Wall clock time and date at job start Sat Apr 11 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00152 * 2 1 4 4 H 1.09007 * 109.57486 * 329.84520 * 3 2 1 5 5 C 1.53099 * 109.52349 * 89.99876 * 3 2 1 6 6 O 1.42900 * 109.41234 * 177.51335 * 5 3 2 7 7 C 1.42905 * 114.10117 * 298.84249 * 6 5 3 8 8 C 1.53088 * 109.41220 * 61.15880 * 7 6 5 9 9 C 1.53172 * 109.52237 * 209.68649 * 3 2 1 10 10 H 1.08998 * 109.54737 * 302.97849 * 9 3 2 11 11 N 1.46901 * 109.61704 * 63.20248 * 9 3 2 12 12 C 1.46908 * 110.99693 * 192.33830 * 11 9 3 13 13 C 1.46897 * 111.00058 * 68.38749 * 11 9 3 14 14 C 1.50692 * 109.47390 * 189.99943 * 13 11 9 15 15 O 1.21283 * 120.00032 * 359.97438 * 14 13 11 16 16 N 1.34779 * 120.00583 * 180.02562 * 14 13 11 17 17 C 1.46498 * 120.00249 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47109 * 89.99868 * 17 16 14 19 19 H 1.08000 * 120.00099 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00074 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99966 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00107 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46980 * 89.99880 * 22 20 18 24 24 H 1.48503 * 109.46971 * 209.99643 * 22 20 18 25 25 H 1.48498 * 109.46928 * 329.99926 * 22 20 18 26 26 C 1.46499 * 119.99372 * 359.97438 * 16 14 13 27 27 C 1.53001 * 109.47040 * 90.00747 * 26 16 14 28 28 C 1.47201 * 109.47198 * 179.97438 * 27 26 16 29 29 N 8.26728 * 91.68841 * 327.88071 * 2 1 3 30 30 H 1.08997 * 109.47523 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47388 * 300.00093 * 1 2 3 32 32 H 1.09002 * 109.47146 * 59.99706 * 1 2 3 33 33 H 1.08997 * 109.47795 * 57.53351 * 5 3 2 34 34 H 1.08994 * 109.48079 * 297.49905 * 5 3 2 35 35 H 1.09000 * 109.47989 * 181.14468 * 7 6 5 36 36 H 1.09002 * 109.47484 * 301.16425 * 7 6 5 37 37 H 1.08998 * 109.51946 * 62.30146 * 8 7 6 38 38 H 1.09002 * 109.52184 * 182.48332 * 8 7 6 39 39 H 1.08998 * 109.46800 * 53.66374 * 12 11 9 40 40 H 1.09006 * 109.46533 * 173.65757 * 12 11 9 41 41 H 1.08996 * 109.47118 * 293.65999 * 12 11 9 42 42 H 1.08996 * 109.47088 * 310.00014 * 13 11 9 43 43 H 1.09002 * 109.47199 * 69.99987 * 13 11 9 44 44 H 1.08997 * 109.46794 * 209.99905 * 17 16 14 45 45 H 1.09000 * 109.46846 * 329.99832 * 17 16 14 46 46 H 0.96997 * 120.00438 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.46898 * 210.00057 * 26 16 14 48 48 H 1.08996 * 109.47794 * 330.00288 * 26 16 14 49 49 H 1.08997 * 109.46711 * 299.99424 * 27 26 16 50 50 H 1.08996 * 109.47202 * 59.99178 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3475 2.0003 -0.5159 5 6 2.2183 1.7728 1.4430 6 8 2.8525 3.0534 1.4406 7 6 4.1431 3.0643 0.8270 8 6 4.0123 2.6488 -0.6406 9 6 3.3642 1.2628 -0.7150 10 1 4.0103 0.5317 -0.2292 11 7 3.1676 0.8872 -2.1215 12 6 4.4473 0.5524 -2.7607 13 6 2.4735 1.9514 -2.8586 14 6 2.0721 1.4412 -4.2185 15 8 2.3385 0.3031 -4.5421 16 7 1.4180 2.2498 -5.0757 17 6 1.0274 1.7535 -6.3976 18 6 -0.3482 1.1431 -6.3186 19 1 -0.8783 1.1261 -5.3778 20 6 -0.9296 0.6054 -7.4472 21 7 -0.2840 0.6256 -8.5928 22 14 -2.6345 -0.1519 -7.3491 23 1 -3.6558 0.8910 -7.6222 24 1 -2.7529 -1.2366 -8.3565 25 1 -2.8498 -0.7121 -5.9908 26 6 1.0967 3.6247 -4.6851 27 6 2.2454 4.5513 -5.0887 28 6 1.9223 5.9328 -4.6968 29 7 1.6726 6.9989 -4.3937 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.8483 1.0562 1.9699 34 1 1.2532 1.8460 1.9441 35 1 4.5645 4.0679 0.8846 36 1 4.7982 2.3647 1.3462 37 1 3.3901 3.3707 -1.1694 38 1 5.0007 2.6138 -1.0987 39 1 4.9598 -0.2080 -2.1714 40 1 4.2628 0.1706 -3.7649 41 1 5.0685 1.4460 -2.8201 42 1 1.5835 2.2545 -2.3070 43 1 3.1387 2.8073 -2.9734 44 1 1.0178 2.5803 -7.1077 45 1 1.7413 0.9990 -6.7279 46 1 -0.6931 0.2476 -9.3869 47 1 0.1819 3.9405 -5.1866 48 1 0.9541 3.6719 -3.6055 49 1 3.1602 4.2354 -4.5872 50 1 2.3881 4.5041 -6.1683 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880424698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:25 Heat of formation + Delta-G solvation = -77.808085 kcal Electronic energy + Delta-G solvation = -31553.558781 eV Core-core repulsion = 27389.108078 eV Total energy + Delta-G solvation = -4164.450703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.53774 -39.20380 -37.35502 -37.05728 -36.57788 -35.17371 -32.90750 -31.77125 -30.85381 -30.60989 -28.92550 -26.82825 -26.62426 -25.80388 -24.03817 -23.45682 -23.13004 -22.18256 -20.18149 -18.41658 -17.66246 -17.24996 -16.89235 -16.72088 -16.45785 -15.92533 -15.76800 -15.45587 -15.15796 -14.92080 -14.71622 -14.56964 -14.15550 -14.04340 -13.97580 -13.69494 -13.51308 -13.16257 -13.06421 -12.83725 -12.46296 -12.35013 -12.20197 -12.13049 -11.83966 -11.76675 -11.60621 -11.45223 -11.35877 -11.26642 -11.17290 -10.98953 -10.86715 -10.62217 -10.50299 -10.27653 -10.18016 -9.69270 -9.37746 -8.97551 -8.47009 -8.14918 -7.81498 -6.08577 -4.12852 2.69516 2.77630 3.27881 3.29324 3.32908 3.36185 3.40667 3.48826 3.80407 3.88133 4.21719 4.41688 4.46683 4.52522 4.68467 4.80852 4.83708 4.89958 4.95221 5.05668 5.11673 5.19770 5.22946 5.26587 5.27373 5.29278 5.38526 5.43117 5.44068 5.46150 5.53382 5.61523 5.67664 5.72687 5.76393 5.79364 5.85513 6.03415 6.28529 6.74010 6.82656 7.04910 7.07947 7.20481 7.36124 7.44091 7.54004 7.87809 8.17729 8.26866 8.85822 9.02113 9.52775 10.99564 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.003866 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.274086 B = 7241.278707 C = 8577.347438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.065 3.935 4 H 0.069 0.931 5 C 0.041 3.959 6 O -0.377 6.377 7 C 0.063 3.937 8 C -0.192 4.192 9 C 0.087 3.913 10 H 0.093 0.907 11 N -0.504 5.504 12 C 0.020 3.980 13 C 0.029 3.971 14 C 0.509 3.491 15 O -0.511 6.511 16 N -0.600 5.600 17 C 0.247 3.753 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.118 3.882 27 C -0.050 4.050 28 C 0.216 3.784 29 N -0.444 5.444 30 H 0.087 0.913 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.018 0.982 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.034 0.966 45 H 0.046 0.954 46 H 0.263 0.737 47 H 0.095 0.905 48 H 0.071 0.929 49 H 0.103 0.897 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.939 4.736 17.223 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.006 3.994 4 H 0.087 0.913 5 C -0.037 4.037 6 O -0.296 6.296 7 C -0.014 4.014 8 C -0.231 4.231 9 C -0.022 4.022 10 H 0.111 0.889 11 N -0.225 5.225 12 C -0.128 4.128 13 C -0.102 4.102 14 C 0.295 3.705 15 O -0.386 6.386 16 N -0.332 5.332 17 C 0.128 3.872 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.139 4.139 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.009 4.009 27 C -0.092 4.092 28 C -0.102 4.102 29 N -0.121 5.121 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.037 0.963 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.113 0.887 48 H 0.090 0.910 49 H 0.121 0.879 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.420 5.176 17.324 19.946 hybrid contribution -0.538 -0.027 -0.309 0.621 sum 7.882 5.149 17.015 19.446 Atomic orbital electron populations 1.22812 0.80986 1.03034 0.99736 1.87978 1.19536 1.25613 1.94735 1.22776 0.95181 0.86243 0.95219 0.91301 1.23102 0.98722 0.85425 0.96440 1.87961 1.32020 1.30217 1.79389 1.22565 0.84954 1.02320 0.91603 1.22999 1.02723 0.98754 0.98643 1.21907 0.95271 0.95094 0.89950 0.88873 1.61745 1.22155 1.38755 0.99892 1.22585 0.88604 0.99166 1.02416 1.22218 0.99740 0.93470 0.94772 1.20132 0.78879 0.86072 0.85439 1.90662 1.53683 1.17731 1.76476 1.48226 1.56342 1.10201 1.18477 1.19323 0.96036 0.95318 0.76526 1.21407 1.01114 1.38745 0.95286 0.92433 1.24903 0.98011 0.95756 0.95248 1.69913 1.37846 1.45758 0.99792 0.86532 0.84138 0.78990 0.77986 1.20699 1.21109 1.19866 1.21279 0.96739 0.82384 1.00457 1.19905 1.01515 0.82870 1.04895 1.29109 0.93244 0.94829 0.93041 1.81215 1.08774 1.12567 1.09551 0.89446 0.94601 0.93570 0.92137 0.88608 0.88581 0.92826 0.90282 0.89894 0.91719 0.88622 0.96332 0.88856 0.92410 0.94830 0.93587 0.92699 0.88696 0.91020 0.87851 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 101.05 1.09 1.44 16 2 O -0.36 -4.74 10.28 -35.23 -0.36 -5.11 16 3 C 0.06 0.73 2.17 -26.59 -0.06 0.67 16 4 H 0.07 0.80 6.01 -51.92 -0.31 0.49 16 5 C 0.04 0.39 6.46 37.21 0.24 0.63 16 6 O -0.38 -3.84 10.77 -35.23 -0.38 -4.22 16 7 C 0.06 0.50 6.84 37.20 0.25 0.75 16 8 C -0.19 -1.64 4.68 -26.59 -0.12 -1.76 16 9 C 0.09 0.95 1.94 -67.53 -0.13 0.81 16 10 H 0.09 1.01 7.93 -51.93 -0.41 0.59 16 11 N -0.50 -6.87 4.36 -236.11 -1.03 -7.90 16 12 C 0.02 0.25 8.91 60.07 0.54 0.79 16 13 C 0.03 0.39 2.86 -4.98 -0.01 0.37 16 14 C 0.51 9.27 7.41 -10.99 -0.08 9.18 16 15 O -0.51 -11.67 13.88 5.55 0.08 -11.59 16 16 N -0.60 -10.76 2.46 -175.07 -0.43 -11.19 16 17 C 0.25 5.76 5.16 -5.19 -0.03 5.73 16 18 C -0.53 -13.97 9.39 -34.44 -0.32 -14.29 16 19 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 22 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 26 C 0.12 1.55 5.17 -4.04 -0.02 1.53 16 27 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 28 C 0.22 2.56 15.43 -20.76 -0.32 2.24 16 29 N -0.44 -6.43 18.54 42.16 0.78 -5.65 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.32 7.94 -51.93 -0.41 -0.10 16 32 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.82 7.93 -51.93 -0.41 0.41 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.70 6.37 -51.93 -0.33 0.37 16 38 H 0.08 0.63 7.08 -51.93 -0.37 0.26 16 39 H 0.06 0.75 7.98 -51.93 -0.41 0.34 16 40 H 0.10 1.53 5.93 -51.93 -0.31 1.22 16 41 H 0.02 0.20 7.05 -51.93 -0.37 -0.17 16 42 H 0.09 1.19 5.43 -51.93 -0.28 0.91 16 43 H 0.06 0.62 5.79 -51.93 -0.30 0.32 16 44 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.05 1.23 7.42 -51.93 -0.39 0.85 16 46 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 48 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 49 H 0.10 0.85 7.22 -51.93 -0.37 0.48 16 50 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 400.75 15.07 6.04 6.04 Total: -1.00 -33.54 400.75 -6.77 -40.31 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.93 Total: -1.25 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 0.75 Total: 9.02 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.06 Total: -49.40 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.66 Total: -20.92 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.54 -6.77 -40.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880424698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.497 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds