Wall clock time and date at job start Sat Apr 11 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 119.99418 * 2 1 4 4 H 1.08000 * 119.99728 * 160.39635 * 3 2 1 5 5 C 1.38808 * 120.00514 * 340.39252 * 3 2 1 6 6 N 1.31619 * 120.00159 * 157.19767 * 5 3 2 7 7 Si 1.86802 * 119.99949 * 337.20302 * 5 3 2 8 8 H 1.48503 * 109.47035 * 86.21665 * 7 5 3 9 9 H 1.48495 * 109.47201 * 206.21513 * 7 5 3 10 10 H 1.48497 * 109.47097 * 326.21893 * 7 5 3 11 11 C 1.46500 * 120.00134 * 179.72996 * 2 1 3 12 12 H 1.08996 * 110.88513 * 176.12193 * 11 2 1 13 13 C 1.55157 * 111.00571 * 52.19239 * 11 2 1 14 14 C 1.54326 * 102.94057 * 206.42371 * 13 11 2 15 15 N 1.47026 * 107.26985 * 22.19667 * 14 13 11 16 16 C 1.34776 * 125.64469 * 181.09715 * 15 14 13 17 17 O 1.21284 * 120.00061 * 179.97438 * 16 15 14 18 18 C 1.50696 * 120.00070 * 359.95198 * 16 15 14 19 19 C 1.53004 * 109.47019 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.46955 * 180.02562 * 19 18 16 21 21 H 1.08995 * 110.33372 * 54.30227 * 20 19 18 22 22 C 1.54482 * 110.36948 * 176.55089 * 20 19 18 23 23 C 1.54688 * 103.98036 * 142.73505 * 22 20 19 24 24 C 1.54482 * 104.07907 * 0.13555 * 23 22 20 25 25 H 1.08997 * 110.37285 * 94.75947 * 24 23 22 26 26 C 1.50696 * 110.46890 * 217.05323 * 24 23 22 27 27 N 1.34786 * 119.99485 * 291.89018 * 26 24 23 28 28 O 1.21271 * 120.00445 * 111.88690 * 26 24 23 29 29 O 1.44424 * 104.80097 * 335.92813 * 24 23 22 30 30 C 1.47417 * 108.70483 * 1.05444 * 15 14 13 31 31 H 1.08998 * 109.47233 * 87.12640 * 1 2 3 32 32 H 1.09006 * 109.47069 * 207.12564 * 1 2 3 33 33 H 1.08998 * 109.47526 * 327.11899 * 1 2 3 34 34 H 0.97004 * 119.99780 * 179.97438 * 6 5 3 35 35 H 1.08996 * 110.71817 * 324.78721 * 13 11 2 36 36 H 1.09001 * 110.71864 * 88.06331 * 13 11 2 37 37 H 1.08994 * 109.88293 * 262.77567 * 14 13 11 38 38 H 1.09005 * 110.00583 * 141.68137 * 14 13 11 39 39 H 1.09004 * 109.47438 * 300.00153 * 18 16 15 40 40 H 1.08995 * 109.47435 * 60.00566 * 18 16 15 41 41 H 1.09001 * 109.47134 * 299.99720 * 19 18 16 42 42 H 1.09003 * 109.47332 * 60.00501 * 19 18 16 43 43 H 1.09001 * 110.50942 * 261.45220 * 22 20 19 44 44 H 1.08998 * 110.51192 * 24.16396 * 22 20 19 45 45 H 1.08995 * 110.58507 * 241.44831 * 23 22 20 46 46 H 1.09000 * 110.42559 * 118.74188 * 23 22 20 47 47 H 0.96994 * 119.99943 * 359.97438 * 27 26 24 48 48 H 0.96999 * 119.99741 * 180.02562 * 27 26 24 49 49 H 1.09003 * 110.37024 * 217.03344 * 30 15 14 50 50 H 1.09007 * 110.45709 * 94.75772 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1826 1.2131 0.3138 5 6 1.5159 2.3532 -0.4034 6 7 1.9706 3.5214 -0.0022 7 14 0.0176 2.2661 -1.5156 8 1 -1.2030 2.0884 -0.6886 9 1 -0.0927 3.5241 -2.2969 10 1 0.1573 1.1166 -2.4452 11 6 2.1976 -1.2687 0.0060 12 1 3.2717 -1.0975 -0.0637 13 6 1.7067 -2.1997 -1.1340 14 6 2.0245 -3.6087 -0.5905 15 7 2.1177 -3.5013 0.8728 16 6 2.4026 -4.5117 1.7180 17 8 2.4540 -4.3071 2.9123 18 6 2.6567 -5.8959 1.1790 19 6 2.9537 -6.8483 2.3391 20 6 3.2124 -8.2535 1.7918 21 1 3.9983 -8.2273 1.0371 22 6 3.5994 -9.2141 2.9381 23 6 2.9211 -10.5495 2.5516 24 6 2.2087 -10.2367 1.2170 25 1 2.8412 -10.5165 0.3746 26 6 0.8881 -10.9588 1.1427 27 7 0.8596 -12.3026 1.0422 28 8 -0.1490 -10.3309 1.1734 29 8 1.9999 -8.8078 1.2363 30 6 1.8491 -2.1051 1.2624 31 1 -0.3633 0.0515 -1.0263 32 1 -0.3633 -0.9147 0.4686 33 1 -0.3634 0.8630 0.5579 34 1 1.5280 4.3371 -0.2844 35 1 0.6352 -2.0809 -1.2945 36 1 2.2592 -2.0075 -2.0538 37 1 2.9732 -3.9579 -0.9978 38 1 1.2275 -4.3014 -0.8613 39 1 1.7752 -6.2437 0.6405 40 1 3.5101 -5.8710 0.5015 41 1 3.8352 -6.5007 2.8780 42 1 2.1000 -6.8733 3.0164 43 1 4.6818 -9.3336 2.9872 44 1 3.2109 -8.8501 3.8891 45 1 2.1970 -10.8453 3.3108 46 1 3.6693 -11.3297 2.4114 47 1 1.6890 -12.8048 1.0173 48 1 0.0096 -12.7674 0.9940 49 1 2.4848 -1.8157 2.0992 50 1 0.7984 -1.9779 1.5234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971963608.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:11 Heat of formation + Delta-G solvation = -120.177576 kcal Electronic energy + Delta-G solvation = -29652.404256 eV Core-core repulsion = 25486.116275 eV Total energy + Delta-G solvation = -4166.287982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36576 -41.03783 -39.50378 -39.00195 -36.71804 -34.91391 -34.52310 -33.76283 -32.92544 -31.74828 -30.29102 -29.37492 -28.18827 -26.47674 -25.01916 -23.87466 -23.00792 -22.00157 -21.47339 -21.03837 -20.06777 -19.02708 -18.67279 -18.15366 -17.88429 -17.83281 -17.37282 -16.95921 -16.55726 -16.26755 -15.87557 -15.77234 -15.36006 -15.13151 -15.10251 -14.65100 -14.62684 -14.47956 -14.22729 -14.12040 -13.89990 -13.68960 -13.33662 -13.22545 -12.99993 -12.70396 -12.62227 -12.49799 -12.40719 -12.13166 -12.10025 -12.00479 -11.91155 -11.64413 -11.54569 -11.37401 -11.06598 -10.91832 -10.76807 -10.71797 -10.63622 -9.68840 -9.06977 -8.16832 -5.46836 1.34389 1.43041 1.52359 1.54291 1.62205 1.95531 2.20960 2.42815 3.02204 3.09639 3.25180 3.44248 3.63149 3.75539 3.81249 3.91471 3.96211 4.00615 4.09708 4.15444 4.21059 4.27356 4.33279 4.38706 4.45525 4.48377 4.55765 4.64739 4.66900 4.69305 4.75659 4.82986 4.90903 4.92719 4.96712 5.04125 5.07478 5.11719 5.20127 5.22583 5.29965 5.34095 5.77940 5.78556 5.92706 6.09833 6.45673 6.55923 6.85169 7.14034 7.32517 7.59833 7.91915 9.02311 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025132 B = 0.001954 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.868857 B =14324.158489 C =14982.130109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.608 5.608 3 C -0.255 4.255 4 H 0.057 0.943 5 C -0.037 4.037 6 N -0.955 5.955 7 Si 0.957 3.043 8 H -0.275 1.275 9 H -0.315 1.315 10 H -0.262 1.262 11 C 0.169 3.831 12 H 0.077 0.923 13 C -0.145 4.145 14 C 0.108 3.892 15 N -0.617 5.617 16 C 0.518 3.482 17 O -0.594 6.594 18 C -0.121 4.121 19 C -0.095 4.095 20 C 0.073 3.927 21 H 0.104 0.896 22 C -0.150 4.150 23 C -0.136 4.136 24 C 0.051 3.949 25 H 0.130 0.870 26 C 0.514 3.486 27 N -0.828 5.828 28 O -0.588 6.588 29 O -0.378 6.378 30 C 0.094 3.906 31 H 0.023 0.977 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.262 0.738 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.126 0.874 47 H 0.422 0.578 48 H 0.410 0.590 49 H 0.049 0.951 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.275 -38.724 -1.751 39.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.330 5.330 3 C -0.385 4.385 4 H 0.074 0.926 5 C -0.232 4.232 6 N -0.601 5.601 7 Si 0.787 3.213 8 H -0.201 1.201 9 H -0.245 1.245 10 H -0.187 1.187 11 C 0.060 3.940 12 H 0.096 0.904 13 C -0.184 4.184 14 C -0.014 4.014 15 N -0.350 5.350 16 C 0.309 3.691 17 O -0.475 6.475 18 C -0.160 4.160 19 C -0.133 4.133 20 C 0.016 3.984 21 H 0.122 0.878 22 C -0.188 4.188 23 C -0.174 4.174 24 C -0.010 4.010 25 H 0.148 0.852 26 C 0.299 3.701 27 N -0.394 5.394 28 O -0.468 6.468 29 O -0.297 6.297 30 C -0.032 4.032 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.143 0.857 41 H 0.105 0.895 42 H 0.067 0.933 43 H 0.129 0.871 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.145 0.855 47 H 0.254 0.746 48 H 0.242 0.758 49 H 0.068 0.932 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.560 -37.846 -1.129 38.137 hybrid contribution -0.812 0.609 -0.084 1.019 sum 3.748 -37.237 -1.213 37.445 Atomic orbital electron populations 1.21476 0.83607 1.01148 0.98728 1.44098 1.01405 1.01680 1.85831 1.18868 0.96952 0.84949 1.37683 0.92564 1.25743 1.01742 0.94524 1.01156 1.70005 1.45112 0.98125 1.46849 0.85928 0.80168 0.75287 0.79926 1.20098 1.24462 1.18715 1.21548 0.96050 0.83954 0.92423 0.90442 1.23124 1.02527 0.93418 0.99345 1.22215 1.03623 0.97704 0.77889 1.48605 1.69014 1.08481 1.08944 1.21218 0.75270 0.87231 0.85370 1.90670 1.54396 1.84979 1.17495 1.21629 1.05600 0.88544 1.00250 1.21380 1.02703 0.92477 0.96762 1.23257 0.86916 0.92624 0.95567 0.87845 1.23058 1.03122 0.93995 0.98618 1.22963 1.00360 0.99466 0.94580 1.23109 0.93262 0.82906 1.01685 0.85220 1.20797 0.90844 0.83722 0.74745 1.43571 1.14120 1.05820 1.75932 1.90779 1.36851 1.68107 1.51032 1.89284 1.38527 1.17591 1.84290 1.22577 1.00057 0.81454 0.99063 0.95944 0.91227 0.94332 0.92944 0.90862 0.88746 0.88368 0.89319 0.87980 0.85739 0.89481 0.93336 0.87122 0.91634 0.91457 0.85531 0.74639 0.75841 0.93241 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 4.00 6.92 127.77 0.88 4.88 16 2 N -0.61 -28.23 2.82 -695.02 -1.96 -30.19 16 3 C -0.26 -14.45 10.05 84.03 0.84 -13.61 16 4 H 0.06 3.47 8.03 -2.91 -0.02 3.45 16 5 C -0.04 -2.16 5.24 84.86 0.44 -1.72 16 6 N -0.95 -60.43 13.97 21.65 0.30 -60.13 16 7 Si 0.96 46.63 23.91 68.60 1.64 48.27 16 8 H -0.27 -12.68 6.43 99.48 0.64 -12.04 16 9 H -0.32 -15.71 7.11 99.48 0.71 -15.00 16 10 H -0.26 -11.96 6.59 99.48 0.66 -11.30 16 11 C 0.17 6.30 3.54 46.38 0.16 6.46 16 12 H 0.08 3.02 7.94 -2.39 -0.02 3.00 16 13 C -0.14 -4.03 6.50 31.78 0.21 -3.82 16 14 C 0.11 2.35 6.49 86.73 0.56 2.91 16 15 N -0.62 -18.28 3.33 -811.78 -2.70 -20.98 16 16 C 0.52 15.66 7.85 87.66 0.69 16.35 16 17 O -0.59 -23.32 16.24 -3.04 -0.05 -23.37 16 18 C -0.12 -2.41 4.82 29.85 0.14 -2.27 16 19 C -0.10 -1.86 4.14 30.60 0.13 -1.74 16 20 C 0.07 0.97 3.26 31.10 0.10 1.07 16 21 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 22 C -0.15 -1.34 6.65 31.67 0.21 -1.13 16 23 C -0.14 -0.82 6.63 31.67 0.21 -0.61 16 24 C 0.05 0.56 3.70 30.35 0.11 0.67 16 25 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 26 C 0.51 8.10 7.35 87.65 0.64 8.74 16 27 N -0.83 -4.09 8.87 -173.53 -1.54 -5.63 16 28 O -0.59 -17.12 17.39 15.35 0.27 -16.86 16 29 O -0.38 -7.31 10.32 -130.63 -1.35 -8.66 16 30 C 0.09 3.43 6.47 86.86 0.56 3.99 16 31 H 0.02 0.94 5.02 -2.39 -0.01 0.93 16 32 H 0.07 2.52 6.40 -2.38 -0.02 2.50 16 33 H 0.04 1.78 5.99 -2.39 -0.01 1.77 16 34 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 35 H 0.07 2.09 7.03 -2.39 -0.02 2.08 16 36 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.10 2.04 7.96 -2.39 -0.02 2.02 16 40 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.09 1.66 8.10 -2.39 -0.02 1.64 16 42 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 43 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.06 0.82 7.87 -2.39 -0.02 0.80 16 45 H 0.07 0.60 7.87 -2.39 -0.02 0.58 16 46 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 47 H 0.42 -1.40 8.83 -92.71 -0.82 -2.22 16 48 H 0.41 1.76 8.93 -92.71 -0.83 0.94 16 49 H 0.05 2.04 8.04 -2.39 -0.02 2.02 16 50 H 0.06 2.18 6.40 -2.38 -0.02 2.17 16 Total: -1.00 -89.04 392.52 -0.28 -89.32 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -0.80 Total: 8.04 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 5.90 Total: 20.18 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -5.90 Total: -116.93 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -1.13 Total: -48.88 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.64 Total: 48.27 kcal Total: -89.04 -0.28 -89.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971963608.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.855 kcal (2) G-P(sol) polarization free energy of solvation -89.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds