Wall clock time and date at job start Sat Apr 11 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99844 * 2 1 4 4 H 1.08996 * 109.52497 * 29.86630 * 3 2 1 5 5 C 1.53099 * 109.56855 * 269.70924 * 3 2 1 6 6 O 1.42902 * 109.41519 * 297.67242 * 5 3 2 7 7 C 1.42903 * 114.10078 * 298.84586 * 6 5 3 8 8 C 1.53093 * 109.41766 * 61.15259 * 7 6 5 9 9 C 1.53176 * 109.52430 * 149.99682 * 3 2 1 10 10 H 1.08997 * 109.54371 * 182.93598 * 9 3 2 11 11 N 1.46899 * 109.54117 * 303.11490 * 9 3 2 12 12 C 1.46900 * 111.00141 * 303.95499 * 11 9 3 13 13 C 1.46904 * 111.00061 * 179.97438 * 11 9 3 14 14 C 1.50700 * 109.47192 * 189.99979 * 13 11 9 15 15 O 1.21283 * 119.99803 * 0.02562 * 14 13 11 16 16 N 1.34777 * 119.99675 * 180.28082 * 14 13 11 17 17 C 1.46497 * 119.99525 * 179.72583 * 16 14 13 18 18 C 1.50709 * 109.47273 * 89.99834 * 17 16 14 19 19 H 1.07999 * 119.99476 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00210 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99914 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00074 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46996 * 90.00193 * 22 20 18 24 24 H 1.48502 * 109.46931 * 210.00078 * 22 20 18 25 25 H 1.48498 * 109.47167 * 330.00145 * 22 20 18 26 26 C 1.46496 * 120.00345 * 359.72090 * 16 14 13 27 27 C 1.53005 * 109.46942 * 90.00092 * 26 16 14 28 28 C 1.47196 * 109.47093 * 179.97438 * 27 26 16 29 29 N 9.29209 * 145.54348 * 59.04281 * 2 1 3 30 30 H 1.09006 * 109.46900 * 60.01344 * 1 2 3 31 31 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47377 * 300.00887 * 1 2 3 33 33 H 1.08998 * 109.48126 * 57.65738 * 5 3 2 34 34 H 1.08997 * 109.48121 * 177.68134 * 5 3 2 35 35 H 1.08997 * 109.48342 * 181.14701 * 7 6 5 36 36 H 1.09007 * 109.47580 * 301.17421 * 7 6 5 37 37 H 1.09001 * 109.52320 * 182.48605 * 8 7 6 38 38 H 1.09001 * 109.51542 * 62.30232 * 8 7 6 39 39 H 1.08998 * 109.46551 * 296.04598 * 12 11 9 40 40 H 1.09003 * 109.47182 * 56.04541 * 12 11 9 41 41 H 1.08997 * 109.47165 * 176.04349 * 12 11 9 42 42 H 1.09009 * 109.46542 * 70.00009 * 13 11 9 43 43 H 1.08998 * 109.47050 * 310.00544 * 13 11 9 44 44 H 1.09000 * 109.46889 * 209.99487 * 17 16 14 45 45 H 1.09001 * 109.47460 * 330.00097 * 17 16 14 46 46 H 0.97000 * 120.00447 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.47364 * 210.00706 * 26 16 14 48 48 H 1.09002 * 109.47090 * 330.00257 * 26 16 14 49 49 H 1.08998 * 109.46999 * 300.00039 * 27 26 16 50 50 H 1.08997 * 109.46656 * 60.00331 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3445 2.0005 0.5116 5 6 2.2254 1.7709 -1.4425 6 8 3.1437 0.8907 -2.0937 7 6 4.4384 0.8476 -1.4903 8 6 4.3121 0.3452 -0.0497 9 6 3.3606 1.2646 0.7219 10 1 3.7800 2.2696 0.7679 11 7 3.1741 0.7471 2.0840 12 6 2.1856 1.5465 2.8202 13 6 4.4521 0.6938 2.8065 14 6 4.2685 -0.0626 4.0969 15 8 3.1802 -0.5133 4.3860 16 7 5.3124 -0.2337 4.9321 17 6 5.1324 -0.9639 6.1893 18 6 5.3986 -2.4297 5.9616 19 1 5.6738 -2.7821 4.9785 20 6 5.2907 -3.3207 7.0081 21 7 4.9551 -2.8916 8.2052 22 14 5.6199 -5.1376 6.7256 23 1 7.0588 -5.4219 6.9580 24 1 4.7984 -5.9415 7.6659 25 1 5.2642 -5.4938 5.3286 26 6 6.6269 0.3102 4.5826 27 6 6.7517 1.7336 5.1298 28 6 8.0728 2.2800 4.7792 29 7 9.0909 2.7043 4.5084 30 1 -0.3633 0.5137 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8898 33 1 1.2736 1.7609 -1.9736 34 1 2.6304 2.7828 -1.4414 35 1 5.0808 0.1727 -2.0559 36 1 4.8725 1.8475 -1.4898 37 1 5.2927 0.3535 0.4262 38 1 3.9158 -0.6703 -0.0517 39 1 2.5596 2.5628 2.9436 40 1 1.2490 1.5690 2.2631 41 1 2.0148 1.1006 3.8000 42 1 4.7889 1.7074 3.0242 43 1 5.1963 0.1879 2.1915 44 1 5.8283 -0.5799 6.9352 45 1 4.1102 -0.8310 6.5436 46 1 4.8788 -3.5184 8.9415 47 1 7.4063 -0.3157 5.0169 48 1 6.7366 0.3269 3.4982 49 1 5.9723 2.3595 4.6954 50 1 6.6420 1.7168 6.2141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880424700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:30 Heat of formation + Delta-G solvation = -74.227967 kcal Electronic energy + Delta-G solvation = -31152.981464 eV Core-core repulsion = 26988.686006 eV Total energy + Delta-G solvation = -4164.295457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.39755 -39.24560 -37.15990 -36.96189 -36.44893 -35.14950 -32.89202 -31.93777 -30.84459 -30.78929 -28.77915 -26.88202 -26.62376 -25.73866 -24.03625 -23.54343 -22.99258 -21.91607 -20.02352 -18.52800 -17.69789 -17.25174 -16.73272 -16.45537 -16.35273 -16.02439 -15.81948 -15.58025 -15.14063 -14.96676 -14.71064 -14.37310 -14.24935 -14.12431 -13.98027 -13.59777 -13.42800 -13.17477 -12.77239 -12.70679 -12.54786 -12.44646 -12.34967 -12.08181 -11.83213 -11.74430 -11.61821 -11.46261 -11.26948 -11.16394 -10.99448 -10.86710 -10.76724 -10.60582 -10.43736 -10.20065 -10.16072 -9.66979 -9.26998 -8.95196 -8.45155 -8.17564 -7.79978 -6.06816 -4.10970 2.69679 2.77453 3.30121 3.31760 3.38142 3.42234 3.45269 3.50931 3.78655 3.93713 4.26574 4.38485 4.45004 4.61158 4.65762 4.92220 4.94030 4.96674 5.01857 5.10377 5.13855 5.17940 5.20514 5.24020 5.25241 5.29539 5.37202 5.38706 5.44345 5.48675 5.58693 5.60493 5.64162 5.71202 5.79554 5.81216 6.05227 6.20832 6.27990 6.82017 6.90360 7.06387 7.09262 7.25388 7.37505 7.46001 7.53783 7.89867 8.19591 8.28883 8.88037 9.04276 9.54770 11.01300 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009546 B = 0.003500 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.498649 B = 7999.121967 C = 9616.120101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.347 6.347 3 C 0.062 3.938 4 H 0.069 0.931 5 C 0.042 3.958 6 O -0.371 6.371 7 C 0.063 3.937 8 C -0.150 4.150 9 C 0.088 3.912 10 H 0.049 0.951 11 N -0.504 5.504 12 C 0.018 3.982 13 C 0.030 3.970 14 C 0.510 3.490 15 O -0.512 6.512 16 N -0.600 5.600 17 C 0.247 3.753 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.118 3.882 27 C -0.050 4.050 28 C 0.217 3.783 29 N -0.445 5.445 30 H 0.033 0.967 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.015 0.985 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.034 0.966 45 H 0.046 0.954 46 H 0.263 0.737 47 H 0.094 0.906 48 H 0.073 0.927 49 H 0.104 0.896 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.133 13.363 -16.021 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.002 3.998 4 H 0.087 0.913 5 C -0.036 4.036 6 O -0.289 6.289 7 C -0.014 4.014 8 C -0.187 4.187 9 C -0.020 4.020 10 H 0.067 0.933 11 N -0.228 5.228 12 C -0.129 4.129 13 C -0.101 4.101 14 C 0.295 3.705 15 O -0.386 6.386 16 N -0.333 5.333 17 C 0.128 3.872 18 C -0.565 4.565 19 H 0.077 0.923 20 C -0.139 4.139 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.008 4.008 27 C -0.092 4.092 28 C -0.101 4.101 29 N -0.123 5.123 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.034 0.966 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.113 0.887 48 H 0.091 0.909 49 H 0.122 0.878 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.382 12.909 -16.246 21.024 hybrid contribution 0.041 0.071 0.451 0.459 sum -3.342 12.980 -15.795 20.715 Atomic orbital electron populations 1.22779 0.81795 1.02922 0.99084 1.88107 1.18652 1.25120 1.94620 1.22810 0.94908 0.86920 0.95122 0.91273 1.23092 0.94384 0.92838 0.93304 1.87961 1.22143 1.65418 1.53396 1.22608 0.84920 1.00396 0.93494 1.22275 0.99334 1.02157 0.94978 1.21749 0.94497 0.96432 0.89369 0.93324 1.61545 1.08026 1.52927 1.00321 1.22611 0.95056 0.94041 1.01229 1.22211 0.92959 0.99475 0.95470 1.20123 0.84799 0.80966 0.84568 1.90662 1.25008 1.48571 1.74366 1.48221 1.07250 1.54590 1.23202 1.19319 0.98646 0.90625 0.78604 1.21427 1.47122 0.92285 0.95709 0.92346 1.24903 0.95023 0.99005 0.95010 1.69917 1.47873 1.35095 1.00512 0.86527 0.77989 0.84862 0.78259 1.20703 1.21142 1.19804 1.21279 0.88284 0.91266 1.00000 1.19913 0.86282 0.97999 1.05013 1.29106 0.94785 0.93235 0.92996 1.81200 1.12032 1.09529 1.09502 0.94810 0.89546 0.94198 0.88700 0.92549 0.88483 0.93534 0.90788 0.88716 0.96622 0.91991 0.88552 0.92825 0.88083 0.94852 0.93629 0.92727 0.88718 0.90884 0.87836 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.40 16 2 O -0.35 -4.53 9.58 -42.61 -0.41 -4.94 16 3 C 0.06 0.64 1.84 -26.59 -0.05 0.59 16 4 H 0.07 0.63 6.11 -51.93 -0.32 0.31 16 5 C 0.04 0.38 6.49 37.21 0.24 0.62 16 6 O -0.37 -4.17 10.70 -42.61 -0.46 -4.62 16 7 C 0.06 0.58 6.84 37.21 0.25 0.84 16 8 C -0.15 -1.60 4.97 -26.59 -0.13 -1.73 16 9 C 0.09 0.96 1.81 -67.53 -0.12 0.84 16 10 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 11 N -0.50 -6.91 4.18 -236.10 -0.99 -7.89 16 12 C 0.02 0.24 8.84 60.06 0.53 0.77 16 13 C 0.03 0.39 3.82 -4.97 -0.02 0.37 16 14 C 0.51 9.28 7.40 -10.98 -0.08 9.20 16 15 O -0.51 -11.72 13.89 5.55 0.08 -11.65 16 16 N -0.60 -10.76 2.46 -175.06 -0.43 -11.19 16 17 C 0.25 5.78 5.16 -5.19 -0.03 5.76 16 18 C -0.53 -14.07 9.39 -34.44 -0.32 -14.39 16 19 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.12 1.53 5.16 -4.04 -0.02 1.51 16 27 C -0.05 -0.51 6.02 -29.52 -0.18 -0.69 16 28 C 0.22 2.53 15.43 -20.77 -0.32 2.21 16 29 N -0.45 -6.37 18.54 42.14 0.78 -5.59 16 30 H 0.03 0.27 7.86 -51.93 -0.41 -0.14 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.38 7.96 -51.93 -0.41 -0.04 16 33 H 0.09 0.75 7.86 -51.93 -0.41 0.34 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.70 6.39 -51.93 -0.33 0.37 16 38 H 0.09 1.29 7.83 -51.93 -0.41 0.88 16 39 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.06 0.73 5.96 -51.93 -0.31 0.42 16 41 H 0.10 1.55 5.88 -51.93 -0.31 1.25 16 42 H 0.05 0.56 7.14 -51.92 -0.37 0.19 16 43 H 0.10 1.22 5.18 -51.93 -0.27 0.95 16 44 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 46 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 48 H 0.07 0.78 6.45 -51.93 -0.33 0.45 16 49 H 0.10 0.84 7.20 -51.93 -0.37 0.47 16 50 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 401.45 15.07 6.05 6.05 Total: -1.00 -34.40 401.45 -6.88 -41.29 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.98 Total: -1.95 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 0.75 Total: 8.92 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.10 Total: -49.48 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.79 Total: -21.21 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.40 -6.88 -41.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880424700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.941 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds