Wall clock time and date at job start Sat Apr 11 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34776 * 119.99864 * 2 1 4 4 O 1.21283 * 119.99926 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00167 * 359.97438 * 3 2 1 6 6 N 1.46502 * 109.46921 * 180.02562 * 5 3 2 7 7 C 1.46092 * 118.72891 * 269.98092 * 6 5 3 8 8 C 1.53022 * 109.92345 * 161.66355 * 7 6 5 9 9 O 1.43096 * 108.64926 * 49.13653 * 8 7 6 10 10 C 1.42967 * 113.07444 * 291.61775 * 9 8 7 11 11 C 1.33866 * 118.72735 * 90.00544 * 6 5 3 12 12 O 1.21279 * 118.83721 * 1.86058 * 11 6 5 13 13 C 1.46495 * 119.99774 * 180.02562 * 2 1 3 14 14 H 1.09000 * 108.44521 * 182.31139 * 13 2 1 15 15 C 1.52566 * 108.51412 * 64.76567 * 13 2 1 16 16 C 1.50878 * 109.35835 * 153.73581 * 15 13 2 17 17 C 1.53952 * 110.09974 * 91.88255 * 16 15 13 18 18 N 1.47600 * 112.13877 * 319.43898 * 17 16 15 19 19 C 1.36935 * 118.64422 * 137.89070 * 18 17 16 20 20 H 1.08005 * 120.00063 * 206.48390 * 19 18 17 21 21 C 1.38812 * 120.00163 * 26.48241 * 19 18 17 22 22 N 1.31621 * 119.99820 * 15.69124 * 21 19 18 23 23 Si 1.86799 * 120.00166 * 195.68451 * 21 19 18 24 24 H 1.48500 * 109.47113 * 90.00188 * 23 21 19 25 25 H 1.48496 * 109.47082 * 210.00085 * 23 21 19 26 26 H 1.48504 * 109.47357 * 330.00286 * 23 21 19 27 27 C 1.44575 * 122.71389 * 317.86005 * 18 17 16 28 28 C 1.47092 * 108.51431 * 299.99676 * 13 2 1 29 29 H 1.08996 * 109.47017 * 89.99764 * 1 2 3 30 30 H 1.08998 * 109.47161 * 210.00323 * 1 2 3 31 31 H 1.09000 * 109.46844 * 330.00044 * 1 2 3 32 32 H 1.09000 * 109.47048 * 60.00528 * 5 3 2 33 33 H 1.08993 * 109.47408 * 300.00344 * 5 3 2 34 34 H 1.08997 * 109.39545 * 281.80349 * 7 6 5 35 35 H 1.08996 * 109.39781 * 41.52613 * 7 6 5 36 36 H 1.09003 * 109.60429 * 168.91632 * 8 7 6 37 37 H 1.09001 * 109.60423 * 289.41068 * 8 7 6 38 38 H 1.09001 * 109.41684 * 289.55659 * 10 9 8 39 39 H 1.08993 * 109.41672 * 169.69395 * 10 9 8 40 40 H 1.09005 * 109.48758 * 273.69417 * 15 13 2 41 41 H 1.08999 * 109.49258 * 33.76465 * 15 13 2 42 42 H 1.08996 * 109.36863 * 331.68703 * 16 15 13 43 43 H 1.09004 * 109.26550 * 212.00687 * 16 15 13 44 44 H 1.08991 * 108.95161 * 198.74735 * 17 16 15 45 45 H 1.09005 * 108.94295 * 80.11735 * 17 16 15 46 46 H 0.96999 * 119.99806 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.45264 * 330.69630 * 27 18 17 48 48 H 1.08995 * 109.43203 * 210.75620 * 27 18 17 49 49 H 1.09004 * 109.32603 * 304.32385 * 28 13 2 50 50 H 1.09004 * 109.32962 * 63.79501 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 7 2.3375 3.5858 -0.0011 7 6 2.7935 4.1204 1.2798 8 6 4.0786 4.9268 1.0804 9 8 3.8825 5.8395 -0.0041 10 6 3.7620 5.1873 -1.2706 11 6 2.7555 4.0744 -1.1752 12 8 2.3068 3.6024 -2.1983 13 6 2.1975 -1.2687 -0.0006 14 1 3.2647 -1.0509 0.0412 15 6 1.9056 -1.9960 -1.3095 16 6 3.0582 -2.9116 -1.6408 17 6 2.8030 -4.3146 -1.0609 18 7 2.2086 -4.2589 0.2890 19 6 1.1932 -5.1251 0.5955 20 1 0.4688 -4.8619 1.3521 21 6 1.0950 -6.3414 -0.0663 22 7 2.1204 -6.8031 -0.7503 23 14 -0.4923 -7.3229 0.0142 24 1 -1.3788 -6.9233 -1.1081 25 1 -0.1841 -8.7718 -0.0903 26 1 -1.1758 -7.0540 1.3048 27 6 2.6546 -3.3280 1.3013 28 6 1.8271 -2.0224 1.2071 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.7585 2.5303 0.8892 33 1 0.7591 2.5299 -0.8907 34 1 2.0217 4.7667 1.6976 35 1 2.9858 3.2972 1.9678 36 1 4.3066 5.4824 1.9901 37 1 4.9014 4.2515 0.8455 38 1 4.7294 4.7771 -1.5604 39 1 3.4351 5.9082 -2.0198 40 1 0.9935 -2.5835 -1.2036 41 1 1.7782 -1.2673 -2.1100 42 1 3.9759 -2.5059 -1.2151 43 1 3.1622 -2.9815 -2.7236 44 1 3.7488 -4.8537 -1.0092 45 1 2.1260 -4.8537 -1.7237 46 1 2.0516 -7.6528 -1.2130 47 1 3.7094 -3.1010 1.1463 48 1 2.5201 -3.7726 2.2873 49 1 2.0187 -1.4094 2.0878 50 1 0.7663 -2.2698 1.1668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948441727.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:43 Heat of formation + Delta-G solvation = -69.155449 kcal Electronic energy + Delta-G solvation = -31374.000210 eV Core-core repulsion = 27209.924713 eV Total energy + Delta-G solvation = -4164.075496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.14650 -39.89080 -38.04172 -37.66095 -35.64756 -35.27222 -32.98260 -31.68559 -30.89685 -30.37324 -29.17454 -26.91287 -26.59077 -25.73173 -24.32935 -23.97691 -23.12219 -20.44247 -19.42672 -19.23805 -18.95029 -18.04955 -17.47548 -17.19846 -16.69514 -16.25027 -15.86979 -15.77836 -15.21533 -15.13950 -14.74411 -14.53766 -14.01678 -13.82312 -13.67052 -13.53882 -13.44358 -13.24599 -13.11494 -12.87045 -12.49603 -12.21605 -12.17486 -12.10592 -11.91690 -11.68567 -11.36279 -11.22610 -10.89849 -10.85774 -10.60862 -10.48900 -10.23414 -10.15521 -9.94191 -9.82032 -9.75147 -9.68970 -9.59941 -8.94931 -8.48696 -8.39090 -6.67635 -5.78279 -3.22609 2.15215 2.43956 2.65333 3.16876 3.34803 3.35921 3.42771 3.43977 3.96457 4.34980 4.45767 4.48738 4.62433 4.69350 4.82117 4.96364 5.03319 5.10105 5.14427 5.19905 5.21563 5.32053 5.34402 5.44800 5.50888 5.63246 5.71102 5.78288 5.82337 6.01411 6.03928 6.21472 6.32967 6.36253 6.45424 6.56039 6.65450 6.77008 6.78382 6.86408 6.94182 6.97716 6.99168 7.45231 7.52209 7.72148 7.74540 7.82141 8.23357 8.46602 9.23657 9.90513 10.36088 11.28900 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026175 B = 0.002512 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.453514 B =11144.169382 C =11227.655627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.608 5.608 3 C 0.497 3.503 4 O -0.540 6.540 5 C 0.091 3.909 6 N -0.587 5.587 7 C 0.083 3.917 8 C 0.044 3.956 9 O -0.372 6.372 10 C 0.053 3.947 11 C 0.493 3.507 12 O -0.538 6.538 13 C 0.155 3.845 14 H 0.086 0.914 15 C -0.109 4.109 16 C -0.141 4.141 17 C 0.179 3.821 18 N -0.590 5.590 19 C -0.259 4.259 20 H 0.065 0.935 21 C 0.005 3.995 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.163 3.837 28 C -0.153 4.153 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.025 0.975 45 H 0.074 0.926 46 H 0.253 0.747 47 H 0.033 0.967 48 H 0.050 0.950 49 H 0.048 0.952 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 23.557 4.078 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.342 5.342 3 C 0.283 3.717 4 O -0.417 6.417 5 C -0.035 4.035 6 N -0.320 5.320 7 C -0.040 4.040 8 C -0.033 4.033 9 O -0.290 6.290 10 C -0.027 4.027 11 C 0.281 3.719 12 O -0.415 6.415 13 C 0.054 3.946 14 H 0.104 0.896 15 C -0.147 4.147 16 C -0.180 4.180 17 C 0.054 3.946 18 N -0.311 5.311 19 C -0.388 4.388 20 H 0.083 0.917 21 C -0.194 4.194 22 N -0.547 5.547 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.034 3.966 28 C -0.194 4.194 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.149 0.851 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.056 23.362 3.468 23.618 hybrid contribution -0.989 -0.979 0.028 1.392 sum -1.046 22.383 3.495 22.679 Atomic orbital electron populations 1.21813 0.79950 1.03166 1.02116 1.48316 1.07062 1.06383 1.72404 1.20960 0.88492 0.85666 0.76628 1.90661 1.13816 1.87144 1.50083 1.21443 0.91961 0.84541 1.05587 1.47048 1.45423 1.33166 1.06396 1.22187 0.97625 0.98737 0.85484 1.22991 0.95940 0.92903 0.91456 1.88134 1.93420 1.32463 1.14983 1.22828 0.98075 0.94123 0.87625 1.20988 0.83004 0.84694 0.83211 1.90757 1.56255 1.60708 1.33766 1.20166 0.97116 0.81188 0.96138 0.89605 1.21260 1.00962 0.97621 0.94857 1.21987 0.96981 0.99127 0.99931 1.21020 0.97832 0.90031 0.85753 1.43672 1.41000 1.38626 1.07782 1.19190 1.03019 0.95708 1.20927 0.91745 1.25039 0.97147 0.96279 1.00932 1.70075 1.28122 1.19960 1.36544 0.86328 0.83500 0.79297 0.77838 1.21508 1.21810 1.20505 1.20552 0.94531 0.88474 0.93042 1.21867 1.02782 0.99266 0.95468 0.92411 0.89959 0.91754 0.87525 0.86635 0.90457 0.89375 0.86523 0.91298 0.88901 0.85125 0.90450 0.93529 0.93525 0.92721 0.95735 0.90736 0.93668 0.94833 0.93209 0.93303 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 9.68 59.85 0.58 1.37 16 2 N -0.61 -8.73 2.59 -177.48 -0.46 -9.19 16 3 C 0.50 7.30 7.74 -10.98 -0.08 7.21 16 4 O -0.54 -9.87 15.72 5.56 0.09 -9.78 16 5 C 0.09 0.99 4.35 -5.19 -0.02 0.96 16 6 N -0.59 -6.41 2.32 -175.79 -0.41 -6.82 16 7 C 0.08 0.62 6.63 -4.25 -0.03 0.59 16 8 C 0.04 0.30 6.90 37.17 0.26 0.56 16 9 O -0.37 -3.21 10.84 -35.23 -0.38 -3.59 16 10 C 0.05 0.48 6.99 35.84 0.25 0.73 16 11 C 0.49 6.19 7.58 -11.56 -0.09 6.10 16 12 O -0.54 -8.73 16.36 5.56 0.09 -8.64 16 13 C 0.16 2.66 1.97 -70.99 -0.14 2.52 16 14 H 0.09 1.66 6.03 -51.93 -0.31 1.35 16 15 C -0.11 -1.99 4.70 -28.02 -0.13 -2.12 16 16 C -0.14 -2.78 5.71 -27.30 -0.16 -2.93 16 17 C 0.18 4.24 4.67 -2.94 -0.01 4.23 16 18 N -0.59 -14.19 2.27 -172.10 -0.39 -14.58 16 19 C -0.26 -6.81 9.44 -15.06 -0.14 -6.95 16 20 H 0.06 1.67 7.88 -52.48 -0.41 1.25 16 21 C 0.00 0.13 4.87 -17.43 -0.08 0.04 16 22 N -0.90 -25.83 11.01 55.49 0.61 -25.22 16 23 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.16 3.34 5.66 -4.09 -0.02 3.32 16 28 C -0.15 -2.63 4.85 -28.58 -0.14 -2.77 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.94 6.37 -51.93 -0.33 0.61 16 31 H 0.06 0.49 6.44 -51.93 -0.33 0.15 16 32 H 0.11 0.78 7.30 -51.93 -0.38 0.40 16 33 H 0.12 1.30 7.20 -51.93 -0.37 0.93 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.65 8.13 -51.93 -0.42 0.22 16 36 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.13 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.54 7.48 -51.93 -0.39 1.16 16 41 H 0.05 0.83 8.05 -51.93 -0.42 0.41 16 42 H 0.05 0.91 7.31 -51.93 -0.38 0.53 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.64 8.03 -51.93 -0.42 0.22 16 45 H 0.07 1.97 6.33 -51.93 -0.33 1.64 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 48 H 0.05 1.03 7.99 -51.93 -0.41 0.61 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.07 1.16 6.63 -51.93 -0.34 0.82 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -34.31 386.34 -8.21 -42.52 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.19 Total: 0.35 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 0.03 Total: 12.85 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.65 Total: -55.80 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.20 Total: -22.01 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.31 -8.21 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948441727.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.634 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds