N -0.60 -12.42 2.86 -182.96 -0.52 -12.94 16 3 C 0.21 5.32 4.23 -5.19 -0.02 5.29 16 4 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16 5 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 8 Si 0.88 21.76 27.47 -169.99 -4.67 17.10 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 12 C 0.51 10.29 7.67 -10.99 -0.08 10.21 16 13 O -0.54 -13.34 15.56 5.56 0.09 -13.25 16 14 C -0.14 -2.05 3.50 -27.88 -0.10 -2.15 16 15 C 0.07 1.03 4.56 -3.82 -0.02 1.01 16 16 N -0.54 -6.34 4.81 -234.67 -1.13 -7.46 16 17 C 0.05 0.52 4.85 -3.84 -0.02 0.50 16 18 C -0.13 -1.23 5.42 -26.65 -0.14 -1.37 16 19 C 0.18 1.45 2.86 -67.82 -0.19 1.25 16 20 N -0.63 -4.82 2.85 -171.09 -0.49 -5.31 16 21 C 0.06 0.21 7.67 -3.15 -0.02 0.18 16 22 C 0.04 0.13 8.23 37.73 0.31 0.44 16 23 O -0.33 -3.05 11.09 -37.83 -0.42 -3.47 16 24 C 0.64 7.06 8.30 53.71 0.45 7.50 16 25 O -0.51 -7.70 14.98 -19.13 -0.29 -7.99 16 26 C -0.13 -1.22 5.42 -26.65 -0.14 -1.36 16 27 C 0.06 0.63 5.42 -3.83 -0.02 0.61 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 30 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 31 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 32 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.09 1.16 5.47 -51.93 -0.28 0.87 16 35 H 0.10 1.23 8.11 -51.93 -0.42 0.81 16 36 H 0.04 0.69 8.04 -51.93 -0.42 0.27 16 37 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 38 H 0.09 0.88 5.81 -51.93 -0.30 0.58 16 39 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.11 6.74 -51.93 -0.35 0.76 16 42 H 0.09 0.57 8.10 -51.92 -0.42 0.15 16 43 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 1.11 6.72 -51.93 -0.35 0.76 16 49 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -38.10 391.47 -8.85 -46.95 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -8.26 Total: -2.89 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 0.16 Total: 10.39 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -1.36 Total: -52.74 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.62 Total: -24.70 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.10 -8.85 -46.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852721389.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.926 kcal (2) G-P(sol) polarization free energy of solvation -38.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds