Wall clock time and date at job start Sat Apr 11 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99844 * 2 1 4 4 H 1.08996 * 109.52497 * 29.86630 * 3 2 1 5 5 C 1.53099 * 109.56855 * 269.70924 * 3 2 1 6 6 O 1.42902 * 109.41519 * 297.67242 * 5 3 2 7 7 C 1.42903 * 114.10078 * 298.84586 * 6 5 3 8 8 C 1.53093 * 109.41766 * 61.15259 * 7 6 5 9 9 C 1.53176 * 109.52430 * 149.99682 * 3 2 1 10 10 H 1.08997 * 109.54371 * 182.93598 * 9 3 2 11 11 N 1.46899 * 109.54117 * 303.11490 * 9 3 2 12 12 C 1.46900 * 111.00141 * 303.95499 * 11 9 3 13 13 C 1.46904 * 111.00061 * 179.97438 * 11 9 3 14 14 C 1.50700 * 109.47192 * 189.99979 * 13 11 9 15 15 O 1.21283 * 119.99803 * 0.02562 * 14 13 11 16 16 N 1.34777 * 119.99675 * 180.28082 * 14 13 11 17 17 C 1.46497 * 119.99525 * 179.72583 * 16 14 13 18 18 C 1.50709 * 109.47273 * 89.99834 * 17 16 14 19 19 H 1.07999 * 119.99476 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00210 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99914 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00074 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46996 * 90.00193 * 22 20 18 24 24 H 1.48502 * 109.46931 * 210.00078 * 22 20 18 25 25 H 1.48498 * 109.47167 * 330.00145 * 22 20 18 26 26 C 1.46496 * 120.00345 * 359.72090 * 16 14 13 27 27 C 1.53005 * 109.46942 * 90.00092 * 26 16 14 28 28 C 1.47196 * 109.47093 * 179.97438 * 27 26 16 29 29 N 9.29209 * 145.54348 * 59.04281 * 2 1 3 30 30 H 1.09006 * 109.46900 * 60.01344 * 1 2 3 31 31 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47377 * 300.00887 * 1 2 3 33 33 H 1.08998 * 109.48126 * 57.65738 * 5 3 2 34 34 H 1.08997 * 109.48121 * 177.68134 * 5 3 2 35 35 H 1.08997 * 109.48342 * 181.14701 * 7 6 5 36 36 H 1.09007 * 109.47580 * 301.17421 * 7 6 5 37 37 H 1.09001 * 109.52320 * 182.48605 * 8 7 6 38 38 H 1.09001 * 109.51542 * 62.30232 * 8 7 6 39 39 H 1.08998 * 109.46551 * 296.04598 * 12 11 9 40 40 H 1.09003 * 109.47182 * 56.04541 * 12 11 9 41 41 H 1.08997 * 109.47165 * 176.04349 * 12 11 9 42 42 H 1.09009 * 109.46542 * 70.00009 * 13 11 9 43 43 H 1.08998 * 109.47050 * 310.00544 * 13 11 9 44 44 H 1.09000 * 109.46889 * 209.99487 * 17 16 14 45 45 H 1.09001 * 109.47460 * 330.00097 * 17 16 14 46 46 H 0.97000 * 120.00447 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.47364 * 210.00706 * 26 16 14 48 48 H 1.09002 * 109.47090 * 330.00257 * 26 16 14 49 49 H 1.08998 * 109.46999 * 300.00039 * 27 26 16 50 50 H 1.08997 * 109.46656 * 60.00331 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3445 2.0005 0.5116 5 6 2.2254 1.7709 -1.4425 6 8 3.1437 0.8907 -2.0937 7 6 4.4384 0.8476 -1.4903 8 6 4.3121 0.3452 -0.0497 9 6 3.3606 1.2646 0.7219 10 1 3.7800 2.2696 0.7679 11 7 3.1741 0.7471 2.0840 12 6 2.1856 1.5465 2.8202 13 6 4.4521 0.6938 2.8065 14 6 4.2685 -0.0626 4.0969 15 8 3.1802 -0.5133 4.3860 16 7 5.3124 -0.2337 4.9321 17 6 5.1324 -0.9639 6.1893 18 6 5.3986 -2.4297 5.9616 19 1 5.6738 -2.7821 4.9785 20 6 5.2907 -3.3207 7.0081 21 7 4.9551 -2.8916 8.2052 22 14 5.6199 -5.1376 6.7256 23 1 7.0588 -5.4219 6.9580 24 1 4.7984 -5.9415 7.6659 25 1 5.2642 -5.4938 5.3286 26 6 6.6269 0.3102 4.5826 27 6 6.7517 1.7336 5.1298 28 6 8.0728 2.2800 4.7792 29 7 9.0909 2.7043 4.5084 30 1 -0.3633 0.5137 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8898 33 1 1.2736 1.7609 -1.9736 34 1 2.6304 2.7828 -1.4414 35 1 5.0808 0.1727 -2.0559 36 1 4.8725 1.8475 -1.4898 37 1 5.2927 0.3535 0.4262 38 1 3.9158 -0.6703 -0.0517 39 1 2.5596 2.5628 2.9436 40 1 1.2490 1.5690 2.2631 41 1 2.0148 1.1006 3.8000 42 1 4.7889 1.7074 3.0242 43 1 5.1963 0.1879 2.1915 44 1 5.8283 -0.5799 6.9352 45 1 4.1102 -0.8310 6.5436 46 1 4.8788 -3.5184 8.9415 47 1 7.4063 -0.3157 5.0169 48 1 6.7366 0.3269 3.4982 49 1 5.9723 2.3595 4.6954 50 1 6.6420 1.7168 6.2141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880424700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:30 Heat of formation + Delta-G solvation = -99.100235 kcal Electronic energy + Delta-G solvation = -31154.060006 eV Core-core repulsion = 26988.686006 eV Total energy + Delta-G solvation = -4165.374000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31535 -40.47479 -38.10271 -37.87503 -37.47935 -36.53411 -34.83879 -32.81480 -32.11878 -31.56761 -30.10154 -28.37516 -27.40419 -26.71174 -25.28938 -24.81515 -23.93519 -23.09473 -20.82544 -19.87543 -18.82897 -18.33620 -18.23224 -17.53855 -17.36190 -17.15877 -16.76555 -16.54717 -16.33065 -16.01773 -15.93446 -15.63181 -15.25217 -15.14661 -14.90626 -14.74751 -14.51424 -14.32146 -14.02365 -13.76268 -13.54154 -13.46433 -13.43323 -13.31643 -13.13780 -12.95555 -12.73728 -12.66417 -12.50311 -12.49380 -12.28577 -12.16444 -12.09308 -11.83942 -11.63185 -11.54559 -11.21881 -10.94202 -10.56428 -10.42179 -10.01485 -9.42842 -9.08263 -8.16188 -6.27791 1.39473 1.42480 1.51764 1.70897 1.85103 1.96463 2.24819 2.44718 2.79554 2.87705 3.13375 3.16555 3.25608 3.64882 3.80478 3.91048 3.92290 4.03005 4.12918 4.20078 4.28191 4.31703 4.33419 4.43373 4.50470 4.54025 4.55780 4.61016 4.61828 4.66309 4.71429 4.79562 4.85676 4.86373 4.92619 5.06856 5.09038 5.13774 5.21227 5.36634 5.39791 5.64920 5.90514 6.03452 6.15718 6.16495 6.26844 6.50897 6.61553 6.80280 6.87502 7.38289 7.62950 8.90201 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009546 B = 0.003500 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.498649 B = 7999.121967 C = 9616.120101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.382 6.382 3 C 0.056 3.944 4 H 0.081 0.919 5 C 0.042 3.958 6 O -0.396 6.396 7 C 0.063 3.937 8 C -0.147 4.147 9 C 0.088 3.912 10 H 0.078 0.922 11 N -0.534 5.534 12 C 0.025 3.975 13 C 0.042 3.958 14 C 0.502 3.498 15 O -0.569 6.569 16 N -0.600 5.600 17 C 0.263 3.737 18 C -0.538 4.538 19 H 0.051 0.949 20 C 0.012 3.988 21 N -0.926 5.926 22 Si 0.955 3.045 23 H -0.266 1.266 24 H -0.284 1.284 25 H -0.277 1.277 26 C 0.114 3.886 27 C -0.037 4.037 28 C 0.246 3.754 29 N -0.488 5.488 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.034 0.966 45 H 0.003 0.997 46 H 0.265 0.735 47 H 0.082 0.918 48 H 0.105 0.895 49 H 0.135 0.865 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.062 15.249 -17.958 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.301 6.301 3 C -0.003 4.003 4 H 0.099 0.901 5 C -0.035 4.035 6 O -0.315 6.315 7 C -0.013 4.013 8 C -0.185 4.185 9 C -0.020 4.020 10 H 0.096 0.904 11 N -0.259 5.259 12 C -0.122 4.122 13 C -0.088 4.088 14 C 0.291 3.709 15 O -0.448 6.448 16 N -0.332 5.332 17 C 0.142 3.858 18 C -0.577 4.577 19 H 0.069 0.931 20 C -0.187 4.187 21 N -0.566 5.566 22 Si 0.780 3.220 23 H -0.191 1.191 24 H -0.210 1.210 25 H -0.202 1.202 26 C -0.011 4.011 27 C -0.078 4.078 28 C -0.071 4.071 29 N -0.166 5.166 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.134 0.866 44 H 0.052 0.948 45 H 0.021 0.979 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.123 0.877 49 H 0.153 0.847 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.270 14.825 -18.211 23.592 hybrid contribution -0.341 -0.523 1.047 1.220 sum -2.612 14.302 -17.164 22.493 Atomic orbital electron populations 1.22849 0.80844 1.02949 1.00144 1.88060 1.19965 1.27158 1.94897 1.23004 0.94842 0.86120 0.96285 0.90081 1.23208 0.94651 0.93564 0.92115 1.87929 1.23162 1.66309 1.54114 1.22703 0.84472 1.01871 0.92290 1.22237 0.99719 1.00144 0.96392 1.21867 0.95040 0.97583 0.87471 0.90396 1.61421 1.08294 1.54495 1.01679 1.22449 0.95666 0.94844 0.99269 1.22139 0.93454 1.00717 0.92482 1.21112 0.83683 0.80354 0.85769 1.90645 1.27322 1.50994 1.75803 1.48090 1.09446 1.54151 1.21539 1.18744 0.95924 0.89934 0.81229 1.21762 1.46485 0.94195 0.95225 0.93112 1.25679 0.95030 1.03033 0.94918 1.70017 1.48973 1.36383 1.01212 0.85606 0.78522 0.80142 0.77690 1.19119 1.21012 1.20178 1.21500 0.85149 0.92418 1.02042 1.19822 0.86301 0.96426 1.05248 1.29116 0.94320 0.92064 0.91645 1.81247 1.13266 1.11039 1.11046 0.92711 0.90190 0.94055 0.88018 0.89950 0.88003 0.90987 0.89378 0.92534 0.93949 0.91404 0.92428 0.88784 0.86554 0.94832 0.97927 0.92639 0.89920 0.87729 0.84711 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.82 113.37 1.23 1.79 16 2 O -0.38 -9.79 9.58 -141.93 -1.36 -11.15 16 3 C 0.06 1.04 1.84 30.69 0.06 1.10 16 4 H 0.08 1.27 6.11 -2.39 -0.01 1.25 16 5 C 0.04 0.63 6.49 72.02 0.47 1.10 16 6 O -0.40 -8.03 10.70 -141.93 -1.52 -9.55 16 7 C 0.06 0.99 6.84 72.01 0.49 1.49 16 8 C -0.15 -2.81 4.97 30.68 0.15 -2.66 16 9 C 0.09 1.66 1.81 45.03 0.08 1.74 16 10 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 11 N -0.53 -13.67 4.18 -900.90 -3.77 -17.44 16 12 C 0.03 0.62 8.84 127.69 1.13 1.75 16 13 C 0.04 1.01 3.82 85.56 0.33 1.33 16 14 C 0.50 18.12 7.40 87.66 0.65 18.77 16 15 O -0.57 -27.13 13.89 -3.04 -0.04 -27.17 16 16 N -0.60 -21.28 2.46 -826.15 -2.03 -23.31 16 17 C 0.26 12.68 5.16 85.64 0.44 13.12 16 18 C -0.54 -29.36 9.39 25.60 0.24 -29.12 16 19 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 20 C 0.01 0.69 5.46 84.65 0.46 1.16 16 21 N -0.93 -54.01 13.29 21.45 0.28 -53.73 16 22 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 26 C 0.11 2.68 5.16 86.38 0.45 3.13 16 27 C -0.04 -0.63 6.02 28.79 0.17 -0.45 16 28 C 0.25 5.03 15.43 89.44 1.38 6.41 16 29 N -0.49 -12.90 18.54 20.00 0.37 -12.53 16 30 H 0.05 0.81 7.86 -2.38 -0.02 0.79 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 0.77 7.96 -2.39 -0.02 0.75 16 33 H 0.10 1.35 7.86 -2.39 -0.02 1.33 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.09 1.37 6.39 -2.39 -0.02 1.36 16 38 H 0.06 1.52 7.83 -2.39 -0.02 1.51 16 39 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 1.53 5.96 -2.39 -0.01 1.52 16 41 H 0.06 1.89 5.88 -2.39 -0.01 1.88 16 42 H 0.09 1.48 7.14 -2.38 -0.02 1.46 16 43 H 0.12 2.41 5.18 -2.39 -0.01 2.40 16 44 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 45 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 46 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16 48 H 0.10 1.84 6.45 -2.39 -0.02 1.83 16 49 H 0.14 1.55 7.20 -2.39 -0.02 1.53 16 50 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -79.41 401.45 2.63 -76.78 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.94 Total: 11.03 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 7.73 Total: 20.65 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -5.14 Total: -107.01 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -2.92 Total: -47.86 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -79.41 2.63 -76.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880424700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.320 kcal (2) G-P(sol) polarization free energy of solvation -79.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds