Wall clock time and date at job start Sat Apr 11 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99567 * 2 1 4 4 C 1.50699 * 109.47525 * 270.00167 * 3 2 1 5 5 H 1.08000 * 119.99635 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00485 * 179.97438 * 4 3 2 7 7 N 1.31522 * 119.99402 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00376 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46721 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46932 * 120.00267 * 8 6 4 11 11 H 1.48498 * 109.47433 * 240.00180 * 8 6 4 12 12 C 1.34774 * 120.00271 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99829 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00194 * 0.02562 * 12 2 1 15 15 C 1.53000 * 109.47230 * 180.02562 * 14 12 2 16 16 N 1.46894 * 109.47118 * 179.97438 * 15 14 12 17 17 C 1.46855 * 111.00181 * 189.99618 * 16 15 14 18 18 C 1.53065 * 109.49624 * 185.97811 * 17 16 15 19 19 C 1.52917 * 109.32838 * 301.08194 * 18 17 16 20 20 C 1.53279 * 109.58957 * 177.51175 * 19 18 17 21 21 C 1.53158 * 108.39945 * 58.50534 * 20 19 18 22 22 N 1.46054 * 109.91308 * 47.75722 * 21 20 19 23 23 C 1.33733 * 123.03336 * 340.41882 * 22 21 20 24 24 O 1.21508 * 118.48405 * 182.41676 * 23 22 21 25 25 O 1.34259 * 123.03710 * 2.42319 * 23 22 21 26 26 C 1.52908 * 109.54630 * 57.21777 * 19 18 17 27 27 C 1.46861 * 110.99978 * 314.21584 * 16 15 14 28 28 H 1.08998 * 109.47064 * 269.99322 * 1 2 3 29 29 H 1.08999 * 109.47858 * 30.00069 * 1 2 3 30 30 H 1.09000 * 109.47150 * 150.00160 * 1 2 3 31 31 H 1.09000 * 109.47229 * 30.00083 * 3 2 1 32 32 H 1.09005 * 109.47250 * 150.00097 * 3 2 1 33 33 H 0.97004 * 119.99207 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47132 * 59.99503 * 14 12 2 35 35 H 1.09001 * 109.46603 * 299.99465 * 14 12 2 36 36 H 1.08994 * 109.47216 * 59.99368 * 15 14 12 37 37 H 1.09001 * 109.46747 * 299.99200 * 15 14 12 38 38 H 1.09002 * 109.46223 * 65.96851 * 17 16 15 39 39 H 1.08998 * 109.46725 * 305.98671 * 17 16 15 40 40 H 1.08998 * 109.49550 * 181.13199 * 18 17 16 41 41 H 1.09001 * 109.49731 * 61.03971 * 18 17 16 42 42 H 1.09004 * 109.68064 * 178.23064 * 20 19 18 43 43 H 1.08993 * 109.68167 * 298.74028 * 20 19 18 44 44 H 1.08997 * 109.39676 * 167.89285 * 21 20 19 45 45 H 1.09004 * 109.39701 * 287.62615 * 21 20 19 46 46 H 0.96996 * 118.48606 * 160.39639 * 22 21 20 47 47 H 1.09003 * 109.48852 * 62.75377 * 26 19 18 48 48 H 1.08998 * 109.49403 * 182.83481 * 26 19 18 49 49 H 1.08989 * 109.46372 * 294.04188 * 27 16 15 50 50 H 1.09003 * 109.46169 * 54.02201 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0973 1.0964 -2.2417 6 6 3.1257 2.8782 -1.6727 7 7 3.5530 3.6183 -0.6730 8 14 3.4376 3.4172 -3.4338 9 1 2.8606 2.4166 -4.3672 10 1 2.7995 4.7376 -3.6678 11 1 4.9002 3.5262 -3.6665 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1670 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 6 2.3798 -3.6351 -0.0014 16 7 1.6454 -4.9073 -0.0020 17 6 2.5515 -6.0382 0.2362 18 6 1.7810 -7.3516 0.0812 19 6 0.6211 -7.3786 1.0774 20 6 -0.1918 -8.6637 0.8850 21 6 0.7411 -9.8610 1.0897 22 7 1.5220 -9.6802 2.3106 23 6 1.6998 -8.4894 2.8926 24 8 2.4022 -8.4271 3.8821 25 8 1.1380 -7.3594 2.4342 26 6 -0.2782 -6.1633 0.8484 27 6 0.5538 -4.8853 0.9802 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3635 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6083 2.0284 0.5138 32 1 3.1499 1.1385 0.5138 33 1 4.0298 4.4442 -0.8503 34 1 0.7592 -2.5294 -0.8919 35 1 0.7586 -2.5306 0.8881 36 1 3.0058 -3.5777 0.8889 37 1 3.0071 -3.5770 -0.8910 38 1 2.9574 -5.9720 1.2457 39 1 3.3674 -6.0083 -0.4859 40 1 2.4487 -8.1905 0.2777 41 1 1.3906 -7.4268 -0.9337 42 1 -1.0004 -8.6994 1.6152 43 1 -0.6061 -8.6886 -0.1228 44 1 0.1483 -10.7721 1.1707 45 1 1.4157 -9.9441 0.2375 46 1 1.9302 -10.4599 2.7184 47 1 -0.7110 -6.2142 -0.1507 48 1 -1.0761 -6.1562 1.5910 49 1 0.9709 -4.8254 1.9854 50 1 -0.0810 -4.0181 0.7982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932761711.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:35 Heat of formation + Delta-G solvation = -136.812343 kcal Electronic energy + Delta-G solvation = -30471.050438 eV Core-core repulsion = 26304.041118 eV Total energy + Delta-G solvation = -4167.009319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.42281 -40.82584 -39.81521 -38.05949 -36.61064 -36.55388 -34.87863 -34.59746 -32.51214 -31.76332 -30.27322 -29.17409 -27.30905 -26.46429 -25.15170 -24.75726 -24.04114 -23.15747 -21.57732 -20.22211 -19.83111 -18.72012 -18.64046 -18.47596 -18.05215 -17.23651 -17.12712 -16.77202 -16.59717 -16.29617 -15.97180 -15.73714 -15.71602 -15.34374 -15.05685 -14.83197 -14.78919 -14.24580 -14.00170 -13.74739 -13.46398 -13.43264 -13.38334 -13.21307 -13.09202 -12.87542 -12.78694 -12.65876 -12.50314 -12.43431 -12.35394 -12.21657 -12.16334 -12.08218 -11.84937 -11.67715 -11.14079 -11.03213 -10.66168 -10.60432 -10.26523 -9.43455 -9.39553 -8.23322 -6.38497 1.35930 1.38674 1.50698 1.52164 1.82914 1.83257 2.27196 2.41137 2.50561 2.91041 3.06143 3.41352 3.47670 3.61801 3.77608 3.87825 3.97788 4.06971 4.11756 4.18499 4.36354 4.38282 4.41560 4.51603 4.56018 4.58252 4.66681 4.70383 4.72979 4.81285 4.85437 4.88014 4.95638 4.97503 5.01300 5.01751 5.06451 5.11393 5.19221 5.21947 5.28279 5.55716 5.79757 5.83472 5.92399 6.04966 6.05087 6.65925 6.69096 6.78748 7.06955 7.27340 7.47797 8.84099 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026517 B = 0.002051 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.654615 B =13647.654441 C =13685.255884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.257 3.743 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.003 3.997 7 N -0.931 5.931 8 Si 0.971 3.029 9 H -0.264 1.264 10 H -0.268 1.268 11 H -0.283 1.283 12 C 0.492 3.508 13 O -0.604 6.604 14 C -0.120 4.120 15 C 0.079 3.921 16 N -0.521 5.521 17 C 0.051 3.949 18 C -0.125 4.125 19 C 0.103 3.897 20 C -0.155 4.155 21 C 0.095 3.905 22 N -0.718 5.718 23 C 0.653 3.347 24 O -0.601 6.601 25 O -0.357 6.357 26 C -0.095 4.095 27 C 0.036 3.964 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.023 0.977 32 H -0.007 1.007 33 H 0.267 0.733 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.012 0.988 37 H 0.068 0.932 38 H 0.007 0.993 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.141 0.859 44 H 0.120 0.880 45 H 0.092 0.908 46 H 0.424 0.576 47 H 0.126 0.874 48 H 0.091 0.909 49 H 0.014 0.986 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.414 -31.555 -1.583 35.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.343 5.343 3 C 0.135 3.865 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.196 4.196 7 N -0.571 5.571 8 Si 0.795 3.205 9 H -0.188 1.188 10 H -0.193 1.193 11 H -0.209 1.209 12 C 0.281 3.719 13 O -0.486 6.486 14 C -0.159 4.159 15 C -0.049 4.049 16 N -0.246 5.246 17 C -0.077 4.077 18 C -0.162 4.162 19 C 0.067 3.933 20 C -0.193 4.193 21 C -0.028 4.028 22 N -0.384 5.384 23 C 0.406 3.594 24 O -0.491 6.491 25 O -0.269 6.269 26 C -0.133 4.133 27 C -0.092 4.092 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.041 0.959 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.030 0.970 37 H 0.087 0.913 38 H 0.025 0.975 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.141 0.859 42 H 0.107 0.893 43 H 0.159 0.841 44 H 0.138 0.862 45 H 0.110 0.890 46 H 0.262 0.738 47 H 0.144 0.856 48 H 0.109 0.891 49 H 0.033 0.967 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.768 -30.946 -1.548 34.766 hybrid contribution 1.603 0.798 0.712 1.927 sum -14.165 -30.148 -0.836 33.321 Atomic orbital electron populations 1.21969 0.77589 1.04318 1.02594 1.48206 1.08607 1.06306 1.71132 1.18758 0.90994 0.80559 0.96154 1.21726 1.36701 1.06447 0.92949 0.92650 1.25935 0.94936 0.96482 1.02224 1.70078 1.39030 1.14848 1.33105 0.85311 0.77815 0.78460 0.78877 1.18831 1.19326 1.20889 1.21407 0.87798 0.86817 0.75840 1.90639 1.16943 1.88290 1.52693 1.21737 0.98878 0.88797 1.06524 1.21631 0.94853 0.88074 1.00377 1.62182 1.11476 1.01525 1.49401 1.22065 0.95620 0.91363 0.98655 1.22163 0.96639 0.95940 1.01466 1.22780 0.94578 0.99016 0.76906 1.22584 0.98070 0.91101 1.07530 1.21973 0.94667 1.00379 0.85749 1.45308 1.55614 1.07754 1.29765 1.18076 0.78235 0.80754 0.82343 1.90991 1.42027 1.86172 1.29938 1.86714 1.72013 1.33969 1.34186 1.21722 0.96352 0.89737 1.05453 1.22384 0.93702 1.00503 0.92596 0.91254 0.91549 0.88205 0.95886 0.98853 0.92430 0.85522 0.86651 0.96987 0.91318 0.97492 0.90363 0.90594 0.85885 0.89331 0.84124 0.86233 0.89012 0.73764 0.85615 0.89081 0.96746 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.23 10.24 127.77 1.31 3.54 16 2 N -0.61 -26.35 2.86 -851.14 -2.43 -28.78 16 3 C 0.26 14.28 5.16 85.63 0.44 14.72 16 4 C -0.54 -31.67 9.39 25.60 0.24 -31.43 16 5 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16 6 C 0.00 0.16 5.46 84.65 0.46 0.63 16 7 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 8 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 9 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 C 0.49 20.89 7.67 87.66 0.67 21.56 16 13 O -0.60 -32.56 15.56 -3.03 -0.05 -32.61 16 14 C -0.12 -3.29 3.50 29.85 0.10 -3.19 16 15 C 0.08 2.31 4.56 86.30 0.39 2.70 16 16 N -0.52 -11.08 4.80 -896.21 -4.30 -15.39 16 17 C 0.05 1.08 5.31 86.33 0.46 1.53 16 18 C -0.12 -1.51 4.46 30.59 0.14 -1.37 16 19 C 0.10 1.20 0.69 -10.76 -0.01 1.19 16 20 C -0.16 -0.45 5.12 30.74 0.16 -0.29 16 21 C 0.09 0.20 6.51 86.52 0.56 0.76 16 22 N -0.72 -8.05 5.43 -594.13 -3.23 -11.28 16 23 C 0.65 14.99 8.03 129.95 1.04 16.03 16 24 O -0.60 -20.32 17.95 19.93 0.36 -19.96 16 25 O -0.36 -7.92 8.92 -51.64 -0.46 -8.38 16 26 C -0.10 -0.98 5.12 30.59 0.16 -0.82 16 27 C 0.04 0.63 4.74 86.33 0.41 1.04 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 30 H 0.10 2.05 6.44 -2.39 -0.02 2.04 16 31 H 0.02 1.29 8.07 -2.39 -0.02 1.28 16 32 H -0.01 -0.43 7.42 -2.38 -0.02 -0.45 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 34 H 0.13 2.78 7.40 -2.39 -0.02 2.76 16 35 H 0.12 2.55 6.17 -2.39 -0.01 2.54 16 36 H 0.01 0.42 8.04 -2.39 -0.02 0.40 16 37 H 0.07 2.23 8.10 -2.39 -0.02 2.21 16 38 H 0.01 0.19 7.81 -2.39 -0.02 0.17 16 39 H 0.08 1.64 8.12 -2.39 -0.02 1.62 16 40 H 0.08 0.88 6.37 -2.39 -0.02 0.87 16 41 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 43 H 0.14 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 45 H 0.09 -0.03 7.11 -2.39 -0.02 -0.05 16 46 H 0.42 3.66 8.84 -92.71 -0.82 2.84 16 47 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.01 0.34 7.81 -2.39 -0.02 0.33 16 50 H 0.10 1.50 5.81 -2.39 -0.01 1.48 16 Total: -1.00 -92.07 390.32 -1.13 -93.21 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.13 Total: 6.32 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: 6.54 Total: 26.60 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -9.68 Total: -112.67 kcal Atomic # 8 Polarization: -60.80 SS G_CDS: -0.15 Total: -60.95 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -92.07 -1.13 -93.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932761711.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.605 kcal (2) G-P(sol) polarization free energy of solvation -92.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds