Wall clock time and date at job start Sat Apr 11 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 114.00319 * 2 1 4 4 C 1.53001 * 109.47319 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46868 * 64.99906 * 4 3 2 6 6 C 1.46766 * 124.34669 * 90.00106 * 5 4 3 7 7 C 1.54482 * 105.46977 * 163.00550 * 6 5 4 8 8 H 1.09005 * 110.96860 * 267.25976 * 7 6 5 9 9 C 1.50701 * 110.96943 * 143.53575 * 7 6 5 10 10 O 1.21286 * 120.00007 * 359.97438 * 9 7 6 11 11 N 1.34778 * 120.00162 * 179.72515 * 9 7 6 12 12 C 1.47431 * 125.64516 * 359.68501 * 11 9 7 13 13 C 1.55132 * 104.71904 * 155.81954 * 12 11 9 14 14 C 1.55157 * 101.48342 * 37.29737 * 13 12 11 15 15 H 1.09002 * 110.87651 * 82.76914 * 14 13 12 16 16 N 1.46505 * 110.71935 * 205.96794 * 14 13 12 17 17 C 1.46495 * 119.99859 * 53.51884 * 16 14 13 18 18 C 1.36939 * 119.99947 * 233.52618 * 16 14 13 19 19 H 1.07999 * 119.99871 * 21.70552 * 18 16 14 20 20 C 1.38816 * 119.99765 * 201.71114 * 18 16 14 21 21 N 1.31615 * 119.99798 * 13.67626 * 20 18 16 22 22 Si 1.86804 * 119.99769 * 193.67826 * 20 18 16 23 23 H 1.48505 * 109.47079 * 60.00106 * 22 20 18 24 24 H 1.48500 * 109.46831 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47067 * 299.99972 * 22 20 18 26 26 C 1.47015 * 125.65065 * 179.97438 * 11 9 7 27 27 C 1.54623 * 101.76740 * 25.41455 * 7 6 5 28 28 C 1.34414 * 124.35115 * 270.02342 * 5 4 3 29 29 O 1.21284 * 124.94388 * 0.39014 * 28 5 4 30 30 H 1.09002 * 109.47527 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47319 * 300.00521 * 1 2 3 32 32 H 1.09003 * 109.47196 * 59.99818 * 1 2 3 33 33 H 1.09001 * 109.47240 * 59.99577 * 3 2 1 34 34 H 1.09001 * 109.47061 * 300.00164 * 3 2 1 35 35 H 1.08998 * 109.46975 * 304.99928 * 4 3 2 36 36 H 1.09004 * 109.47078 * 184.99719 * 4 3 2 37 37 H 1.08997 * 110.25011 * 44.00594 * 6 5 4 38 38 H 1.08999 * 110.31959 * 282.04233 * 6 5 4 39 39 H 1.08994 * 110.36943 * 274.75070 * 12 11 9 40 40 H 1.08998 * 110.36473 * 37.07614 * 12 11 9 41 41 H 1.09001 * 111.19493 * 279.19681 * 13 12 11 42 42 H 1.08999 * 110.90597 * 155.27742 * 13 12 11 43 43 H 1.09007 * 109.47034 * 94.47752 * 17 16 14 44 44 H 1.09007 * 109.47405 * 214.46924 * 17 16 14 45 45 H 1.08997 * 109.47614 * 334.47504 * 17 16 14 46 46 H 0.97000 * 119.99393 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.88307 * 300.43883 * 26 11 9 48 48 H 1.09004 * 109.88169 * 61.44878 * 26 11 9 49 49 H 1.09003 * 110.48867 * 93.88226 * 27 7 6 50 50 H 1.09005 * 110.48629 * 216.52431 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.3130 1.3076 -2.4706 7 6 5.1175 0.3214 -3.3460 8 1 6.1879 0.4261 -3.1686 9 6 4.7947 0.5093 -4.8060 10 8 3.9924 1.3529 -5.1460 11 7 5.4013 -0.2567 -5.7344 12 6 6.4005 -1.3063 -5.4628 13 6 6.3104 -2.2611 -6.6822 14 6 6.0675 -1.2593 -7.8418 15 1 7.0077 -0.8290 -8.1867 16 7 5.3602 -1.9088 -8.9482 17 6 4.1019 -2.6161 -8.6984 18 6 5.8753 -1.8547 -10.2158 19 1 6.9275 -1.6608 -10.3633 20 6 5.0451 -2.0491 -11.3113 21 7 3.7381 -2.0166 -11.1603 22 14 5.7832 -2.3569 -12.9995 23 1 6.6170 -3.5851 -12.9588 24 1 4.6925 -2.5323 -13.9920 25 1 6.6266 -1.1986 -13.3897 26 6 5.1806 -0.1801 -7.1858 27 6 4.6025 -1.0447 -2.8368 28 6 4.1250 -0.7601 -1.4298 29 8 3.9076 -1.6038 -0.5861 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6886 1.8463 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8508 0.5684 0.8427 36 1 3.9785 2.1764 0.0902 37 1 4.9219 2.1779 -2.2259 38 1 3.4048 1.6168 -2.9879 39 1 7.3974 -0.8716 -5.3913 40 1 6.1512 -1.8390 -4.5452 41 1 5.4733 -2.9518 -6.5808 42 1 7.2463 -2.8019 -6.8226 43 1 3.2640 -1.9454 -8.8890 44 1 4.0332 -3.4801 -9.3596 45 1 4.0720 -2.9492 -7.6610 46 1 3.1580 -2.1521 -11.9259 47 1 4.1321 -0.3738 -7.4121 48 1 5.4625 0.8072 -7.5520 49 1 3.7772 -1.3962 -3.4560 50 1 5.4102 -1.7766 -2.8248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971632674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:58 Heat of formation + Delta-G solvation = -95.262270 kcal Electronic energy + Delta-G solvation = -30557.014557 eV Core-core repulsion = 26391.806984 eV Total energy + Delta-G solvation = -4165.207573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94261 -40.63634 -38.97072 -38.75096 -37.21667 -36.54425 -34.46169 -33.36558 -31.28436 -30.45416 -29.22565 -28.72827 -28.05735 -27.24937 -25.76983 -24.29472 -23.91368 -23.02574 -20.87572 -20.59534 -20.01147 -18.93182 -18.57137 -17.90001 -17.58769 -17.44131 -17.00009 -16.71386 -16.42539 -16.39068 -15.85703 -15.74914 -15.47014 -15.05343 -14.98650 -14.58620 -14.38088 -14.29431 -14.16482 -13.81551 -13.63856 -13.60923 -13.28160 -13.12470 -12.97644 -12.75160 -12.69798 -12.51297 -12.41857 -12.38426 -12.33981 -12.19343 -12.11938 -12.08751 -11.78748 -11.40095 -11.12843 -10.75143 -10.62595 -10.60888 -9.72619 -9.62958 -8.82145 -7.82931 -5.31590 1.48731 1.50844 1.51061 1.57367 1.59075 1.80807 2.10551 2.52261 2.88257 3.14495 3.30036 3.34003 3.58081 3.63069 3.87472 3.88672 4.01370 4.07253 4.14896 4.20155 4.32568 4.35709 4.38354 4.44148 4.45515 4.49765 4.51167 4.53680 4.56193 4.70771 4.77555 4.78941 4.83263 4.85083 4.93687 4.96061 5.08426 5.22155 5.25729 5.34615 5.47175 5.54635 5.65306 5.70889 6.07864 6.24537 6.31471 6.57187 7.08485 7.13884 7.17899 7.85262 8.29261 9.20200 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.002301 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.274037 B =12167.380286 C =12492.579900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.033 3.967 4 C 0.124 3.876 5 N -0.613 5.613 6 C 0.119 3.881 7 C -0.102 4.102 8 H 0.157 0.843 9 C 0.532 3.468 10 O -0.585 6.585 11 N -0.607 5.607 12 C 0.101 3.899 13 C -0.143 4.143 14 C 0.164 3.836 15 H 0.085 0.915 16 N -0.602 5.602 17 C 0.180 3.820 18 C -0.264 4.264 19 H 0.081 0.919 20 C -0.056 4.056 21 N -0.941 5.941 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.300 1.300 25 H -0.274 1.274 26 C 0.099 3.901 27 C -0.140 4.140 28 C 0.519 3.481 29 O -0.561 6.561 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.100 0.900 43 H -0.007 1.007 44 H 0.018 0.982 45 H 0.033 0.967 46 H 0.247 0.753 47 H 0.032 0.968 48 H 0.046 0.954 49 H 0.092 0.908 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.556 7.061 24.272 25.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.044 4.044 4 C 0.003 3.997 5 N -0.346 5.346 6 C -0.004 4.004 7 C -0.123 4.123 8 H 0.174 0.826 9 C 0.322 3.678 10 O -0.466 6.466 11 N -0.340 5.340 12 C -0.021 4.021 13 C -0.183 4.183 14 C 0.056 3.944 15 H 0.103 0.897 16 N -0.323 5.323 17 C 0.035 3.965 18 C -0.394 4.394 19 H 0.098 0.902 20 C -0.251 4.251 21 N -0.587 5.587 22 Si 0.799 3.201 23 H -0.201 1.201 24 H -0.227 1.227 25 H -0.200 1.200 26 C -0.027 4.027 27 C -0.180 4.180 28 C 0.307 3.693 29 O -0.440 6.440 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.153 0.847 37 H 0.136 0.864 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.012 0.988 44 H 0.037 0.963 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.065 0.935 49 H 0.110 0.890 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.951 6.949 24.518 25.789 hybrid contribution -0.905 0.142 -1.652 1.889 sum 3.045 7.091 22.866 24.133 Atomic orbital electron populations 1.22825 0.80257 1.03052 1.00631 1.88011 1.20777 1.28882 1.95531 1.23213 0.94695 0.84816 1.01660 1.21692 0.92175 1.00823 0.84986 1.48303 1.66304 1.06819 1.13215 1.22025 1.00193 0.94783 0.83392 1.22164 1.04779 0.96150 0.89239 0.82590 1.20397 0.79672 0.79900 0.87879 1.90704 1.36554 1.36593 1.82713 1.48545 1.42332 1.36938 1.06176 1.22745 0.92524 0.87643 0.99167 1.23274 1.03381 0.97762 0.93845 1.21599 0.94031 0.91071 0.87723 0.89664 1.44125 1.24636 1.59367 1.04192 1.20451 0.86969 0.94192 0.94892 1.19605 0.92904 1.43602 0.83299 0.90171 1.25841 0.95629 1.01989 1.01630 1.70263 1.03099 1.55124 1.30246 0.85282 0.76893 0.78513 0.79380 1.20128 1.22660 1.19994 1.22489 1.00006 1.00116 0.80092 1.22373 1.04126 0.98009 0.93514 1.20957 0.76228 0.82586 0.89521 1.90710 1.53003 1.50304 1.49951 0.89952 0.92310 0.94117 0.89876 0.93117 0.90115 0.84725 0.86434 0.91413 0.87947 0.87861 0.91602 0.88123 0.98842 0.96299 0.94898 0.94400 0.94962 0.93525 0.88955 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.41 -9.78 10.22 -148.98 -1.52 -11.30 16 3 C 0.03 0.53 6.28 71.98 0.45 0.98 16 4 C 0.12 1.75 6.33 86.38 0.55 2.29 16 5 N -0.61 -11.22 2.90 -817.98 -2.37 -13.59 16 6 C 0.12 1.91 6.71 86.83 0.58 2.50 16 7 C -0.10 -1.68 2.88 -10.48 -0.03 -1.71 16 8 H 0.16 1.40 8.14 -2.38 -0.02 1.38 16 9 C 0.53 14.21 7.10 87.66 0.62 14.83 16 10 O -0.59 -21.05 15.83 -3.05 -0.05 -21.10 16 11 N -0.61 -16.49 3.32 -811.35 -2.70 -19.19 16 12 C 0.10 1.88 6.66 86.93 0.58 2.46 16 13 C -0.14 -3.73 6.60 32.06 0.21 -3.52 16 14 C 0.16 5.94 3.44 46.18 0.16 6.10 16 15 H 0.09 2.96 7.92 -2.39 -0.02 2.94 16 16 N -0.60 -28.70 2.93 -696.14 -2.04 -30.75 16 17 C 0.18 8.83 7.82 127.77 1.00 9.82 16 18 C -0.26 -13.90 9.63 84.03 0.81 -13.09 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 20 C -0.06 -3.09 5.08 84.86 0.43 -2.65 16 21 N -0.94 -55.93 10.68 21.65 0.23 -55.70 16 22 Si 0.97 44.31 29.58 68.60 2.03 46.34 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 C 0.10 3.63 6.51 86.73 0.56 4.20 16 27 C -0.14 -2.59 5.40 30.59 0.17 -2.42 16 28 C 0.52 12.36 7.72 87.90 0.68 13.04 16 29 O -0.56 -18.13 17.45 -3.04 -0.05 -18.18 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.08 1.35 7.93 -2.39 -0.02 1.33 16 36 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.47 6.96 -2.39 -0.02 1.45 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.10 1.37 5.45 -2.39 -0.01 1.36 16 41 H 0.07 1.92 6.05 -2.39 -0.01 1.91 16 42 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 43 H -0.01 -0.38 7.33 -2.38 -0.02 -0.40 16 44 H 0.02 0.99 7.23 -2.38 -0.02 0.97 16 45 H 0.03 1.37 6.02 -2.39 -0.01 1.36 16 46 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 47 H 0.03 1.45 7.11 -2.38 -0.02 1.43 16 48 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 49 H 0.09 2.07 7.89 -2.39 -0.02 2.05 16 50 H 0.14 1.80 6.79 -2.38 -0.02 1.78 16 Total: -1.00 -80.55 395.76 2.48 -78.08 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.93 Total: 10.82 kcal Atomic # 6 Polarization: 26.56 SS G_CDS: 8.02 Total: 34.57 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -6.88 Total: -119.22 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -1.62 Total: -50.59 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -80.55 2.48 -78.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971632674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.186 kcal (2) G-P(sol) polarization free energy of solvation -80.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds