Wall clock time and date at job start Sat Apr 11 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46506 * 119.99801 * 2 1 4 4 C 1.34774 * 120.00205 * 179.72600 * 2 1 3 5 5 O 1.21282 * 119.99562 * 0.02562 * 4 2 1 6 6 C 1.50695 * 120.00432 * 179.97438 * 4 2 1 7 7 H 1.09000 * 110.55059 * 55.69536 * 6 4 2 8 8 C 1.54998 * 110.61744 * 292.82626 * 6 4 2 9 9 C 1.54986 * 102.00914 * 204.59533 * 8 6 4 10 10 C 1.54099 * 104.25463 * 20.66304 * 9 8 6 11 11 H 1.09005 * 110.00316 * 242.67525 * 10 9 8 12 12 C 1.50703 * 109.87931 * 121.59400 * 10 9 8 13 13 O 1.21280 * 119.99520 * 245.71810 * 12 10 9 14 14 N 1.34778 * 120.00072 * 65.71316 * 12 10 9 15 15 C 1.47419 * 125.64820 * 359.69619 * 14 12 10 16 16 C 1.55128 * 104.72381 * 155.81615 * 15 14 12 17 17 C 1.55155 * 101.48393 * 37.29564 * 16 15 14 18 18 H 1.08996 * 110.72373 * 82.69678 * 17 16 15 19 19 N 1.46500 * 110.87120 * 205.90098 * 17 16 15 20 20 C 1.46501 * 120.00137 * 53.60553 * 19 17 16 21 21 C 1.36942 * 120.00013 * 233.60598 * 19 17 16 22 22 H 1.08000 * 119.99720 * 21.72332 * 21 19 17 23 23 C 1.38816 * 120.00174 * 201.71965 * 21 19 17 24 24 N 1.31617 * 119.99344 * 13.65310 * 23 21 19 25 25 Si 1.86796 * 119.99724 * 193.65435 * 23 21 19 26 26 H 1.48495 * 109.47363 * 60.00373 * 25 23 21 27 27 H 1.48500 * 109.46515 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47440 * 299.99789 * 25 23 21 29 29 C 1.47024 * 125.64687 * 180.02562 * 14 12 10 30 30 O 1.43743 * 107.29479 * 2.16868 * 10 9 8 31 31 H 1.09000 * 109.46859 * 270.27889 * 1 2 3 32 32 H 1.09004 * 109.46772 * 30.27497 * 1 2 3 33 33 H 1.08995 * 109.47165 * 150.26963 * 1 2 3 34 34 H 1.09002 * 109.46876 * 179.72560 * 3 2 1 35 35 H 1.09004 * 109.47154 * 299.72342 * 3 2 1 36 36 H 1.08995 * 109.47024 * 59.72847 * 3 2 1 37 37 H 1.09004 * 110.90521 * 322.66373 * 8 6 4 38 38 H 1.08998 * 110.91139 * 86.27788 * 8 6 4 39 39 H 1.09008 * 110.33845 * 262.02170 * 9 8 6 40 40 H 1.09000 * 110.57467 * 139.42351 * 9 8 6 41 41 H 1.09006 * 110.36923 * 274.74210 * 15 14 12 42 42 H 1.09007 * 110.37111 * 37.06379 * 15 14 12 43 43 H 1.09000 * 111.19031 * 279.18924 * 16 15 14 44 44 H 1.09005 * 110.94123 * 155.28661 * 16 15 14 45 45 H 1.09006 * 109.47050 * 94.46064 * 20 19 17 46 46 H 1.09000 * 109.47459 * 214.45937 * 20 19 17 47 47 H 1.08999 * 109.47206 * 334.46422 * 20 19 17 48 48 H 0.97009 * 119.99431 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.88083 * 300.44197 * 29 14 12 50 50 H 1.09001 * 109.87921 * 61.45419 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1671 0.0056 5 8 1.5325 -2.2174 0.0101 6 6 3.6459 -1.1672 0.0050 7 1 4.0289 -0.5878 0.8451 8 6 4.1912 -0.6111 -1.3351 9 6 5.5948 -1.2643 -1.4080 10 6 5.4996 -2.4751 -0.4595 11 1 6.2015 -2.3580 0.3662 12 6 5.8043 -3.7430 -1.2149 13 8 4.9387 -4.5778 -1.3724 14 7 7.0386 -3.9492 -1.7154 15 6 8.1774 -3.0199 -1.6034 16 6 9.4344 -3.9174 -1.7474 17 6 8.9623 -4.9416 -2.8130 18 1 9.0766 -4.5336 -3.8172 19 7 9.6927 -6.2048 -2.6825 20 6 9.7346 -6.8968 -1.3919 21 6 10.3362 -6.7388 -3.7669 22 1 10.6123 -6.1053 -4.5969 23 6 10.6337 -8.0943 -3.7994 24 7 10.0733 -8.9119 -2.9335 25 14 11.8294 -8.7578 -5.0720 26 1 13.1514 -8.1045 -4.8972 27 1 11.9757 -10.2250 -4.8960 28 1 11.3120 -8.4714 -6.4341 29 6 7.4703 -5.1353 -2.4693 30 8 4.1543 -2.5179 0.0450 31 1 -0.3633 0.0050 1.0277 32 1 -0.3633 0.8876 -0.5181 33 1 -0.3633 -0.8923 -0.5096 34 1 3.2692 1.0696 0.0049 35 1 1.9379 1.8382 -0.8925 36 1 1.9305 1.8424 0.8875 37 1 3.5700 -0.9327 -2.1711 38 1 4.2664 0.4758 -1.3035 39 1 6.3562 -0.5660 -1.0601 40 1 5.8125 -1.5921 -2.4245 41 1 8.1433 -2.2798 -2.4030 42 1 8.1720 -2.5286 -0.6303 43 1 9.6737 -4.4141 -0.8071 44 1 10.2855 -3.3408 -2.1098 45 1 8.9408 -7.6428 -1.3537 46 1 10.7006 -7.3878 -1.2741 47 1 9.5936 -6.1747 -0.5877 48 1 10.2809 -9.8592 -2.9565 49 1 7.3437 -6.0291 -1.8586 50 1 6.8853 -5.2259 -3.3846 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972322626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:31 Heat of formation + Delta-G solvation = -88.685085 kcal Electronic energy + Delta-G solvation = -30532.812517 eV Core-core repulsion = 26367.890152 eV Total energy + Delta-G solvation = -4164.922365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.89995 -40.95173 -39.58688 -38.55239 -36.70236 -36.57330 -33.75005 -33.16916 -31.95024 -31.01251 -29.49352 -28.60549 -28.07713 -27.37110 -25.63012 -24.39868 -23.78829 -22.79681 -20.97344 -20.68735 -20.30432 -18.97282 -18.72847 -17.97167 -17.79935 -17.26178 -17.19965 -16.89910 -16.64434 -16.26764 -15.90964 -15.43721 -15.05184 -15.00851 -14.78820 -14.66996 -14.44546 -14.24204 -14.09144 -13.70705 -13.48440 -13.39819 -13.36526 -13.19693 -13.12833 -12.97508 -12.79493 -12.70909 -12.47546 -12.40795 -12.33695 -12.21804 -12.12036 -11.95392 -11.80325 -11.45499 -11.37980 -10.87218 -10.63352 -10.53700 -9.75653 -9.68624 -8.84485 -7.84324 -5.33684 1.41044 1.47418 1.49203 1.50632 1.56423 1.58888 1.95904 2.50869 2.89190 3.20194 3.28324 3.38139 3.58154 3.67235 3.73438 3.84782 3.93458 4.01060 4.06326 4.23409 4.28219 4.33404 4.39511 4.40895 4.48366 4.50979 4.55970 4.68238 4.75016 4.78926 4.80238 4.88776 4.90065 4.91841 5.01815 5.04584 5.05538 5.19348 5.20640 5.32666 5.40928 5.45909 5.63333 5.67271 5.68983 6.24730 6.29720 6.53113 7.05932 7.09691 7.12759 7.83065 8.27524 9.18999 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031282 B = 0.002131 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.882112 B =13135.732183 C =13488.268065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.614 5.614 3 C 0.058 3.942 4 C 0.503 3.497 5 O -0.585 6.585 6 C 0.052 3.948 7 H 0.144 0.856 8 C -0.134 4.134 9 C -0.135 4.135 10 C 0.067 3.933 11 H 0.134 0.866 12 C 0.508 3.492 13 O -0.594 6.594 14 N -0.607 5.607 15 C 0.102 3.898 16 C -0.140 4.140 17 C 0.166 3.834 18 H 0.087 0.913 19 N -0.602 5.602 20 C 0.179 3.821 21 C -0.265 4.265 22 H 0.083 0.917 23 C -0.059 4.059 24 N -0.943 5.943 25 Si 0.975 3.025 26 H -0.272 1.272 27 H -0.301 1.301 28 H -0.275 1.275 29 C 0.097 3.903 30 O -0.372 6.372 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.107 0.893 45 H -0.011 1.011 46 H 0.021 0.979 47 H 0.034 0.966 48 H 0.247 0.753 49 H 0.026 0.974 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.519 33.321 6.948 35.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.348 5.348 3 C -0.083 4.083 4 C 0.291 3.709 5 O -0.464 6.464 6 C -0.008 4.008 7 H 0.161 0.839 8 C -0.172 4.172 9 C -0.172 4.172 10 C 0.006 3.994 11 H 0.151 0.849 12 C 0.298 3.702 13 O -0.474 6.474 14 N -0.342 5.342 15 C -0.019 4.019 16 C -0.180 4.180 17 C 0.057 3.943 18 H 0.105 0.895 19 N -0.323 5.323 20 C 0.035 3.965 21 C -0.395 4.395 22 H 0.100 0.900 23 C -0.254 4.254 24 N -0.589 5.589 25 Si 0.802 3.198 26 H -0.197 1.197 27 H -0.227 1.227 28 H -0.201 1.201 29 C -0.029 4.029 30 O -0.290 6.290 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.130 0.870 43 H 0.084 0.916 44 H 0.126 0.874 45 H 0.007 0.993 46 H 0.040 0.960 47 H 0.052 0.948 48 H 0.056 0.944 49 H 0.045 0.955 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.447 31.998 6.986 34.087 hybrid contribution -0.051 -2.012 -0.683 2.125 sum -9.499 29.986 6.303 32.080 Atomic orbital electron populations 1.21748 0.78457 1.03459 1.02475 1.47812 1.07746 1.06544 1.72724 1.22431 0.98222 0.83226 1.04399 1.20930 0.90448 0.83672 0.75876 1.90746 1.71102 1.33705 1.50835 1.23408 0.90349 0.84781 1.02292 0.83896 1.23343 0.95441 1.04153 0.94255 1.23123 0.99506 0.94734 0.99885 1.22897 0.86081 0.92453 0.97984 0.84860 1.21179 0.80634 0.89101 0.79312 1.90724 1.47643 1.48465 1.60570 1.48546 1.10532 1.21135 1.53962 1.22808 0.82450 0.91845 1.04817 1.23272 0.98098 0.96957 0.99633 1.21601 0.86584 0.87053 0.99020 0.89536 1.44151 1.57911 1.23164 1.07059 1.20456 0.98166 0.92775 0.85150 1.19634 1.29706 0.91394 0.98729 0.89963 1.25912 1.02109 0.96490 1.00882 1.70288 1.45445 1.02861 1.40326 0.85228 0.79332 0.76328 0.78863 1.19743 1.22727 1.20071 1.22543 0.98704 0.87654 0.94046 1.89139 1.27945 1.27622 1.84282 0.92097 0.87483 0.93516 0.88155 0.89497 0.89797 0.92444 0.83276 0.83202 0.90337 0.87602 0.86953 0.91552 0.87442 0.99262 0.95990 0.94757 0.94397 0.95523 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.48 127.77 1.34 2.40 16 2 N -0.61 -8.67 3.27 -871.87 -2.85 -11.53 16 3 C 0.06 0.13 10.06 127.77 1.29 1.41 16 4 C 0.50 12.27 7.10 87.66 0.62 12.89 16 5 O -0.58 -22.49 16.14 15.19 0.25 -22.24 16 6 C 0.05 0.93 2.75 30.53 0.08 1.01 16 7 H 0.14 1.20 7.58 -2.39 -0.02 1.19 16 8 C -0.13 -1.44 5.86 31.96 0.19 -1.26 16 9 C -0.13 -1.50 5.71 31.65 0.18 -1.32 16 10 C 0.07 1.49 3.16 30.22 0.10 1.59 16 11 H 0.13 1.99 7.66 -2.38 -0.02 1.97 16 12 C 0.51 17.91 7.01 87.66 0.61 18.52 16 13 O -0.59 -29.49 16.85 15.68 0.26 -29.22 16 14 N -0.61 -19.05 3.32 -811.34 -2.70 -21.75 16 15 C 0.10 1.91 5.90 86.93 0.51 2.42 16 16 C -0.14 -3.64 6.61 32.06 0.21 -3.43 16 17 C 0.17 6.28 3.43 46.18 0.16 6.44 16 18 H 0.09 3.12 7.92 -2.39 -0.02 3.10 16 19 N -0.60 -29.60 2.94 -696.14 -2.04 -31.64 16 20 C 0.18 9.09 7.82 127.77 1.00 10.09 16 21 C -0.26 -14.23 9.63 84.03 0.81 -13.42 16 22 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 23 C -0.06 -3.34 5.08 84.86 0.43 -2.91 16 24 N -0.94 -57.57 10.67 21.65 0.23 -57.34 16 25 Si 0.97 45.11 29.58 68.60 2.03 47.14 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 28 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 29 C 0.10 3.96 6.51 86.73 0.56 4.53 16 30 O -0.37 -11.42 10.02 -121.19 -1.21 -12.64 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 0.60 8.07 -2.38 -0.02 0.58 16 33 H 0.05 0.92 7.42 -2.39 -0.02 0.90 16 34 H 0.10 -0.15 4.12 -2.39 -0.01 -0.16 16 35 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.08 -0.06 8.14 -2.39 -0.02 -0.07 16 37 H 0.06 0.97 8.05 -2.38 -0.02 0.95 16 38 H 0.15 -0.04 6.38 -2.39 -0.02 -0.05 16 39 H 0.15 0.04 8.14 -2.38 -0.02 0.02 16 40 H 0.08 1.11 7.67 -2.39 -0.02 1.09 16 41 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.11 1.24 7.35 -2.38 -0.02 1.22 16 43 H 0.07 1.92 6.07 -2.39 -0.01 1.91 16 44 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 45 H -0.01 -0.64 7.33 -2.38 -0.02 -0.66 16 46 H 0.02 1.17 7.23 -2.39 -0.02 1.16 16 47 H 0.03 1.48 6.04 -2.39 -0.01 1.46 16 48 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 49 H 0.03 1.33 7.12 -2.39 -0.02 1.31 16 50 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -99.85 390.37 2.99 -96.85 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 0.94 Total: 3.41 kcal Atomic # 6 Polarization: 30.86 SS G_CDS: 8.10 Total: 38.95 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -7.36 Total: -122.26 kcal Atomic # 8 Polarization: -63.40 SS G_CDS: -0.70 Total: -64.10 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -99.85 2.99 -96.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972322626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.169 kcal (2) G-P(sol) polarization free energy of solvation -99.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds