Wall clock time and date at job start Sat Apr 11 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00319 * 2 1 4 4 C 1.53001 * 109.47319 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46868 * 64.99906 * 4 3 2 6 6 C 1.46766 * 124.34669 * 90.00106 * 5 4 3 7 7 C 1.54482 * 105.46977 * 163.00550 * 6 5 4 8 8 H 1.09005 * 110.96860 * 267.25976 * 7 6 5 9 9 C 1.50701 * 110.96943 * 143.53575 * 7 6 5 10 10 O 1.21286 * 120.00007 * 359.97438 * 9 7 6 11 11 N 1.34778 * 120.00162 * 179.72515 * 9 7 6 12 12 C 1.47431 * 125.64516 * 359.68501 * 11 9 7 13 13 C 1.55132 * 104.71904 * 155.81954 * 12 11 9 14 14 C 1.55157 * 101.48342 * 37.29737 * 13 12 11 15 15 H 1.09002 * 110.87651 * 82.76914 * 14 13 12 16 16 N 1.46505 * 110.71935 * 205.96794 * 14 13 12 17 17 C 1.46495 * 119.99859 * 53.51884 * 16 14 13 18 18 C 1.36939 * 119.99947 * 233.52618 * 16 14 13 19 19 H 1.07999 * 119.99871 * 21.70552 * 18 16 14 20 20 C 1.38816 * 119.99765 * 201.71114 * 18 16 14 21 21 N 1.31615 * 119.99798 * 13.67626 * 20 18 16 22 22 Si 1.86804 * 119.99769 * 193.67826 * 20 18 16 23 23 H 1.48505 * 109.47079 * 60.00106 * 22 20 18 24 24 H 1.48500 * 109.46831 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47067 * 299.99972 * 22 20 18 26 26 C 1.47015 * 125.65065 * 179.97438 * 11 9 7 27 27 C 1.54623 * 101.76740 * 25.41455 * 7 6 5 28 28 C 1.34414 * 124.35115 * 270.02342 * 5 4 3 29 29 O 1.21284 * 124.94388 * 0.39014 * 28 5 4 30 30 H 1.09002 * 109.47527 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47319 * 300.00521 * 1 2 3 32 32 H 1.09003 * 109.47196 * 59.99818 * 1 2 3 33 33 H 1.09001 * 109.47240 * 59.99577 * 3 2 1 34 34 H 1.09001 * 109.47061 * 300.00164 * 3 2 1 35 35 H 1.08998 * 109.46975 * 304.99928 * 4 3 2 36 36 H 1.09004 * 109.47078 * 184.99719 * 4 3 2 37 37 H 1.08997 * 110.25011 * 44.00594 * 6 5 4 38 38 H 1.08999 * 110.31959 * 282.04233 * 6 5 4 39 39 H 1.08994 * 110.36943 * 274.75070 * 12 11 9 40 40 H 1.08998 * 110.36473 * 37.07614 * 12 11 9 41 41 H 1.09001 * 111.19493 * 279.19681 * 13 12 11 42 42 H 1.08999 * 110.90597 * 155.27742 * 13 12 11 43 43 H 1.09007 * 109.47034 * 94.47752 * 17 16 14 44 44 H 1.09007 * 109.47405 * 214.46924 * 17 16 14 45 45 H 1.08997 * 109.47614 * 334.47504 * 17 16 14 46 46 H 0.97000 * 119.99393 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.88307 * 300.43883 * 26 11 9 48 48 H 1.09004 * 109.88169 * 61.44878 * 26 11 9 49 49 H 1.09003 * 110.48867 * 93.88226 * 27 7 6 50 50 H 1.09005 * 110.48629 * 216.52431 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.3130 1.3076 -2.4706 7 6 5.1175 0.3214 -3.3460 8 1 6.1879 0.4261 -3.1686 9 6 4.7947 0.5093 -4.8060 10 8 3.9924 1.3529 -5.1460 11 7 5.4013 -0.2567 -5.7344 12 6 6.4005 -1.3063 -5.4628 13 6 6.3104 -2.2611 -6.6822 14 6 6.0675 -1.2593 -7.8418 15 1 7.0077 -0.8290 -8.1867 16 7 5.3602 -1.9088 -8.9482 17 6 4.1019 -2.6161 -8.6984 18 6 5.8753 -1.8547 -10.2158 19 1 6.9275 -1.6608 -10.3633 20 6 5.0451 -2.0491 -11.3113 21 7 3.7381 -2.0166 -11.1603 22 14 5.7832 -2.3569 -12.9995 23 1 6.6170 -3.5851 -12.9588 24 1 4.6925 -2.5323 -13.9920 25 1 6.6266 -1.1986 -13.3897 26 6 5.1806 -0.1801 -7.1858 27 6 4.6025 -1.0447 -2.8368 28 6 4.1250 -0.7601 -1.4298 29 8 3.9076 -1.6038 -0.5861 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6886 1.8463 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8508 0.5684 0.8427 36 1 3.9785 2.1764 0.0902 37 1 4.9219 2.1779 -2.2259 38 1 3.4048 1.6168 -2.9879 39 1 7.3974 -0.8716 -5.3913 40 1 6.1512 -1.8390 -4.5452 41 1 5.4733 -2.9518 -6.5808 42 1 7.2463 -2.8019 -6.8226 43 1 3.2640 -1.9454 -8.8890 44 1 4.0332 -3.4801 -9.3596 45 1 4.0720 -2.9492 -7.6610 46 1 3.1580 -2.1521 -11.9259 47 1 4.1321 -0.3738 -7.4121 48 1 5.4625 0.8072 -7.5520 49 1 3.7772 -1.3962 -3.4560 50 1 5.4102 -1.7766 -2.8248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971632674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:59 Heat of formation + Delta-G solvation = -71.019849 kcal Electronic energy + Delta-G solvation = -30555.963326 eV Core-core repulsion = 26391.806984 eV Total energy + Delta-G solvation = -4164.156343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.97928 -39.50159 -38.00681 -37.57585 -36.20288 -34.87264 -33.59532 -31.66635 -29.89697 -29.54718 -27.96319 -27.78963 -26.52493 -26.07620 -24.52379 -23.24528 -22.54374 -22.07122 -19.74990 -19.27190 -18.96421 -17.57884 -17.07982 -17.06639 -16.77731 -16.13912 -16.01928 -15.54337 -15.49472 -15.03911 -14.83942 -14.61823 -14.20675 -13.73171 -13.56699 -13.50723 -13.35090 -13.06423 -12.97279 -12.64101 -12.54483 -12.26296 -12.20218 -12.10610 -11.93665 -11.63541 -11.52524 -11.45573 -11.40480 -10.95297 -10.82558 -10.60950 -10.47735 -10.33548 -10.11482 -9.93711 -9.87787 -9.83861 -9.61020 -8.89173 -8.60146 -8.38812 -6.86715 -5.79225 -3.25998 2.51018 2.62319 2.72600 3.12302 3.35747 3.41641 3.42181 3.52789 4.05121 4.16875 4.43160 4.49133 4.68414 4.72247 4.78082 4.87753 4.93036 4.98022 5.03843 5.12487 5.12872 5.17986 5.25170 5.26253 5.36543 5.46435 5.47033 5.49509 5.54711 5.55870 5.71547 5.78065 5.85127 5.94968 6.29158 6.29488 6.31977 6.46298 6.61010 6.79137 6.82544 6.88882 6.96126 7.31575 7.67514 7.71080 7.75082 8.08168 8.23939 8.31842 9.15207 9.77829 10.25990 11.25318 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.002301 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.274037 B =12167.380286 C =12492.579900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.039 3.961 4 C 0.131 3.869 5 N -0.619 5.619 6 C 0.118 3.882 7 C -0.119 4.119 8 H 0.115 0.885 9 C 0.534 3.466 10 O -0.541 6.541 11 N -0.607 5.607 12 C 0.095 3.905 13 C -0.154 4.154 14 C 0.173 3.827 15 H 0.079 0.921 16 N -0.585 5.585 17 C 0.160 3.840 18 C -0.263 4.263 19 H 0.071 0.929 20 C 0.005 3.995 21 N -0.904 5.904 22 Si 0.907 3.093 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.086 3.914 27 C -0.144 4.144 28 C 0.526 3.474 29 O -0.517 6.517 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.030 0.970 44 H 0.045 0.955 45 H 0.003 0.997 46 H 0.255 0.745 47 H 0.073 0.927 48 H 0.060 0.940 49 H 0.109 0.891 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 6.396 22.177 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.039 4.039 4 C 0.008 3.992 5 N -0.354 5.354 6 C -0.006 4.006 7 C -0.141 4.141 8 H 0.133 0.867 9 C 0.321 3.679 10 O -0.419 6.419 11 N -0.340 5.340 12 C -0.028 4.028 13 C -0.194 4.194 14 C 0.062 3.938 15 H 0.097 0.903 16 N -0.306 5.306 17 C 0.015 3.985 18 C -0.392 4.392 19 H 0.088 0.912 20 C -0.194 4.194 21 N -0.548 5.548 22 Si 0.737 3.263 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C -0.038 4.038 27 C -0.185 4.185 28 C 0.314 3.686 29 O -0.391 6.391 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.021 0.979 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.079 0.921 49 H 0.127 0.873 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.045 6.254 22.379 23.260 hybrid contribution 0.005 0.269 -1.073 1.106 sum 1.051 6.523 21.306 22.307 Atomic orbital electron populations 1.22736 0.81271 1.02840 0.99648 1.88055 1.19363 1.26726 1.95286 1.23026 0.94485 0.85828 1.00575 1.21403 0.92250 0.99184 0.86323 1.48187 1.67465 1.07371 1.12414 1.21975 1.00617 0.93954 0.84016 1.22175 1.02438 0.96479 0.92966 0.86712 1.19653 0.80875 0.81007 0.86352 1.90713 1.34779 1.34634 1.81733 1.48516 1.41523 1.36017 1.07964 1.22513 0.91758 0.88993 0.99529 1.23391 1.02863 0.98397 0.94718 1.21359 0.94697 0.89952 0.87772 0.90325 1.43932 1.24654 1.58481 1.03499 1.20815 0.87604 0.96072 0.93983 1.19179 0.92435 1.45486 0.82127 0.91166 1.25041 0.95274 1.01085 0.98038 1.70072 1.01836 1.52990 1.29885 0.86298 0.77955 0.78329 0.83700 1.21001 1.21626 1.20872 1.22990 1.02691 1.01024 0.77117 1.22385 1.03855 0.97123 0.95108 1.20631 0.76587 0.82149 0.89280 1.90733 1.50828 1.49031 1.48537 0.89638 0.94303 0.94172 0.92401 0.92896 0.89085 0.88700 0.89869 0.89113 0.91386 0.90987 0.90229 0.90315 0.95172 0.93595 0.97900 0.93529 0.90830 0.92117 0.87283 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.51 10.22 -35.23 -0.36 -4.87 16 3 C 0.04 0.34 6.28 37.16 0.23 0.57 16 4 C 0.13 1.07 6.33 -4.04 -0.03 1.04 16 5 N -0.62 -6.37 2.90 -172.41 -0.50 -6.87 16 6 C 0.12 1.11 6.71 -3.12 -0.02 1.09 16 7 C -0.12 -1.19 2.88 -90.14 -0.26 -1.45 16 8 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 9 C 0.53 7.61 7.10 -10.98 -0.08 7.54 16 10 O -0.54 -9.74 15.83 5.55 0.09 -9.65 16 11 N -0.61 -8.86 3.32 -170.38 -0.57 -9.43 16 12 C 0.10 1.10 6.66 -2.40 -0.02 1.08 16 13 C -0.15 -2.23 6.60 -24.46 -0.16 -2.39 16 14 C 0.17 3.21 3.44 -66.10 -0.23 2.98 16 15 H 0.08 1.44 7.92 -51.93 -0.41 1.03 16 16 N -0.59 -13.81 2.93 -171.38 -0.50 -14.31 16 17 C 0.16 3.78 7.82 59.84 0.47 4.24 16 18 C -0.26 -6.89 9.63 -15.06 -0.14 -7.03 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 21 N -0.90 -25.79 10.68 55.49 0.59 -25.20 16 22 Si 0.91 21.26 29.58 -169.99 -5.03 16.23 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.09 1.58 6.51 -3.07 -0.02 1.56 16 27 C -0.14 -1.53 5.40 -26.74 -0.14 -1.67 16 28 C 0.53 6.69 7.72 -10.86 -0.08 6.61 16 29 O -0.52 -8.48 17.45 5.55 0.10 -8.38 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.83 7.93 -51.93 -0.41 0.42 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.04 6.96 -51.93 -0.36 0.68 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.68 5.45 -51.93 -0.28 0.39 16 41 H 0.08 1.25 6.05 -51.93 -0.31 0.94 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.03 0.79 7.33 -51.93 -0.38 0.41 16 44 H 0.05 1.17 7.23 -51.93 -0.38 0.80 16 45 H 0.00 0.05 6.02 -51.93 -0.31 -0.26 16 46 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.07 1.58 7.11 -51.93 -0.37 1.21 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.11 1.29 7.89 -51.93 -0.41 0.88 16 50 H 0.11 0.97 6.79 -51.93 -0.35 0.62 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -34.33 395.76 -7.85 -42.18 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.18 Total: -1.28 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 0.54 Total: 15.61 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.98 Total: -55.80 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.18 Total: -22.91 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.33 -7.85 -42.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971632674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.838 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds