Wall clock time and date at job start Sat Apr 11 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 119.99418 * 2 1 4 4 H 1.08000 * 119.99728 * 160.39635 * 3 2 1 5 5 C 1.38808 * 120.00514 * 340.39252 * 3 2 1 6 6 N 1.31619 * 120.00159 * 157.19767 * 5 3 2 7 7 Si 1.86802 * 119.99949 * 337.20302 * 5 3 2 8 8 H 1.48503 * 109.47035 * 86.21665 * 7 5 3 9 9 H 1.48495 * 109.47201 * 206.21513 * 7 5 3 10 10 H 1.48497 * 109.47097 * 326.21893 * 7 5 3 11 11 C 1.46500 * 120.00134 * 179.72996 * 2 1 3 12 12 H 1.08996 * 110.88513 * 176.12193 * 11 2 1 13 13 C 1.55157 * 111.00571 * 52.19239 * 11 2 1 14 14 C 1.54326 * 102.94057 * 206.42371 * 13 11 2 15 15 N 1.47026 * 107.26985 * 22.19667 * 14 13 11 16 16 C 1.34776 * 125.64469 * 181.09715 * 15 14 13 17 17 O 1.21284 * 120.00061 * 179.97438 * 16 15 14 18 18 C 1.50696 * 120.00070 * 359.95198 * 16 15 14 19 19 C 1.53004 * 109.47019 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.46955 * 180.02562 * 19 18 16 21 21 H 1.08995 * 110.33372 * 54.30227 * 20 19 18 22 22 C 1.54482 * 110.36948 * 176.55089 * 20 19 18 23 23 C 1.54688 * 103.98036 * 142.73505 * 22 20 19 24 24 C 1.54482 * 104.07907 * 0.13555 * 23 22 20 25 25 H 1.08997 * 110.37285 * 94.75947 * 24 23 22 26 26 C 1.50696 * 110.46890 * 217.05323 * 24 23 22 27 27 N 1.34786 * 119.99485 * 291.89018 * 26 24 23 28 28 O 1.21271 * 120.00445 * 111.88690 * 26 24 23 29 29 O 1.44424 * 104.80097 * 335.92813 * 24 23 22 30 30 C 1.47417 * 108.70483 * 1.05444 * 15 14 13 31 31 H 1.08998 * 109.47233 * 87.12640 * 1 2 3 32 32 H 1.09006 * 109.47069 * 207.12564 * 1 2 3 33 33 H 1.08998 * 109.47526 * 327.11899 * 1 2 3 34 34 H 0.97004 * 119.99780 * 179.97438 * 6 5 3 35 35 H 1.08996 * 110.71817 * 324.78721 * 13 11 2 36 36 H 1.09001 * 110.71864 * 88.06331 * 13 11 2 37 37 H 1.08994 * 109.88293 * 262.77567 * 14 13 11 38 38 H 1.09005 * 110.00583 * 141.68137 * 14 13 11 39 39 H 1.09004 * 109.47438 * 300.00153 * 18 16 15 40 40 H 1.08995 * 109.47435 * 60.00566 * 18 16 15 41 41 H 1.09001 * 109.47134 * 299.99720 * 19 18 16 42 42 H 1.09003 * 109.47332 * 60.00501 * 19 18 16 43 43 H 1.09001 * 110.50942 * 261.45220 * 22 20 19 44 44 H 1.08998 * 110.51192 * 24.16396 * 22 20 19 45 45 H 1.08995 * 110.58507 * 241.44831 * 23 22 20 46 46 H 1.09000 * 110.42559 * 118.74188 * 23 22 20 47 47 H 0.96994 * 119.99943 * 359.97438 * 27 26 24 48 48 H 0.96999 * 119.99741 * 180.02562 * 27 26 24 49 49 H 1.09003 * 110.37024 * 217.03344 * 30 15 14 50 50 H 1.09007 * 110.45709 * 94.75772 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1826 1.2131 0.3138 5 6 1.5159 2.3532 -0.4034 6 7 1.9706 3.5214 -0.0022 7 14 0.0176 2.2661 -1.5156 8 1 -1.2030 2.0884 -0.6886 9 1 -0.0927 3.5241 -2.2969 10 1 0.1573 1.1166 -2.4452 11 6 2.1976 -1.2687 0.0060 12 1 3.2717 -1.0975 -0.0637 13 6 1.7067 -2.1997 -1.1340 14 6 2.0245 -3.6087 -0.5905 15 7 2.1177 -3.5013 0.8728 16 6 2.4026 -4.5117 1.7180 17 8 2.4540 -4.3071 2.9123 18 6 2.6567 -5.8959 1.1790 19 6 2.9537 -6.8483 2.3391 20 6 3.2124 -8.2535 1.7918 21 1 3.9983 -8.2273 1.0371 22 6 3.5994 -9.2141 2.9381 23 6 2.9211 -10.5495 2.5516 24 6 2.2087 -10.2367 1.2170 25 1 2.8412 -10.5165 0.3746 26 6 0.8881 -10.9588 1.1427 27 7 0.8596 -12.3026 1.0422 28 8 -0.1490 -10.3309 1.1734 29 8 1.9999 -8.8078 1.2363 30 6 1.8491 -2.1051 1.2624 31 1 -0.3633 0.0515 -1.0263 32 1 -0.3633 -0.9147 0.4686 33 1 -0.3634 0.8630 0.5579 34 1 1.5280 4.3371 -0.2844 35 1 0.6352 -2.0809 -1.2945 36 1 2.2592 -2.0075 -2.0538 37 1 2.9732 -3.9579 -0.9978 38 1 1.2275 -4.3014 -0.8613 39 1 1.7752 -6.2437 0.6405 40 1 3.5101 -5.8710 0.5015 41 1 3.8352 -6.5007 2.8780 42 1 2.1000 -6.8733 3.0164 43 1 4.6818 -9.3336 2.9872 44 1 3.2109 -8.8501 3.8891 45 1 2.1970 -10.8453 3.3108 46 1 3.6693 -11.3297 2.4114 47 1 1.6890 -12.8048 1.0173 48 1 0.0096 -12.7674 0.9940 49 1 2.4848 -1.8157 2.0992 50 1 0.7984 -1.9779 1.5234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971963608.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:12 Heat of formation + Delta-G solvation = -90.013795 kcal Electronic energy + Delta-G solvation = -29651.096257 eV Core-core repulsion = 25486.116275 eV Total energy + Delta-G solvation = -4164.979982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.72648 -39.84306 -38.79488 -37.60786 -35.02401 -34.31296 -33.72566 -32.45255 -31.78602 -30.31822 -29.40165 -28.18691 -26.33339 -25.48565 -23.68104 -22.54898 -22.24385 -21.38639 -20.95349 -19.46245 -18.89248 -18.18124 -17.40883 -17.17053 -16.97018 -16.64792 -16.27789 -15.98579 -15.25264 -15.18112 -14.94380 -14.72120 -14.43522 -14.14219 -13.84820 -13.52427 -13.30100 -13.19790 -13.19057 -12.63684 -12.45265 -12.31498 -12.20748 -12.07173 -11.93861 -11.82397 -11.59984 -11.38475 -11.28462 -11.04980 -10.91646 -10.88081 -10.45236 -10.21119 -10.20517 -10.16693 -10.06557 -10.01057 -9.62301 -9.41901 -8.72258 -8.35771 -7.11569 -5.96309 -3.29748 2.12805 2.66125 2.83328 3.17341 3.35030 3.48488 3.51287 3.58895 3.97933 4.17820 4.32452 4.41633 4.52801 4.59366 4.63101 4.75522 4.76067 4.91459 5.02178 5.07568 5.16398 5.17816 5.24798 5.29480 5.35294 5.39214 5.49448 5.53348 5.61769 5.68964 5.74009 5.82902 5.90056 6.06100 6.12803 6.21601 6.22505 6.30789 6.37617 6.38948 6.49053 6.60362 6.64987 6.78518 6.79664 7.76864 7.77645 7.86077 8.28159 8.36766 8.89085 9.69751 9.98695 11.19152 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025132 B = 0.001954 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.868857 B =14324.158489 C =14982.130109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.595 5.595 3 C -0.267 4.267 4 H 0.090 0.910 5 C 0.023 3.977 6 N -0.904 5.904 7 Si 0.894 3.106 8 H -0.288 1.288 9 H -0.307 1.307 10 H -0.278 1.278 11 C 0.176 3.824 12 H 0.088 0.912 13 C -0.155 4.155 14 C 0.104 3.896 15 N -0.615 5.615 16 C 0.525 3.475 17 O -0.548 6.548 18 C -0.134 4.134 19 C -0.096 4.096 20 C 0.072 3.928 21 H 0.075 0.925 22 C -0.149 4.149 23 C -0.144 4.144 24 C 0.056 3.944 25 H 0.095 0.905 26 C 0.521 3.479 27 N -0.854 5.854 28 O -0.517 6.517 29 O -0.338 6.338 30 C 0.085 3.915 31 H 0.014 0.986 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.263 0.737 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.401 0.599 48 H 0.405 0.595 49 H 0.076 0.924 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 -34.567 0.399 34.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.316 5.316 3 C -0.395 4.395 4 H 0.108 0.892 5 C -0.176 4.176 6 N -0.547 5.547 7 Si 0.725 3.275 8 H -0.215 1.215 9 H -0.235 1.235 10 H -0.204 1.204 11 C 0.066 3.934 12 H 0.106 0.894 13 C -0.195 4.195 14 C -0.020 4.020 15 N -0.350 5.350 16 C 0.314 3.686 17 O -0.427 6.427 18 C -0.174 4.174 19 C -0.134 4.134 20 C 0.014 3.986 21 H 0.093 0.907 22 C -0.187 4.187 23 C -0.182 4.182 24 C -0.006 4.006 25 H 0.113 0.887 26 C 0.304 3.696 27 N -0.420 5.420 28 O -0.390 6.390 29 O -0.256 6.256 30 C -0.039 4.039 31 H 0.032 0.968 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.229 0.771 48 H 0.237 0.763 49 H 0.094 0.906 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.875 -33.553 1.050 33.793 hybrid contribution -0.697 -0.581 -0.864 1.253 sum 3.178 -34.135 0.186 34.283 Atomic orbital electron populations 1.21462 0.84619 1.00542 0.98400 1.44055 1.00613 1.01576 1.85377 1.18929 0.98060 0.83083 1.39438 0.89241 1.25078 0.98069 0.94935 0.99469 1.69870 1.42627 0.97355 1.44863 0.86972 0.83260 0.75372 0.81881 1.21540 1.23528 1.20437 1.21441 0.96782 0.84878 0.90327 0.89430 1.23241 1.02589 0.93210 1.00498 1.22034 1.00878 0.98934 0.80144 1.48504 1.69217 1.09811 1.07432 1.20309 0.76497 0.85858 0.85935 1.90690 1.52497 1.84135 1.15331 1.21608 1.04174 0.91919 0.99694 1.21414 1.04099 0.90497 0.97391 1.23187 0.86999 0.94167 0.94242 0.90684 1.23027 1.01475 0.93989 1.00226 1.22936 1.00043 0.99011 0.96205 1.22809 0.93834 0.84667 0.99308 0.88743 1.20282 0.90924 0.82615 0.75792 1.43750 1.12690 1.07175 1.78423 1.90812 1.34540 1.66413 1.47285 1.89322 1.37026 1.15379 1.83916 1.22925 1.01283 0.79412 1.00290 0.96788 0.94120 0.92243 0.92706 0.90753 0.90157 0.91644 0.91836 0.88365 0.89155 0.89499 0.90038 0.89804 0.89784 0.90147 0.89580 0.77068 0.76328 0.90558 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.06 6.92 59.85 0.41 2.48 16 2 N -0.60 -13.87 2.82 -171.03 -0.48 -14.35 16 3 C -0.27 -7.38 10.05 -15.06 -0.15 -7.53 16 4 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 5 C 0.02 0.68 5.24 -17.43 -0.09 0.58 16 6 N -0.90 -27.67 13.97 55.49 0.78 -26.90 16 7 Si 0.89 22.53 23.91 -169.99 -4.06 18.47 16 8 H -0.29 -7.02 6.43 56.52 0.36 -6.66 16 9 H -0.31 -7.89 7.11 56.52 0.40 -7.49 16 10 H -0.28 -6.85 6.59 56.52 0.37 -6.48 16 11 C 0.18 3.34 3.54 -65.78 -0.23 3.11 16 12 H 0.09 1.70 7.94 -51.93 -0.41 1.28 16 13 C -0.16 -2.40 6.50 -24.90 -0.16 -2.56 16 14 C 0.10 1.33 6.49 -3.06 -0.02 1.31 16 15 N -0.62 -9.60 3.33 -170.52 -0.57 -10.17 16 16 C 0.53 8.16 7.85 -10.99 -0.09 8.08 16 17 O -0.55 -10.51 16.24 5.55 0.09 -10.42 16 18 C -0.13 -1.49 4.82 -27.88 -0.13 -1.63 16 19 C -0.10 -0.99 4.14 -26.73 -0.11 -1.10 16 20 C 0.07 0.56 3.26 -25.95 -0.08 0.48 16 21 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 22 C -0.15 -0.86 6.65 -25.07 -0.17 -1.03 16 23 C -0.14 -0.66 6.63 -25.07 -0.17 -0.83 16 24 C 0.06 0.38 3.70 -27.11 -0.10 0.28 16 25 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 26 C 0.52 4.44 7.35 -10.98 -0.08 4.36 16 27 N -0.85 -3.09 8.87 31.22 0.28 -2.81 16 28 O -0.52 -7.38 17.39 -13.63 -0.24 -7.62 16 29 O -0.34 -3.56 10.32 -54.42 -0.56 -4.12 16 30 C 0.09 1.55 6.47 -2.53 -0.02 1.53 16 31 H 0.01 0.32 5.02 -51.93 -0.26 0.06 16 32 H 0.04 0.77 6.40 -51.93 -0.33 0.44 16 33 H 0.06 1.40 5.99 -51.93 -0.31 1.09 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.07 1.20 7.03 -51.93 -0.37 0.83 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.11 7.96 -51.93 -0.41 0.70 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 42 H 0.08 1.01 8.10 -51.93 -0.42 0.58 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 45 H 0.08 0.43 7.87 -51.93 -0.41 0.02 16 46 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 47 H 0.40 0.05 8.83 -40.82 -0.36 -0.31 16 48 H 0.41 1.22 8.93 -40.82 -0.36 0.86 16 49 H 0.08 1.50 8.04 -51.93 -0.42 1.09 16 50 H 0.07 1.25 6.40 -51.93 -0.33 0.92 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -37.83 392.52 -8.28 -46.10 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -8.23 Total: -1.64 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -1.19 Total: 7.54 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.00 Total: -54.22 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.71 Total: -22.16 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.06 Total: 18.47 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.83 -8.28 -46.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971963608.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.911 kcal (2) G-P(sol) polarization free energy of solvation -37.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds