Wall clock time and date at job start Sat Apr 11 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47016 * 111.00142 * 2 1 4 4 C 1.53100 * 109.25648 * 182.39044 * 3 2 1 5 5 O 1.43014 * 109.25671 * 303.14854 * 4 3 2 6 6 C 1.43014 * 113.73843 * 58.67304 * 5 4 3 7 7 H 1.09004 * 109.50821 * 61.30685 * 6 5 4 8 8 C 1.50707 * 109.50351 * 181.39123 * 6 5 4 9 9 O 1.21276 * 120.00321 * 4.91589 * 8 6 5 10 10 N 1.34776 * 119.99745 * 184.91148 * 8 6 5 11 11 C 1.47491 * 125.66257 * 0.02562 * 10 8 6 12 12 C 1.55024 * 104.89446 * 155.98412 * 11 10 8 13 13 C 1.54515 * 101.52940 * 36.37189 * 12 11 10 14 14 C 1.47187 * 125.66246 * 180.02562 * 10 8 6 15 15 C 1.52513 * 110.05299 * 206.91215 * 13 12 11 16 16 N 1.47308 * 108.40235 * 287.89635 * 15 13 12 17 17 C 1.36936 * 121.06217 * 130.64779 * 16 15 13 18 18 H 1.07997 * 120.00311 * 205.73283 * 17 16 15 19 19 C 1.38817 * 119.99974 * 25.73146 * 17 16 15 20 20 N 1.31617 * 120.00153 * 16.76095 * 19 17 16 21 21 Si 1.86805 * 119.99833 * 196.75828 * 19 17 16 22 22 H 1.48493 * 109.46726 * 90.00166 * 21 19 17 23 23 H 1.48503 * 109.46970 * 210.00152 * 21 19 17 24 24 H 1.48497 * 109.47071 * 330.00109 * 21 19 17 25 25 C 1.47160 * 117.87684 * 310.62062 * 16 15 13 26 26 C 1.53289 * 108.54430 * 51.12676 * 25 16 15 27 27 O 1.42067 * 110.33080 * 83.93753 * 13 12 11 28 28 C 1.47025 * 110.99269 * 123.67723 * 2 1 3 29 29 H 1.09001 * 109.47188 * 56.04812 * 1 2 3 30 30 H 1.08998 * 109.47412 * 176.04678 * 1 2 3 31 31 H 1.09005 * 109.47559 * 296.05147 * 1 2 3 32 32 H 1.08996 * 109.50903 * 62.45348 * 3 2 1 33 33 H 1.08997 * 109.50248 * 302.32265 * 3 2 1 34 34 H 1.09003 * 109.50467 * 183.21052 * 4 3 2 35 35 H 1.09000 * 109.50269 * 63.08610 * 4 3 2 36 36 H 1.08997 * 110.35294 * 37.13071 * 11 10 8 37 37 H 1.08994 * 110.35889 * 274.83865 * 11 10 8 38 38 H 1.09004 * 111.01230 * 278.31366 * 12 11 10 39 39 H 1.08996 * 111.01554 * 154.43755 * 12 11 10 40 40 H 1.08996 * 109.90403 * 62.14008 * 14 10 8 41 41 H 1.08995 * 109.90540 * 300.87384 * 14 10 8 42 42 H 1.08998 * 109.68141 * 47.62288 * 15 13 12 43 43 H 1.08997 * 109.67798 * 168.17265 * 15 13 12 44 44 H 0.96993 * 120.00324 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.62419 * 291.41292 * 25 16 15 46 46 H 1.09000 * 109.62337 * 170.84490 * 25 16 15 47 47 H 1.08997 * 109.51079 * 187.16612 * 26 25 16 48 48 H 1.09000 * 109.51133 * 67.01781 * 26 25 16 49 49 H 1.08996 * 109.54783 * 57.69897 * 28 2 1 50 50 H 1.08998 * 109.47234 * 297.55489 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3263 -0.0603 5 8 4.0174 0.5574 1.0404 6 6 3.5248 -0.7849 1.0711 7 1 3.8391 -1.3087 0.1682 8 6 4.0740 -1.4949 2.2817 9 8 4.7414 -0.8862 3.0909 10 7 3.8234 -2.8064 2.4650 11 6 3.0311 -3.6646 1.5644 12 6 3.5367 -5.1041 1.8388 13 6 3.7984 -5.0547 3.3608 14 6 4.2950 -3.6200 3.5973 15 6 4.8771 -6.0643 3.7391 16 7 4.3050 -7.4176 3.6336 17 6 4.9571 -8.4091 2.9503 18 1 4.3979 -9.2282 2.5229 19 6 6.3370 -8.3613 2.8068 20 7 7.0524 -7.5741 3.5819 21 14 7.1787 -9.4144 1.5136 22 1 7.2689 -8.6561 0.2401 23 1 8.5444 -9.7692 1.9764 24 1 6.3917 -10.6548 1.2965 25 6 3.0107 -7.6703 4.2866 26 6 2.0207 -6.5877 3.8418 27 8 2.5956 -5.2985 4.0766 28 6 1.9957 -0.7612 1.1423 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0708 31 1 -0.3634 0.4513 0.9233 32 1 1.6827 1.8826 0.9109 33 1 1.6134 1.9091 -0.8682 34 1 3.9222 2.3398 -0.0030 35 1 3.8385 0.8642 -0.9964 36 1 3.2111 -3.3912 0.5248 37 1 1.9700 -3.5841 1.8002 38 1 4.4568 -5.3064 1.2904 39 1 2.7700 -5.8403 1.5977 40 1 3.8827 -3.2334 4.5292 41 1 5.3842 -3.6060 3.6362 42 1 5.7234 -5.9695 3.0586 43 1 5.2062 -5.8837 4.7624 44 1 8.0165 -7.5403 3.4815 45 1 3.1330 -7.6321 5.3689 46 1 2.6373 -8.6511 3.9920 47 1 1.0964 -6.6835 4.4114 48 1 1.8079 -6.7034 2.7791 49 1 1.6139 -1.7815 1.1079 50 1 1.6820 -0.2855 2.0715 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972314332.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:26 Heat of formation + Delta-G solvation = -66.832221 kcal Electronic energy + Delta-G solvation = -31788.807891 eV Core-core repulsion = 27624.833138 eV Total energy + Delta-G solvation = -4163.974754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.68298 -39.67205 -38.34909 -36.29532 -35.76969 -34.50316 -32.36269 -31.35021 -30.94969 -29.57822 -29.10255 -27.45763 -26.13373 -24.79505 -24.41221 -23.59257 -22.64805 -21.41494 -20.88227 -19.43907 -18.86818 -17.40435 -17.20214 -16.64923 -16.35225 -16.06142 -15.67874 -15.34384 -15.25546 -15.09147 -14.67301 -14.42532 -14.26513 -14.19907 -13.82269 -13.60709 -13.44208 -12.94254 -12.79174 -12.71342 -12.65520 -12.41633 -12.26370 -12.11288 -11.90720 -11.70427 -11.35811 -11.14610 -11.06537 -10.97114 -10.88583 -10.73130 -10.31625 -10.29469 -9.99424 -9.96246 -9.64809 -9.58702 -9.09644 -8.82915 -8.57508 -8.52014 -6.80135 -5.88305 -3.31518 2.61351 2.67679 3.31648 3.38834 3.40637 3.41836 3.78083 4.15530 4.38290 4.42345 4.51546 4.57417 4.71336 4.79103 4.85048 4.93008 5.03338 5.10893 5.14858 5.20267 5.22641 5.33655 5.37826 5.40777 5.44881 5.49799 5.55669 5.58445 5.64790 5.74966 5.81259 5.93873 6.02651 6.11283 6.22726 6.30047 6.39428 6.46555 6.47302 6.50760 6.58445 6.74486 6.83535 7.01922 7.40438 7.57959 7.67407 7.86470 8.22802 8.27834 9.06270 9.69393 10.26507 11.19998 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016156 B = 0.003064 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.664400 B = 9135.670587 C = 9651.878709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.014 3.986 4 C 0.062 3.938 5 O -0.356 6.356 6 C 0.084 3.916 7 H 0.093 0.907 8 C 0.535 3.465 9 O -0.521 6.521 10 N -0.610 5.610 11 C 0.097 3.903 12 C -0.144 4.144 13 C 0.086 3.914 14 C 0.128 3.872 15 C 0.163 3.837 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.377 6.377 28 C 0.026 3.974 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.028 0.972 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.030 0.970 44 H 0.256 0.744 45 H 0.027 0.973 46 H 0.063 0.937 47 H 0.083 0.917 48 H 0.048 0.952 49 H 0.097 0.903 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.373 13.618 -8.532 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.114 4.114 4 C -0.015 4.015 5 O -0.273 6.273 6 C 0.022 3.978 7 H 0.110 0.890 8 C 0.321 3.679 9 O -0.396 6.396 10 N -0.346 5.346 11 C -0.026 4.026 12 C -0.182 4.182 13 C 0.044 3.956 14 C 0.006 3.994 15 C 0.037 3.963 16 N -0.316 5.316 17 C -0.383 4.383 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.018 4.018 26 C -0.032 4.032 27 O -0.296 6.296 28 C -0.102 4.102 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.045 0.955 46 H 0.081 0.919 47 H 0.101 0.899 48 H 0.066 0.934 49 H 0.116 0.884 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.594 14.011 -8.260 20.571 hybrid contribution 0.015 -0.502 -0.289 0.579 sum -12.579 13.510 -8.549 20.343 Atomic orbital electron populations 1.22394 0.86346 1.02814 1.00792 1.62218 1.08628 1.13619 1.42044 1.22866 0.96738 0.89853 1.01988 1.22753 0.92078 0.96664 0.90022 1.88128 1.69236 1.21756 1.48212 1.21851 0.92952 0.85412 0.97564 0.88985 1.19577 0.81015 0.80575 0.86759 1.90727 1.38703 1.65061 1.45069 1.48486 1.52644 1.07841 1.25598 1.22540 0.95305 0.91176 0.93541 1.23198 1.03182 0.94281 0.97511 1.22648 0.88067 0.94359 0.90515 1.21812 0.99973 0.88505 0.89151 1.21207 0.92711 0.81879 1.00511 1.44077 1.19802 1.06927 1.60817 1.19165 0.89044 1.03587 1.26543 0.91296 1.25039 0.96392 0.99238 0.98864 1.70003 1.05574 1.41591 1.37425 0.86273 0.78911 0.80011 0.81481 1.21346 1.21682 1.20424 1.21594 0.87813 0.96432 0.95929 1.23110 0.96034 0.84174 0.99852 1.87672 1.39361 1.34161 1.68443 1.22762 0.94107 1.00584 0.92791 0.90972 0.90815 0.95308 0.93642 0.89302 0.87795 0.91933 0.90768 0.91240 0.89336 0.89205 0.90538 0.89444 0.88375 0.95190 0.93377 0.95549 0.91893 0.89929 0.93364 0.88440 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.60 60.06 0.58 0.76 16 2 N -0.54 -5.06 4.98 -242.59 -1.21 -6.27 16 3 C 0.01 0.12 5.66 -3.71 -0.02 0.09 16 4 C 0.06 0.59 7.01 37.21 0.26 0.85 16 5 O -0.36 -5.01 10.01 -55.06 -0.55 -5.56 16 6 C 0.08 1.10 2.57 -27.83 -0.07 1.03 16 7 H 0.09 1.09 7.62 -51.93 -0.40 0.70 16 8 C 0.53 8.85 7.24 -10.98 -0.08 8.77 16 9 O -0.52 -10.74 16.84 -14.27 -0.24 -10.98 16 10 N -0.61 -9.55 3.33 -170.68 -0.57 -10.12 16 11 C 0.10 1.26 5.34 -2.43 -0.01 1.25 16 12 C -0.14 -2.29 5.91 -24.87 -0.15 -2.43 16 13 C 0.09 1.57 0.83 -89.73 -0.07 1.50 16 14 C 0.13 2.26 6.24 -3.33 -0.02 2.24 16 15 C 0.16 3.70 3.95 -3.85 -0.02 3.69 16 16 N -0.59 -13.97 2.95 -172.18 -0.51 -14.48 16 17 C -0.25 -6.56 9.66 -15.06 -0.15 -6.71 16 18 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.10 4.96 -17.43 -0.09 0.01 16 20 N -0.90 -25.22 11.12 55.49 0.62 -24.61 16 21 Si 0.90 20.85 29.59 -169.99 -5.03 15.82 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.11 2.15 6.72 -3.53 -0.02 2.12 16 26 C 0.05 0.76 6.76 37.31 0.25 1.01 16 27 O -0.38 -6.86 10.22 -35.23 -0.36 -7.22 16 28 C 0.03 0.29 4.78 -3.70 -0.02 0.27 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.81 7.33 -51.93 -0.38 0.43 16 37 H 0.07 0.83 7.22 -51.93 -0.37 0.45 16 38 H 0.09 1.53 7.86 -51.93 -0.41 1.12 16 39 H 0.09 1.40 5.98 -51.93 -0.31 1.09 16 40 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 41 H 0.09 1.63 7.79 -51.93 -0.40 1.23 16 42 H 0.10 2.46 5.96 -51.93 -0.31 2.15 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 47 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 48 H 0.05 0.75 6.13 -51.93 -0.32 0.44 16 49 H 0.10 0.98 5.67 -51.93 -0.29 0.69 16 50 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -32.00 380.93 -9.96 -41.96 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -8.23 Total: 1.27 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 0.37 Total: 14.44 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -1.67 Total: -55.48 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -1.15 Total: -23.75 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.00 -9.96 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972314332.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.874 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds