Wall clock time and date at job start Sat Apr 11 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99567 * 2 1 4 4 C 1.50699 * 109.47525 * 270.00167 * 3 2 1 5 5 H 1.08000 * 119.99635 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00485 * 179.97438 * 4 3 2 7 7 N 1.31522 * 119.99402 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00376 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46721 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46932 * 120.00267 * 8 6 4 11 11 H 1.48498 * 109.47433 * 240.00180 * 8 6 4 12 12 C 1.34774 * 120.00271 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99829 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00194 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.47230 * 180.02562 * 14 12 2 16 16 N 1.46894 * 109.47118 * 179.97438 * 15 14 12 17 17 C 1.46855 * 111.00181 * 189.99618 * 16 15 14 18 18 C 1.53065 * 109.49624 * 185.97811 * 17 16 15 19 19 C 1.52917 * 109.32838 * 301.08194 * 18 17 16 20 20 C 1.53279 * 109.58957 * 177.51175 * 19 18 17 21 21 C 1.53158 * 108.39945 * 58.50534 * 20 19 18 22 22 N 1.46054 * 109.91308 * 47.75722 * 21 20 19 23 23 C 1.33733 * 123.03336 * 340.41882 * 22 21 20 24 24 O 1.21508 * 118.48405 * 182.41676 * 23 22 21 25 25 O 1.34259 * 123.03710 * 2.42319 * 23 22 21 26 26 C 1.52908 * 109.54630 * 57.21777 * 19 18 17 27 27 C 1.46861 * 110.99978 * 314.21584 * 16 15 14 28 28 H 1.08998 * 109.47064 * 269.99322 * 1 2 3 29 29 H 1.08999 * 109.47858 * 30.00069 * 1 2 3 30 30 H 1.09000 * 109.47150 * 150.00160 * 1 2 3 31 31 H 1.09000 * 109.47229 * 30.00083 * 3 2 1 32 32 H 1.09005 * 109.47250 * 150.00097 * 3 2 1 33 33 H 0.97004 * 119.99207 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47132 * 59.99503 * 14 12 2 35 35 H 1.09001 * 109.46603 * 299.99465 * 14 12 2 36 36 H 1.08994 * 109.47216 * 59.99368 * 15 14 12 37 37 H 1.09001 * 109.46747 * 299.99200 * 15 14 12 38 38 H 1.09002 * 109.46223 * 65.96851 * 17 16 15 39 39 H 1.08998 * 109.46725 * 305.98671 * 17 16 15 40 40 H 1.08998 * 109.49550 * 181.13199 * 18 17 16 41 41 H 1.09001 * 109.49731 * 61.03971 * 18 17 16 42 42 H 1.09004 * 109.68064 * 178.23064 * 20 19 18 43 43 H 1.08993 * 109.68167 * 298.74028 * 20 19 18 44 44 H 1.08997 * 109.39676 * 167.89285 * 21 20 19 45 45 H 1.09004 * 109.39701 * 287.62615 * 21 20 19 46 46 H 0.96996 * 118.48606 * 160.39639 * 22 21 20 47 47 H 1.09003 * 109.48852 * 62.75377 * 26 19 18 48 48 H 1.08998 * 109.49403 * 182.83481 * 26 19 18 49 49 H 1.08989 * 109.46372 * 294.04188 * 27 16 15 50 50 H 1.09003 * 109.46169 * 54.02201 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0973 1.0964 -2.2417 6 6 3.1257 2.8782 -1.6727 7 7 3.5530 3.6183 -0.6730 8 14 3.4376 3.4172 -3.4338 9 1 2.8606 2.4166 -4.3672 10 1 2.7995 4.7376 -3.6678 11 1 4.9002 3.5262 -3.6665 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1670 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 6 2.3798 -3.6351 -0.0014 16 7 1.6454 -4.9073 -0.0020 17 6 2.5515 -6.0382 0.2362 18 6 1.7810 -7.3516 0.0812 19 6 0.6211 -7.3786 1.0774 20 6 -0.1918 -8.6637 0.8850 21 6 0.7411 -9.8610 1.0897 22 7 1.5220 -9.6802 2.3106 23 6 1.6998 -8.4894 2.8926 24 8 2.4022 -8.4271 3.8821 25 8 1.1380 -7.3594 2.4342 26 6 -0.2782 -6.1633 0.8484 27 6 0.5538 -4.8853 0.9802 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3635 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6083 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 4.0298 4.4442 -0.8503 34 1 0.7592 -2.5294 -0.8919 35 1 0.7586 -2.5306 0.8881 36 1 3.0058 -3.5777 0.8889 37 1 3.0071 -3.5770 -0.8910 38 1 2.9574 -5.9720 1.2457 39 1 3.3674 -6.0083 -0.4859 40 1 2.4487 -8.1905 0.2777 41 1 1.3906 -7.4268 -0.9337 42 1 -1.0004 -8.6994 1.6152 43 1 -0.6061 -8.6886 -0.1228 44 1 0.1483 -10.7721 1.1707 45 1 1.4157 -9.9441 0.2375 46 1 1.9302 -10.4599 2.7184 47 1 -0.7110 -6.2142 -0.1507 48 1 -1.0761 -6.1562 1.5910 49 1 0.9709 -4.8254 1.9854 50 1 -0.0810 -4.0181 0.7982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932761711.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:35 Heat of formation + Delta-G solvation = -106.271711 kcal Electronic energy + Delta-G solvation = -30469.726096 eV Core-core repulsion = 26304.041118 eV Total energy + Delta-G solvation = -4165.684978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77175 -39.44492 -38.70565 -37.12531 -36.00944 -34.81729 -33.87415 -32.61828 -31.63193 -30.98689 -29.16898 -27.60229 -25.96082 -25.49602 -24.13641 -23.64781 -23.09658 -21.95826 -20.63524 -19.67354 -18.30087 -17.99350 -17.73201 -16.81720 -16.52190 -16.49383 -15.75144 -15.53868 -15.40768 -15.29038 -15.06232 -14.77576 -14.53417 -14.27692 -14.22315 -13.92901 -13.67199 -12.95545 -12.83288 -12.60636 -12.42980 -12.31757 -12.17923 -12.09863 -11.89143 -11.78093 -11.74331 -11.58488 -11.40436 -11.20621 -11.05562 -10.91049 -10.78896 -10.56282 -10.49911 -10.35173 -10.14026 -9.73773 -9.59184 -8.86631 -8.42470 -8.40292 -7.61760 -6.02836 -4.07476 2.21994 2.52188 3.01706 3.30567 3.37575 3.40803 3.47675 3.63258 3.83782 3.91356 4.12015 4.16502 4.34053 4.42975 4.46639 4.73365 4.82787 4.87789 5.00806 5.03249 5.10102 5.14095 5.22979 5.23428 5.29912 5.30552 5.34699 5.48363 5.56019 5.57007 5.61882 5.72286 5.73992 5.80777 5.85854 5.94217 6.11381 6.18951 6.23477 6.33361 6.93992 6.94516 7.08525 7.31397 7.46725 7.56551 7.78401 7.93805 8.25309 8.44475 8.92329 9.12292 9.57589 11.05301 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026517 B = 0.002051 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.654615 B =13647.654441 C =13685.255884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.544 6.544 14 C -0.142 4.142 15 C 0.073 3.927 16 N -0.537 5.537 17 C 0.056 3.944 18 C -0.133 4.133 19 C 0.115 3.885 20 C -0.163 4.163 21 C 0.103 3.897 22 N -0.735 5.735 23 C 0.657 3.343 24 O -0.537 6.537 25 O -0.330 6.330 26 C -0.101 4.101 27 C 0.043 3.957 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.417 0.583 47 H 0.096 0.904 48 H 0.079 0.921 49 H 0.044 0.956 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.878 -29.072 1.245 31.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.422 6.422 14 C -0.182 4.182 15 C -0.054 4.054 16 N -0.262 5.262 17 C -0.072 4.072 18 C -0.171 4.171 19 C 0.078 3.922 20 C -0.201 4.201 21 C -0.021 4.021 22 N -0.402 5.402 23 C 0.410 3.590 24 O -0.422 6.422 25 O -0.242 6.242 26 C -0.138 4.138 27 C -0.085 4.085 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.124 0.876 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.255 0.745 47 H 0.115 0.885 48 H 0.098 0.902 49 H 0.063 0.937 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.141 -28.415 1.316 30.928 hybrid contribution 0.512 0.032 -0.197 0.550 sum -11.629 -28.383 1.120 30.694 Atomic orbital electron populations 1.21631 0.81493 1.02588 1.00322 1.48157 1.06164 1.07891 1.71373 1.19290 0.92571 0.78153 0.97510 1.21468 1.36346 1.06162 0.92314 0.92425 1.24957 0.95420 0.96437 0.97461 1.69954 1.38481 1.14340 1.30646 0.86433 0.78079 0.78269 0.84578 1.19803 1.20988 1.20878 1.20270 0.88080 0.85127 0.77487 1.90671 1.13991 1.87323 1.50207 1.21814 0.99426 0.93105 1.03869 1.21819 0.94907 0.86051 1.02658 1.62100 1.11782 1.03131 1.49233 1.21995 0.94933 0.89541 1.00773 1.22167 0.96713 0.98339 0.99857 1.22403 0.94288 0.96644 0.78872 1.22546 0.98698 0.93403 1.05420 1.21579 0.94324 0.99161 0.87081 1.45320 1.56365 1.09294 1.29244 1.17910 0.78622 0.79761 0.82717 1.91050 1.39062 1.85087 1.27040 1.86758 1.71925 1.33530 1.31940 1.21660 0.96858 0.91864 1.03444 1.22228 0.93935 0.97731 0.94626 0.93848 0.90821 0.92385 0.95055 0.93876 0.92792 0.88631 0.89531 0.93786 0.89554 0.94019 0.90051 0.90971 0.88679 0.89539 0.87593 0.89506 0.90723 0.74512 0.88534 0.90205 0.93724 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.85 0.61 1.92 16 2 N -0.60 -12.91 2.86 -182.96 -0.52 -13.43 16 3 C 0.24 6.49 5.16 -5.19 -0.03 6.47 16 4 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 12 C 0.50 10.50 7.67 -10.99 -0.08 10.42 16 13 O -0.54 -13.83 15.56 5.56 0.09 -13.75 16 14 C -0.14 -2.05 3.50 -27.88 -0.10 -2.15 16 15 C 0.07 1.05 4.56 -3.83 -0.02 1.03 16 16 N -0.54 -6.01 4.80 -234.62 -1.13 -7.13 16 17 C 0.06 0.58 5.31 -3.81 -0.02 0.56 16 18 C -0.13 -0.97 4.46 -26.74 -0.12 -1.09 16 19 C 0.11 0.82 0.69 -90.57 -0.06 0.76 16 20 C -0.16 -0.61 5.12 -26.51 -0.14 -0.75 16 21 C 0.10 0.32 6.51 -4.20 -0.03 0.29 16 22 N -0.73 -4.73 5.43 -65.89 -0.36 -5.09 16 23 C 0.66 7.45 8.03 53.59 0.43 7.88 16 24 O -0.54 -8.51 17.95 -19.40 -0.35 -8.86 16 25 O -0.33 -3.67 8.92 -39.40 -0.35 -4.02 16 26 C -0.10 -0.70 5.12 -26.74 -0.14 -0.83 16 27 C 0.04 0.42 4.74 -3.81 -0.02 0.40 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.10 1.24 7.40 -51.93 -0.38 0.86 16 35 H 0.09 1.07 6.17 -51.93 -0.32 0.75 16 36 H 0.04 0.71 8.04 -51.93 -0.42 0.29 16 37 H 0.09 1.35 8.10 -51.93 -0.42 0.93 16 38 H 0.04 0.53 7.81 -51.93 -0.41 0.12 16 39 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 40 H 0.07 0.50 6.37 -51.93 -0.33 0.17 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 45 H 0.07 0.17 7.11 -51.93 -0.37 -0.20 16 46 H 0.42 2.07 8.84 -40.82 -0.36 1.71 16 47 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.04 0.53 7.81 -51.94 -0.41 0.13 16 50 H 0.09 0.80 5.81 -51.93 -0.30 0.50 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -37.90 390.32 -9.35 -47.25 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -8.20 Total: -2.83 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -0.12 Total: 11.16 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -1.27 Total: -51.86 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.61 Total: -26.62 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.90 -9.35 -47.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932761711.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.025 kcal (2) G-P(sol) polarization free energy of solvation -37.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds