Wall clock time and date at job start Sat Apr 11 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34776 * 119.99864 * 2 1 4 4 O 1.21283 * 119.99926 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00167 * 359.97438 * 3 2 1 6 6 N 1.46502 * 109.46921 * 180.02562 * 5 3 2 7 7 C 1.46092 * 118.72891 * 269.98092 * 6 5 3 8 8 C 1.53022 * 109.92345 * 161.66355 * 7 6 5 9 9 O 1.43096 * 108.64926 * 49.13653 * 8 7 6 10 10 C 1.42967 * 113.07444 * 291.61775 * 9 8 7 11 11 C 1.33866 * 118.72735 * 90.00544 * 6 5 3 12 12 O 1.21279 * 118.83721 * 1.86058 * 11 6 5 13 13 C 1.46495 * 119.99774 * 180.02562 * 2 1 3 14 14 H 1.09000 * 108.44521 * 182.31139 * 13 2 1 15 15 C 1.52566 * 108.51412 * 64.76567 * 13 2 1 16 16 C 1.50878 * 109.35835 * 153.73581 * 15 13 2 17 17 C 1.53952 * 110.09974 * 91.88255 * 16 15 13 18 18 N 1.47600 * 112.13877 * 319.43898 * 17 16 15 19 19 C 1.36935 * 118.64422 * 137.89070 * 18 17 16 20 20 H 1.08005 * 120.00063 * 206.48390 * 19 18 17 21 21 C 1.38812 * 120.00163 * 26.48241 * 19 18 17 22 22 N 1.31621 * 119.99820 * 15.69124 * 21 19 18 23 23 Si 1.86799 * 120.00166 * 195.68451 * 21 19 18 24 24 H 1.48500 * 109.47113 * 90.00188 * 23 21 19 25 25 H 1.48496 * 109.47082 * 210.00085 * 23 21 19 26 26 H 1.48504 * 109.47357 * 330.00286 * 23 21 19 27 27 C 1.44575 * 122.71389 * 317.86005 * 18 17 16 28 28 C 1.47092 * 108.51431 * 299.99676 * 13 2 1 29 29 H 1.08996 * 109.47017 * 89.99764 * 1 2 3 30 30 H 1.08998 * 109.47161 * 210.00323 * 1 2 3 31 31 H 1.09000 * 109.46844 * 330.00044 * 1 2 3 32 32 H 1.09000 * 109.47048 * 60.00528 * 5 3 2 33 33 H 1.08993 * 109.47408 * 300.00344 * 5 3 2 34 34 H 1.08997 * 109.39545 * 281.80349 * 7 6 5 35 35 H 1.08996 * 109.39781 * 41.52613 * 7 6 5 36 36 H 1.09003 * 109.60429 * 168.91632 * 8 7 6 37 37 H 1.09001 * 109.60423 * 289.41068 * 8 7 6 38 38 H 1.09001 * 109.41684 * 289.55659 * 10 9 8 39 39 H 1.08993 * 109.41672 * 169.69395 * 10 9 8 40 40 H 1.09005 * 109.48758 * 273.69417 * 15 13 2 41 41 H 1.08999 * 109.49258 * 33.76465 * 15 13 2 42 42 H 1.08996 * 109.36863 * 331.68703 * 16 15 13 43 43 H 1.09004 * 109.26550 * 212.00687 * 16 15 13 44 44 H 1.08991 * 108.95161 * 198.74735 * 17 16 15 45 45 H 1.09005 * 108.94295 * 80.11735 * 17 16 15 46 46 H 0.96999 * 119.99806 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.45264 * 330.69630 * 27 18 17 48 48 H 1.08995 * 109.43203 * 210.75620 * 27 18 17 49 49 H 1.09004 * 109.32603 * 304.32385 * 28 13 2 50 50 H 1.09004 * 109.32962 * 63.79501 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 7 2.3375 3.5858 -0.0011 7 6 2.7935 4.1204 1.2798 8 6 4.0786 4.9268 1.0804 9 8 3.8825 5.8395 -0.0041 10 6 3.7620 5.1873 -1.2706 11 6 2.7555 4.0744 -1.1752 12 8 2.3068 3.6024 -2.1983 13 6 2.1975 -1.2687 -0.0006 14 1 3.2647 -1.0509 0.0412 15 6 1.9056 -1.9960 -1.3095 16 6 3.0582 -2.9116 -1.6408 17 6 2.8030 -4.3146 -1.0609 18 7 2.2086 -4.2589 0.2890 19 6 1.1932 -5.1251 0.5955 20 1 0.4688 -4.8619 1.3521 21 6 1.0950 -6.3414 -0.0663 22 7 2.1204 -6.8031 -0.7503 23 14 -0.4923 -7.3229 0.0142 24 1 -1.3788 -6.9233 -1.1081 25 1 -0.1841 -8.7718 -0.0903 26 1 -1.1758 -7.0540 1.3048 27 6 2.6546 -3.3280 1.3013 28 6 1.8271 -2.0224 1.2071 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.7585 2.5303 0.8892 33 1 0.7591 2.5299 -0.8907 34 1 2.0217 4.7667 1.6976 35 1 2.9858 3.2972 1.9678 36 1 4.3066 5.4824 1.9901 37 1 4.9014 4.2515 0.8455 38 1 4.7294 4.7771 -1.5604 39 1 3.4351 5.9082 -2.0198 40 1 0.9935 -2.5835 -1.2036 41 1 1.7782 -1.2673 -2.1100 42 1 3.9759 -2.5059 -1.2151 43 1 3.1622 -2.9815 -2.7236 44 1 3.7488 -4.8537 -1.0092 45 1 2.1260 -4.8537 -1.7237 46 1 2.0516 -7.6528 -1.2130 47 1 3.7094 -3.1010 1.1463 48 1 2.5201 -3.7726 2.2873 49 1 2.0187 -1.4094 2.0878 50 1 0.7663 -2.2698 1.1668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948441727.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:42 Heat of formation + Delta-G solvation = -91.928661 kcal Electronic energy + Delta-G solvation = -31374.987730 eV Core-core repulsion = 27209.924713 eV Total energy + Delta-G solvation = -4165.063017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.04187 -41.04293 -39.24827 -38.73782 -36.91464 -36.32729 -34.63001 -33.37490 -32.35156 -31.28681 -30.11510 -28.15677 -27.71283 -27.06900 -25.74194 -25.04038 -24.67637 -21.71710 -21.08064 -20.48807 -19.94990 -18.79352 -18.60533 -18.43868 -18.07584 -17.28112 -17.02675 -16.76509 -16.67323 -16.15422 -15.86973 -15.65837 -15.43976 -15.34332 -15.06662 -14.74044 -14.44940 -14.32069 -14.23349 -14.01456 -13.90908 -13.69274 -13.21112 -13.14937 -13.00134 -12.95296 -12.80219 -12.72710 -12.36252 -12.31725 -12.11976 -11.96351 -11.79416 -11.63066 -11.59406 -11.44945 -11.36955 -11.08031 -10.55970 -10.45188 -9.86007 -9.67362 -8.66650 -7.83789 -5.30762 1.24373 1.48033 1.49394 1.55276 1.57732 1.65400 2.11996 2.53033 2.74051 3.26399 3.30297 3.45828 3.65635 3.75348 3.80872 3.98107 4.07218 4.09610 4.18848 4.21579 4.29905 4.33887 4.38228 4.40522 4.43147 4.47919 4.61683 4.65845 4.70918 4.74626 4.79924 4.87160 4.93330 4.99897 5.06298 5.09653 5.12656 5.21584 5.27117 5.45004 5.53736 5.58675 5.67966 5.73645 5.78118 6.19795 6.39941 6.42233 6.86068 7.11431 7.19128 7.94082 8.35654 9.21943 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026175 B = 0.002512 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.453514 B =11144.169382 C =11227.655627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.609 5.609 3 C 0.491 3.509 4 O -0.582 6.582 5 C 0.095 3.905 6 N -0.589 5.589 7 C 0.077 3.923 8 C 0.041 3.959 9 O -0.375 6.375 10 C 0.057 3.943 11 C 0.482 3.518 12 O -0.585 6.585 13 C 0.163 3.837 14 H 0.064 0.936 15 C -0.097 4.097 16 C -0.130 4.130 17 C 0.192 3.808 18 N -0.602 5.602 19 C -0.259 4.259 20 H 0.071 0.929 21 C -0.051 4.051 22 N -0.939 5.939 23 Si 0.964 3.036 24 H -0.287 1.287 25 H -0.300 1.300 26 H -0.266 1.266 27 C 0.158 3.842 28 C -0.132 4.132 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.151 0.849 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.065 0.935 44 H -0.008 1.008 45 H 0.044 0.956 46 H 0.247 0.753 47 H 0.031 0.969 48 H 0.048 0.952 49 H 0.069 0.931 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 26.155 5.793 26.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.341 5.341 3 C 0.279 3.721 4 O -0.462 6.462 5 C -0.031 4.031 6 N -0.321 5.321 7 C -0.044 4.044 8 C -0.036 4.036 9 O -0.293 6.293 10 C -0.022 4.022 11 C 0.271 3.729 12 O -0.466 6.466 13 C 0.060 3.940 14 H 0.082 0.918 15 C -0.136 4.136 16 C -0.169 4.169 17 C 0.067 3.933 18 N -0.324 5.324 19 C -0.389 4.389 20 H 0.089 0.911 21 C -0.246 4.246 22 N -0.585 5.585 23 Si 0.793 3.207 24 H -0.213 1.213 25 H -0.227 1.227 26 H -0.190 1.190 27 C 0.030 3.970 28 C -0.172 4.172 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.169 0.831 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.167 0.833 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.164 0.836 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.010 0.990 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.049 0.951 48 H 0.066 0.934 49 H 0.088 0.912 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.796 26.011 5.248 26.596 hybrid contribution -0.391 -1.763 -0.437 1.858 sum -2.187 24.248 4.812 24.817 Atomic orbital electron populations 1.22069 0.77505 1.04985 1.02924 1.48294 1.08475 1.05233 1.72082 1.21696 0.88214 0.86757 0.75394 1.90644 1.15837 1.87783 1.51963 1.21543 0.91710 0.82325 1.07512 1.47277 1.44954 1.32610 1.07212 1.22465 0.98701 0.99302 0.83955 1.23194 0.95314 0.92970 0.92097 1.88138 1.93327 1.32800 1.15045 1.22831 0.97294 0.93588 0.88471 1.21636 0.83032 0.85144 0.83072 1.90724 1.58065 1.62452 1.35395 1.19800 0.96372 0.82558 0.95274 0.91805 1.21119 0.99304 0.97173 0.95973 1.21837 0.97799 0.96964 1.00317 1.20717 0.95250 0.91665 0.85644 1.43849 1.40874 1.39100 1.08536 1.19521 1.03305 0.95743 1.20333 0.91082 1.25788 0.99897 0.97570 1.01330 1.70244 1.30052 1.20211 1.37980 0.85311 0.79987 0.77182 0.78235 1.21346 1.22707 1.19033 1.20704 0.95054 0.89285 0.91943 1.21578 1.01816 0.97444 0.96411 0.92168 0.90374 0.87708 0.83108 0.86862 0.87647 0.89008 0.83296 0.92564 0.88478 0.83611 0.91894 0.92870 0.93358 0.91659 0.99040 0.93728 0.94339 0.95063 0.93398 0.91212 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 9.68 127.77 1.24 2.48 16 2 N -0.61 -16.18 2.59 -833.82 -2.16 -18.34 16 3 C 0.49 13.52 7.74 87.66 0.68 14.20 16 4 O -0.58 -20.88 15.72 -3.04 -0.05 -20.93 16 5 C 0.10 1.79 4.35 85.63 0.37 2.16 16 6 N -0.59 -11.52 2.32 -828.97 -1.92 -13.45 16 7 C 0.08 0.91 6.63 86.46 0.57 1.49 16 8 C 0.04 0.45 6.90 71.99 0.50 0.95 16 9 O -0.38 -5.61 10.84 -148.98 -1.62 -7.23 16 10 C 0.06 0.97 6.99 71.13 0.50 1.47 16 11 C 0.48 11.58 7.58 87.69 0.66 12.24 16 12 O -0.59 -18.91 16.36 -3.03 -0.05 -18.96 16 13 C 0.16 5.41 1.97 43.01 0.08 5.49 16 14 H 0.06 2.45 6.03 -2.39 -0.01 2.44 16 15 C -0.10 -3.52 4.70 29.76 0.14 -3.39 16 16 C -0.13 -5.21 5.71 30.23 0.17 -5.04 16 17 C 0.19 9.49 4.67 86.49 0.40 9.89 16 18 N -0.60 -29.36 2.27 -698.39 -1.59 -30.95 16 19 C -0.26 -13.67 9.44 84.03 0.79 -12.87 16 20 H 0.07 3.61 7.88 -2.91 -0.02 3.58 16 21 C -0.05 -2.79 4.87 84.86 0.41 -2.37 16 22 N -0.94 -55.44 11.01 21.65 0.24 -55.21 16 23 Si 0.96 44.12 29.58 68.60 2.03 46.15 16 24 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 C 0.16 6.44 5.66 87.37 0.49 6.93 16 28 C -0.13 -4.34 4.85 29.39 0.14 -4.20 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.55 6.37 -2.39 -0.02 1.54 16 31 H 0.10 1.09 6.44 -2.39 -0.02 1.08 16 32 H 0.15 1.44 7.30 -2.39 -0.02 1.43 16 33 H 0.11 2.27 7.20 -2.39 -0.02 2.25 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 1.05 8.13 -2.39 -0.02 1.03 16 36 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.77 8.09 -2.39 -0.02 0.76 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.15 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.06 2.49 7.48 -2.38 -0.02 2.47 16 41 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 42 H 0.05 1.91 7.31 -2.39 -0.02 1.90 16 43 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 44 H -0.01 -0.47 8.03 -2.39 -0.02 -0.49 16 45 H 0.04 2.45 6.33 -2.38 -0.02 2.43 16 46 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.03 1.27 8.06 -2.39 -0.02 1.26 16 48 H 0.05 1.95 7.99 -2.39 -0.02 1.93 16 49 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.07 2.21 6.63 -2.38 -0.02 2.19 16 Total: -1.00 -77.34 386.34 2.98 -74.36 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.93 Total: 15.14 kcal Atomic # 6 Polarization: 22.27 SS G_CDS: 7.16 Total: 29.43 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -5.43 Total: -117.94 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -1.71 Total: -47.12 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -77.34 2.98 -74.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948441727.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.571 kcal (2) G-P(sol) polarization free energy of solvation -77.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds