Wall clock time and date at job start Sat Apr 11 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46506 * 119.99801 * 2 1 4 4 C 1.34774 * 120.00205 * 179.72600 * 2 1 3 5 5 O 1.21282 * 119.99562 * 0.02562 * 4 2 1 6 6 C 1.50695 * 120.00432 * 179.97438 * 4 2 1 7 7 H 1.09000 * 110.55059 * 55.69536 * 6 4 2 8 8 C 1.54998 * 110.61744 * 292.82626 * 6 4 2 9 9 C 1.54986 * 102.00914 * 204.59533 * 8 6 4 10 10 C 1.54099 * 104.25463 * 20.66304 * 9 8 6 11 11 H 1.09005 * 110.00316 * 242.67525 * 10 9 8 12 12 C 1.50703 * 109.87931 * 121.59400 * 10 9 8 13 13 O 1.21280 * 119.99520 * 245.71810 * 12 10 9 14 14 N 1.34778 * 120.00072 * 65.71316 * 12 10 9 15 15 C 1.47419 * 125.64820 * 359.69619 * 14 12 10 16 16 C 1.55128 * 104.72381 * 155.81615 * 15 14 12 17 17 C 1.55155 * 101.48393 * 37.29564 * 16 15 14 18 18 H 1.08996 * 110.72373 * 82.69678 * 17 16 15 19 19 N 1.46500 * 110.87120 * 205.90098 * 17 16 15 20 20 C 1.46501 * 120.00137 * 53.60553 * 19 17 16 21 21 C 1.36942 * 120.00013 * 233.60598 * 19 17 16 22 22 H 1.08000 * 119.99720 * 21.72332 * 21 19 17 23 23 C 1.38816 * 120.00174 * 201.71965 * 21 19 17 24 24 N 1.31617 * 119.99344 * 13.65310 * 23 21 19 25 25 Si 1.86796 * 119.99724 * 193.65435 * 23 21 19 26 26 H 1.48495 * 109.47363 * 60.00373 * 25 23 21 27 27 H 1.48500 * 109.46515 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47440 * 299.99789 * 25 23 21 29 29 C 1.47024 * 125.64687 * 180.02562 * 14 12 10 30 30 O 1.43743 * 107.29479 * 2.16868 * 10 9 8 31 31 H 1.09000 * 109.46859 * 270.27889 * 1 2 3 32 32 H 1.09004 * 109.46772 * 30.27497 * 1 2 3 33 33 H 1.08995 * 109.47165 * 150.26963 * 1 2 3 34 34 H 1.09002 * 109.46876 * 179.72560 * 3 2 1 35 35 H 1.09004 * 109.47154 * 299.72342 * 3 2 1 36 36 H 1.08995 * 109.47024 * 59.72847 * 3 2 1 37 37 H 1.09004 * 110.90521 * 322.66373 * 8 6 4 38 38 H 1.08998 * 110.91139 * 86.27788 * 8 6 4 39 39 H 1.09008 * 110.33845 * 262.02170 * 9 8 6 40 40 H 1.09000 * 110.57467 * 139.42351 * 9 8 6 41 41 H 1.09006 * 110.36923 * 274.74210 * 15 14 12 42 42 H 1.09007 * 110.37111 * 37.06379 * 15 14 12 43 43 H 1.09000 * 111.19031 * 279.18924 * 16 15 14 44 44 H 1.09005 * 110.94123 * 155.28661 * 16 15 14 45 45 H 1.09006 * 109.47050 * 94.46064 * 20 19 17 46 46 H 1.09000 * 109.47459 * 214.45937 * 20 19 17 47 47 H 1.08999 * 109.47206 * 334.46422 * 20 19 17 48 48 H 0.97009 * 119.99431 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.88083 * 300.44197 * 29 14 12 50 50 H 1.09001 * 109.87921 * 61.45419 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1671 0.0056 5 8 1.5325 -2.2174 0.0101 6 6 3.6459 -1.1672 0.0050 7 1 4.0289 -0.5878 0.8451 8 6 4.1912 -0.6111 -1.3351 9 6 5.5948 -1.2643 -1.4080 10 6 5.4996 -2.4751 -0.4595 11 1 6.2015 -2.3580 0.3662 12 6 5.8043 -3.7430 -1.2149 13 8 4.9387 -4.5778 -1.3724 14 7 7.0386 -3.9492 -1.7154 15 6 8.1774 -3.0199 -1.6034 16 6 9.4344 -3.9174 -1.7474 17 6 8.9623 -4.9416 -2.8130 18 1 9.0766 -4.5336 -3.8172 19 7 9.6927 -6.2048 -2.6825 20 6 9.7346 -6.8968 -1.3919 21 6 10.3362 -6.7388 -3.7669 22 1 10.6123 -6.1053 -4.5969 23 6 10.6337 -8.0943 -3.7994 24 7 10.0733 -8.9119 -2.9335 25 14 11.8294 -8.7578 -5.0720 26 1 13.1514 -8.1045 -4.8972 27 1 11.9757 -10.2250 -4.8960 28 1 11.3120 -8.4714 -6.4341 29 6 7.4703 -5.1353 -2.4693 30 8 4.1543 -2.5179 0.0450 31 1 -0.3633 0.0050 1.0277 32 1 -0.3633 0.8876 -0.5181 33 1 -0.3633 -0.8923 -0.5096 34 1 3.2692 1.0696 0.0049 35 1 1.9379 1.8382 -0.8925 36 1 1.9305 1.8424 0.8875 37 1 3.5700 -0.9327 -2.1711 38 1 4.2664 0.4758 -1.3035 39 1 6.3562 -0.5660 -1.0601 40 1 5.8125 -1.5921 -2.4245 41 1 8.1433 -2.2798 -2.4030 42 1 8.1720 -2.5286 -0.6303 43 1 9.6737 -4.4141 -0.8071 44 1 10.2855 -3.3408 -2.1098 45 1 8.9408 -7.6428 -1.3537 46 1 10.7006 -7.3878 -1.2741 47 1 9.5936 -6.1747 -0.5877 48 1 10.2809 -9.8592 -2.9565 49 1 7.3437 -6.0291 -1.8586 50 1 6.8853 -5.2259 -3.3846 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972322626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:32 Heat of formation + Delta-G solvation = -60.008459 kcal Electronic energy + Delta-G solvation = -30531.569005 eV Core-core repulsion = 26367.890152 eV Total energy + Delta-G solvation = -4163.678853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.98028 -39.81673 -38.50141 -37.09733 -35.93455 -34.81857 -32.64362 -31.79844 -30.80026 -29.67138 -28.44983 -27.75520 -26.63678 -26.03375 -24.48315 -23.05195 -22.56307 -21.98096 -19.92139 -19.42448 -19.09803 -17.86076 -17.13206 -17.02174 -16.76597 -16.35414 -15.94080 -15.77743 -15.47357 -15.03093 -14.61790 -14.23146 -14.17627 -13.81076 -13.43035 -13.37505 -13.28296 -13.16725 -12.98809 -12.75906 -12.60438 -12.46503 -12.31589 -12.15652 -12.02491 -11.87142 -11.70366 -11.51501 -11.31211 -10.92406 -10.80473 -10.59207 -10.49659 -10.43717 -10.30748 -9.93741 -9.86736 -9.83034 -9.32887 -9.12717 -8.57542 -8.29668 -6.83661 -5.76257 -3.23139 2.24704 2.33803 2.80097 3.00831 3.37577 3.42966 3.43993 3.67377 3.94106 4.12980 4.34334 4.44833 4.52015 4.54774 4.61177 4.67180 4.82269 4.91679 4.96101 4.98024 5.05183 5.16187 5.18009 5.25706 5.27847 5.30908 5.44520 5.45155 5.50554 5.57623 5.63259 5.75852 5.87021 5.96414 5.97941 6.32217 6.33590 6.36700 6.55200 6.69447 6.83521 6.86196 6.89092 7.34408 7.71177 7.77933 7.79474 7.84230 8.33700 8.43384 9.17937 9.80613 10.29039 11.28287 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031282 B = 0.002131 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.882112 B =13135.732183 C =13488.268065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.623 5.623 3 C 0.069 3.931 4 C 0.517 3.483 5 O -0.506 6.506 6 C 0.057 3.943 7 H 0.099 0.901 8 C -0.144 4.144 9 C -0.143 4.143 10 C 0.063 3.937 11 H 0.098 0.902 12 C 0.521 3.479 13 O -0.518 6.518 14 N -0.612 5.612 15 C 0.100 3.900 16 C -0.154 4.154 17 C 0.174 3.826 18 H 0.078 0.922 19 N -0.585 5.585 20 C 0.159 3.841 21 C -0.263 4.263 22 H 0.071 0.929 23 C 0.004 3.996 24 N -0.903 5.903 25 Si 0.908 3.092 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.283 1.283 29 C 0.088 3.912 30 O -0.316 6.316 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.031 0.969 46 H 0.045 0.955 47 H 0.002 0.998 48 H 0.255 0.745 49 H 0.073 0.927 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.560 27.073 6.755 29.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.360 5.360 3 C -0.074 4.074 4 C 0.303 3.697 5 O -0.378 6.378 6 C -0.005 4.005 7 H 0.116 0.884 8 C -0.182 4.182 9 C -0.181 4.181 10 C 0.001 3.999 11 H 0.115 0.885 12 C 0.307 3.693 13 O -0.392 6.392 14 N -0.348 5.348 15 C -0.024 4.024 16 C -0.193 4.193 17 C 0.063 3.937 18 H 0.096 0.904 19 N -0.306 5.306 20 C 0.015 3.985 21 C -0.392 4.392 22 H 0.088 0.912 23 C -0.195 4.195 24 N -0.547 5.547 25 Si 0.738 3.262 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.209 1.209 29 C -0.037 4.037 30 O -0.233 6.233 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.021 0.979 48 H 0.065 0.935 49 H 0.091 0.909 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.523 25.585 6.798 28.872 hybrid contribution 0.702 -0.182 -0.629 0.960 sum -10.821 25.403 6.169 28.293 Atomic orbital electron populations 1.21632 0.78591 1.03324 1.02023 1.47632 1.07237 1.05989 1.75150 1.22041 0.97615 0.85383 1.02379 1.20234 0.89107 0.83590 0.76731 1.90784 1.69550 1.30765 1.46737 1.23007 0.92010 0.86323 0.99119 0.88365 1.23280 0.96598 1.01247 0.97033 1.22978 0.97681 0.95977 1.01454 1.22669 0.86343 0.94217 0.96667 0.88486 1.19921 0.81472 0.87889 0.80050 1.90763 1.45249 1.45515 1.57707 1.48503 1.09396 1.21747 1.55196 1.22421 0.86426 0.92828 1.00704 1.23384 0.95658 0.97977 1.02328 1.21341 0.87717 0.88012 0.96644 0.90367 1.43933 1.57096 1.21738 1.07790 1.20818 1.01129 0.92964 0.83579 1.19175 1.30672 0.91172 0.98208 0.91166 1.25054 0.99988 0.95911 0.98559 1.70080 1.43482 1.03130 1.38026 0.86289 0.81102 0.77758 0.81083 1.21029 1.21630 1.20875 1.22973 0.98108 0.87288 0.95300 1.89173 1.26278 1.23913 1.83887 0.92609 0.91063 0.90338 0.89943 0.91604 0.91736 0.89568 0.88640 0.88942 0.89202 0.91509 0.91454 0.90284 0.90359 0.95116 0.93593 0.97922 0.93516 0.90873 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.48 59.85 0.63 1.22 16 2 N -0.62 -4.98 3.27 -189.51 -0.62 -5.60 16 3 C 0.07 0.24 10.06 59.85 0.60 0.84 16 4 C 0.52 6.34 7.10 -10.99 -0.08 6.26 16 5 O -0.51 -8.97 16.14 -13.51 -0.22 -9.19 16 6 C 0.06 0.58 2.75 -26.83 -0.07 0.51 16 7 H 0.10 0.67 7.58 -51.93 -0.39 0.28 16 8 C -0.14 -1.08 5.86 -24.63 -0.14 -1.22 16 9 C -0.14 -1.18 5.71 -25.11 -0.14 -1.32 16 10 C 0.06 0.79 3.16 -27.31 -0.09 0.70 16 11 H 0.10 0.98 7.66 -51.93 -0.40 0.58 16 12 C 0.52 9.13 7.01 -10.98 -0.08 9.05 16 13 O -0.52 -11.94 16.85 -14.01 -0.24 -12.18 16 14 N -0.61 -9.94 3.32 -170.38 -0.57 -10.50 16 15 C 0.10 1.19 5.90 -2.41 -0.01 1.17 16 16 C -0.15 -2.28 6.61 -24.46 -0.16 -2.44 16 17 C 0.17 3.34 3.43 -66.10 -0.23 3.12 16 18 H 0.08 1.47 7.92 -51.93 -0.41 1.06 16 19 N -0.59 -14.17 2.94 -171.38 -0.50 -14.67 16 20 C 0.16 3.87 7.82 59.85 0.47 4.34 16 21 C -0.26 -7.01 9.63 -15.06 -0.14 -7.16 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 23 C 0.00 0.11 5.08 -17.43 -0.09 0.02 16 24 N -0.90 -26.29 10.67 55.49 0.59 -25.69 16 25 Si 0.91 21.57 29.58 -169.99 -5.03 16.54 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 29 C 0.09 1.73 6.51 -3.06 -0.02 1.71 16 30 O -0.32 -4.90 10.02 -64.30 -0.64 -5.55 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 33 H 0.08 0.70 7.42 -51.93 -0.39 0.32 16 34 H 0.08 0.20 4.12 -51.93 -0.21 -0.01 16 35 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 36 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 37 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 38 H 0.10 0.34 6.38 -51.93 -0.33 0.01 16 39 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.09 0.83 7.67 -51.93 -0.40 0.43 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.63 7.35 -51.92 -0.38 0.24 16 43 H 0.08 1.27 6.07 -51.93 -0.32 0.95 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.03 0.83 7.33 -51.93 -0.38 0.45 16 46 H 0.05 1.19 7.23 -51.93 -0.38 0.82 16 47 H 0.00 0.05 6.04 -51.93 -0.31 -0.26 16 48 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.07 1.69 7.12 -51.93 -0.37 1.32 16 50 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 390.37 15.07 5.88 5.88 Total: -1.00 -38.55 390.37 -8.91 -47.46 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -8.01 Total: -3.31 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 0.44 Total: 16.81 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -1.10 Total: -56.47 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -1.10 Total: -26.92 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.55 -8.91 -47.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972322626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.550 kcal (2) G-P(sol) polarization free energy of solvation -38.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds