Wall clock time and date at job start Sat Apr 11 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00463 * 2 1 4 4 C 1.50697 * 109.47527 * 270.00600 * 3 2 1 5 5 H 1.08009 * 119.99486 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00223 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00214 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00039 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.46965 * 90.00106 * 8 6 4 10 10 H 1.48501 * 109.47201 * 210.00158 * 8 6 4 11 11 H 1.48496 * 109.47104 * 330.00331 * 8 6 4 12 12 C 1.34776 * 119.99801 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99940 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00035 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.47184 * 180.02562 * 14 12 2 16 16 N 1.46898 * 109.47006 * 180.02562 * 15 14 12 17 17 C 1.46839 * 111.00175 * 45.79285 * 16 15 14 18 18 C 1.53038 * 109.52321 * 185.83828 * 17 16 15 19 19 C 1.53111 * 109.28032 * 300.82001 * 18 17 16 20 20 N 1.46495 * 109.52586 * 177.55998 * 19 18 17 21 21 C 1.47090 * 125.56260 * 120.31634 * 20 19 18 22 22 C 1.54095 * 103.77949 * 179.97438 * 21 20 19 23 23 O 1.45699 * 104.00727 * 0.02562 * 22 21 20 24 24 C 1.33771 * 109.47389 * 359.75477 * 23 22 21 25 25 O 1.21521 * 123.06800 * 180.24211 * 24 23 22 26 26 C 1.53117 * 109.16032 * 57.65459 * 19 18 17 27 27 C 1.46851 * 110.99682 * 170.00115 * 16 15 14 28 28 H 1.08999 * 109.46908 * 269.99915 * 1 2 3 29 29 H 1.09000 * 109.47065 * 29.99364 * 1 2 3 30 30 H 1.08990 * 109.47304 * 149.99656 * 1 2 3 31 31 H 1.09004 * 109.46561 * 30.00494 * 3 2 1 32 32 H 1.08998 * 109.47073 * 150.00154 * 3 2 1 33 33 H 0.97003 * 119.99944 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46665 * 60.00498 * 14 12 2 35 35 H 1.08993 * 109.47304 * 300.00054 * 14 12 2 36 36 H 1.09001 * 109.46801 * 300.00442 * 15 14 12 37 37 H 1.09001 * 109.46998 * 60.00038 * 15 14 12 38 38 H 1.09000 * 109.46389 * 305.85096 * 17 16 15 39 39 H 1.08998 * 109.46466 * 65.81826 * 17 16 15 40 40 H 1.09001 * 109.50415 * 180.87699 * 18 17 16 41 41 H 1.09005 * 109.50244 * 60.76180 * 18 17 16 42 42 H 1.09008 * 109.57727 * 297.72064 * 19 18 17 43 43 H 1.09003 * 110.56812 * 298.55097 * 21 20 19 44 44 H 1.08999 * 110.56802 * 61.40240 * 21 20 19 45 45 H 1.08996 * 110.52152 * 118.63166 * 22 21 20 46 46 H 1.08999 * 110.51745 * 241.22841 * 22 21 20 47 47 H 1.09006 * 109.50431 * 182.40729 * 26 19 18 48 48 H 1.08996 * 109.50401 * 62.28603 * 26 19 18 49 49 H 1.08992 * 109.46356 * 294.17825 * 27 16 15 50 50 H 1.09007 * 109.46137 * 54.15905 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1261 2.8780 -1.6726 7 7 3.3457 3.2575 -2.9126 8 14 3.7319 3.9298 -0.2528 9 1 5.1053 3.5090 0.1241 10 1 3.7469 5.3564 -0.6647 11 1 2.8254 3.7601 0.9110 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 7 1.6449 -4.9074 -0.0011 17 6 0.5544 -4.8849 -0.9842 18 6 -0.2760 -6.1640 -0.8561 19 6 0.6258 -7.3782 -1.0943 20 7 -0.1508 -8.6075 -0.9157 21 6 -0.3623 -9.6421 -1.9396 22 6 -1.2360 -10.6917 -1.2258 23 8 -1.4237 -10.1439 0.1112 24 6 -0.7803 -8.9752 0.2087 25 8 -0.7702 -8.3064 1.2233 26 6 1.7803 -7.3517 -0.0889 27 6 2.5512 -6.0382 -0.2392 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 3.8219 4.0838 -3.0898 34 1 0.7584 -2.5298 -0.8904 35 1 0.7590 -2.5302 0.8896 36 1 3.0062 -3.5775 -0.8905 37 1 3.0062 -3.5776 0.8895 38 1 -0.0819 -4.0190 -0.8010 39 1 0.9723 -4.8222 -1.9889 40 1 -1.0761 -6.1541 -1.5964 41 1 -0.7056 -6.2204 0.1441 42 1 1.0249 -7.3435 -2.1081 43 1 -0.8879 -9.2277 -2.7999 44 1 0.5885 -10.0790 -2.2447 45 1 -2.1950 -10.7990 -1.7324 46 1 -0.7199 -11.6507 -1.1796 47 1 2.4495 -8.1904 -0.2809 48 1 1.3831 -7.4267 0.9234 49 1 2.9597 -5.9701 -1.2474 50 1 3.3651 -6.0100 0.4853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852721389.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:09 Heat of formation + Delta-G solvation = -115.906101 kcal Electronic energy + Delta-G solvation = -30023.410101 eV Core-core repulsion = 25857.307344 eV Total energy + Delta-G solvation = -4166.102757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.57686 -40.91870 -39.91798 -38.21942 -36.92933 -36.57122 -34.74572 -34.11854 -32.12426 -31.48811 -30.39223 -29.59961 -27.36829 -26.32642 -24.61596 -24.49781 -24.30740 -22.96294 -21.86917 -20.61861 -19.86843 -19.15458 -18.47772 -18.16731 -18.06413 -17.52208 -17.11387 -16.85061 -16.29726 -16.08909 -15.98478 -15.90614 -15.29021 -15.09099 -15.03057 -14.94805 -14.69927 -14.48078 -14.19341 -13.93699 -13.82082 -13.65238 -13.64622 -13.27518 -13.14553 -13.11513 -12.83180 -12.72099 -12.59271 -12.38269 -12.22144 -12.13497 -12.02217 -11.78200 -11.75353 -11.61320 -11.45228 -11.22474 -10.83975 -10.65840 -9.83633 -9.40061 -9.28512 -8.34976 -6.39773 1.32303 1.36165 1.44728 1.46081 1.68717 1.79636 2.26924 2.30378 2.64748 2.91807 2.99494 3.40088 3.54156 3.70470 3.80566 3.90313 3.96550 4.05105 4.07461 4.23608 4.26833 4.36060 4.38224 4.38754 4.50941 4.57466 4.58484 4.66859 4.68226 4.75532 4.77433 4.81565 4.86017 4.88129 4.91767 4.97494 4.98568 5.01853 5.10710 5.20873 5.31210 5.45022 5.54934 5.61372 6.01592 6.13647 6.22931 6.42339 6.60919 6.69536 7.01287 7.20706 7.41406 8.81764 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029780 B = 0.001925 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.995219 B =14538.382152 C =14573.969560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.221 3.779 4 C -0.534 4.534 5 H 0.029 0.971 6 C 0.010 3.990 7 N -0.944 5.944 8 Si 0.948 3.052 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.239 1.239 12 C 0.497 3.503 13 O -0.597 6.597 14 C -0.124 4.124 15 C 0.083 3.917 16 N -0.545 5.545 17 C 0.049 3.951 18 C -0.124 4.124 19 C 0.179 3.821 20 N -0.622 5.622 21 C 0.061 3.939 22 C 0.035 3.965 23 O -0.355 6.355 24 C 0.634 3.366 25 O -0.566 6.566 26 C -0.123 4.123 27 C 0.061 3.939 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.018 0.982 33 H 0.268 0.732 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.026 0.974 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.084 0.916 48 H 0.058 0.942 49 H 0.047 0.953 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.708 -30.112 0.191 32.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.340 5.340 3 C 0.099 3.901 4 C -0.573 4.573 5 H 0.048 0.952 6 C -0.188 4.188 7 N -0.584 5.584 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.162 1.162 12 C 0.286 3.714 13 O -0.478 6.478 14 C -0.164 4.164 15 C -0.045 4.045 16 N -0.270 5.270 17 C -0.079 4.079 18 C -0.163 4.163 19 C 0.078 3.922 20 N -0.369 5.369 21 C -0.060 4.060 22 C -0.039 4.039 23 O -0.266 6.266 24 C 0.388 3.612 25 O -0.454 6.454 26 C -0.162 4.162 27 C -0.067 4.067 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.140 0.860 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.102 0.898 48 H 0.077 0.923 49 H 0.065 0.935 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.389 -29.825 1.214 31.949 hybrid contribution 1.012 1.002 -0.632 1.558 sum -10.377 -28.823 0.582 30.640 Atomic orbital electron populations 1.21975 0.77525 1.04063 1.02948 1.47983 1.08517 1.05981 1.71489 1.19345 0.92740 0.82659 0.95370 1.21543 1.36733 1.06676 0.92347 0.95233 1.25858 0.95351 0.98998 0.98638 1.70048 1.42743 1.24475 1.21181 0.85710 0.79523 0.77797 0.79889 1.20270 1.19916 1.16217 1.21325 0.87799 0.86675 0.75603 1.90632 1.16558 1.88215 1.52435 1.21758 0.99108 0.89293 1.06235 1.21615 0.94571 0.87350 1.00998 1.62013 1.12132 1.02211 1.50684 1.22255 0.93339 0.98767 0.93572 1.21931 0.98234 0.93063 1.03080 1.21051 0.89929 0.80430 1.00775 1.48294 1.53104 1.23204 1.12319 1.23191 1.02918 0.87702 0.92203 1.24742 1.03525 0.98271 0.77321 1.87252 1.68399 1.34043 1.36886 1.18776 0.77544 0.80392 0.84450 1.91021 1.66299 1.54908 1.33191 1.21916 0.96898 0.97014 1.00386 1.22029 0.94680 0.89456 1.00566 0.90372 0.91539 0.89093 0.93236 0.96437 0.92267 0.86929 0.86183 0.95545 0.91322 0.89026 0.93662 0.89603 0.92167 0.86027 0.86640 0.86710 0.85376 0.85383 0.89755 0.92320 0.93483 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.17 10.24 127.77 1.31 3.48 16 2 N -0.61 -24.81 2.86 -851.15 -2.43 -27.25 16 3 C 0.22 10.94 4.23 85.63 0.36 11.30 16 4 C -0.53 -31.68 9.94 25.60 0.25 -31.42 16 5 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 6 C 0.01 0.57 5.47 84.65 0.46 1.03 16 7 N -0.94 -59.87 13.96 21.44 0.30 -59.57 16 8 Si 0.95 44.92 27.47 68.60 1.88 46.80 16 9 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 12 C 0.50 20.12 7.67 87.66 0.67 20.80 16 13 O -0.60 -30.17 15.56 -3.04 -0.05 -30.22 16 14 C -0.12 -3.42 3.50 29.85 0.10 -3.31 16 15 C 0.08 2.31 4.56 86.31 0.39 2.70 16 16 N -0.55 -12.43 4.81 -896.35 -4.31 -16.74 16 17 C 0.05 0.89 4.85 86.33 0.42 1.31 16 18 C -0.12 -2.12 5.42 30.64 0.17 -1.95 16 19 C 0.18 2.50 2.86 45.07 0.13 2.63 16 20 N -0.62 -8.26 2.85 -926.91 -2.64 -10.90 16 21 C 0.06 0.17 7.67 86.64 0.66 0.83 16 22 C 0.03 0.12 8.23 72.35 0.60 0.72 16 23 O -0.36 -6.21 11.09 -47.31 -0.52 -6.74 16 24 C 0.63 13.81 8.30 129.91 1.08 14.88 16 25 O -0.57 -17.92 14.98 19.62 0.29 -17.63 16 26 C -0.12 -2.17 5.42 30.65 0.17 -2.01 16 27 C 0.06 1.19 5.42 86.33 0.47 1.66 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 30 H 0.09 1.99 6.44 -2.39 -0.02 1.97 16 31 H 0.05 2.24 7.13 -2.39 -0.02 2.23 16 32 H 0.02 0.93 6.85 -2.39 -0.02 0.92 16 33 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 34 H 0.11 2.61 5.47 -2.39 -0.01 2.60 16 35 H 0.12 2.77 8.11 -2.39 -0.02 2.75 16 36 H 0.03 0.82 8.04 -2.39 -0.02 0.80 16 37 H 0.07 2.12 8.10 -2.39 -0.02 2.11 16 38 H 0.09 1.60 5.81 -2.39 -0.01 1.59 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.46 6.74 -2.38 -0.02 1.44 16 42 H 0.12 1.02 8.10 -2.38 -0.02 1.00 16 43 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 46 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 47 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 48 H 0.06 1.47 6.72 -2.39 -0.02 1.45 16 49 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.08 1.55 8.12 -2.38 -0.02 1.53 16 Total: -1.00 -89.84 391.47 0.64 -89.20 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.87 Total: 10.40 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 7.25 Total: 22.65 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -9.08 Total: -114.46 kcal Atomic # 8 Polarization: -54.31 SS G_CDS: -0.28 Total: -54.58 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -89.84 0.64 -89.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852721389.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.706 kcal (2) G-P(sol) polarization free energy of solvation -89.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds