Wall clock time and date at job start Sat Apr 11 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47011 * 111.00410 * 2 1 4 4 C 1.53092 * 109.26081 * 177.60348 * 3 2 1 5 5 O 1.43024 * 109.25390 * 56.84831 * 4 3 2 6 6 C 1.43018 * 113.77685 * 301.34982 * 5 4 3 7 7 C 1.47016 * 110.99931 * 236.36137 * 2 1 3 8 8 H 1.08990 * 109.50706 * 62.41807 * 7 2 1 9 9 C 1.50705 * 109.50744 * 302.32694 * 7 2 1 10 10 O 1.21273 * 120.00100 * 331.12627 * 9 7 2 11 11 N 1.34772 * 119.99609 * 151.11975 * 9 7 2 12 12 C 1.47089 * 125.63355 * 355.80897 * 11 9 7 13 13 C 1.54462 * 107.29674 * 180.73405 * 12 11 9 14 14 C 1.54367 * 102.87558 * 21.49020 * 13 12 11 15 15 C 1.47572 * 125.62893 * 175.49502 * 11 9 7 16 16 C 1.52361 * 110.42158 * 207.61836 * 14 13 12 17 17 N 1.47335 * 108.41303 * 186.40585 * 16 14 13 18 18 C 1.36933 * 121.08107 * 229.14934 * 17 16 14 19 19 H 1.08001 * 119.99581 * 149.72481 * 18 17 16 20 20 C 1.38814 * 120.00015 * 329.72311 * 18 17 16 21 21 N 1.31620 * 120.00024 * 347.12603 * 20 18 17 22 22 Si 1.86796 * 119.99774 * 167.12600 * 20 18 17 23 23 H 1.48500 * 109.47141 * 90.00208 * 22 20 18 24 24 H 1.48497 * 109.47174 * 210.00233 * 22 20 18 25 25 H 1.48506 * 109.47236 * 329.99994 * 22 20 18 26 26 C 1.47168 * 117.83488 * 49.16815 * 17 16 14 27 27 C 1.53275 * 108.57329 * 308.76264 * 26 17 16 28 28 O 1.41881 * 110.74800 * 83.66095 * 14 13 12 29 29 H 1.08999 * 109.47712 * 189.37965 * 1 2 3 30 30 H 1.09003 * 109.47420 * 309.38357 * 1 2 3 31 31 H 1.09003 * 109.46886 * 69.38211 * 1 2 3 32 32 H 1.09002 * 109.50274 * 297.53847 * 3 2 1 33 33 H 1.09001 * 109.50846 * 57.62418 * 3 2 1 34 34 H 1.08995 * 109.50651 * 176.77779 * 4 3 2 35 35 H 1.08993 * 109.50867 * 296.87290 * 4 3 2 36 36 H 1.08996 * 109.47183 * 298.69166 * 6 5 4 37 37 H 1.08999 * 109.54318 * 178.55907 * 6 5 4 38 38 H 1.08993 * 109.87553 * 300.15558 * 12 11 9 39 39 H 1.08997 * 109.87629 * 61.30959 * 12 11 9 40 40 H 1.08997 * 110.73629 * 139.83823 * 13 12 11 41 41 H 1.08996 * 110.73128 * 263.14694 * 13 12 11 42 42 H 1.09004 * 110.37508 * 275.77112 * 15 11 9 43 43 H 1.08994 * 110.37886 * 38.11562 * 15 11 9 44 44 H 1.09002 * 109.67544 * 306.13532 * 16 14 13 45 45 H 1.08995 * 109.68002 * 66.67225 * 16 14 13 46 46 H 0.96995 * 119.99744 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.61904 * 68.48753 * 26 17 16 48 48 H 1.09000 * 109.62096 * 189.03329 * 26 17 16 49 49 H 1.08999 * 109.51287 * 172.93093 * 27 26 17 50 50 H 1.08994 * 109.51382 * 293.03254 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3263 0.0604 5 8 4.0175 0.5572 -1.0402 6 6 3.5250 -0.7852 -1.0719 7 6 1.9958 -0.7603 -1.1427 8 1 1.6822 -0.2848 -2.0719 9 6 1.4670 -2.1707 -1.0955 10 8 1.1903 -2.6793 -0.0299 11 7 1.3014 -2.8668 -2.2376 12 6 1.5131 -2.3460 -3.5969 13 6 1.1861 -3.4893 -4.5828 14 6 0.2846 -4.4199 -3.7436 15 6 0.8842 -4.2792 -2.3308 16 6 0.4027 -5.8578 -4.2333 17 7 -0.5846 -6.6782 -3.5103 18 6 -0.2242 -7.8585 -2.9169 19 1 -0.7424 -8.1984 -2.0323 20 6 0.8070 -8.6180 -3.4522 21 7 1.2678 -8.3474 -4.6550 22 14 1.5407 -10.0242 -2.4654 23 1 0.7986 -11.2761 -2.7606 24 1 2.9686 -10.1962 -2.8353 25 1 1.4383 -9.7180 -1.0159 26 6 -1.9709 -6.1882 -3.4471 27 6 -1.9538 -4.7376 -2.9523 28 8 -1.0614 -3.9719 -3.7684 29 1 -0.3634 -1.0139 0.1675 30 1 -0.3634 0.6521 0.7943 31 1 -0.3633 0.3619 -0.9619 32 1 1.6829 1.8824 -0.9111 33 1 1.6128 1.9094 0.8677 34 1 3.9222 2.3397 0.0030 35 1 3.8385 0.8650 0.9968 36 1 3.8392 -1.3088 -0.1690 37 1 3.9216 -1.2985 -1.9478 38 1 0.8497 -1.5002 -3.7771 39 1 2.5515 -2.0377 -3.7181 40 1 0.6466 -3.1086 -5.4500 41 1 2.0954 -4.0064 -4.8891 42 1 1.7453 -4.9377 -2.2166 43 1 0.1314 -4.5032 -1.5751 44 1 0.2007 -5.8988 -5.3036 45 1 1.4070 -6.2319 -4.0344 46 1 1.9886 -8.8779 -5.0289 47 1 -2.4199 -6.2312 -4.4394 48 1 -2.5456 -6.8041 -2.7554 49 1 -2.9579 -4.3185 -3.0186 50 1 -1.6155 -4.7101 -1.9166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972348402.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:37 Heat of formation + Delta-G solvation = -68.425904 kcal Electronic energy + Delta-G solvation = -32176.583043 eV Core-core repulsion = 28012.539182 eV Total energy + Delta-G solvation = -4164.043861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.74687 -39.67077 -38.26781 -36.26403 -35.64988 -34.46987 -32.27242 -31.38865 -31.16093 -29.17712 -29.04770 -27.63585 -26.04616 -24.64466 -24.40213 -23.30507 -23.14478 -21.18912 -21.03602 -19.15179 -18.81631 -17.49398 -16.99611 -16.75161 -16.56408 -16.10400 -15.59052 -15.37140 -15.07899 -14.86980 -14.82858 -14.38698 -14.20732 -14.03260 -13.68057 -13.59477 -13.51199 -13.22417 -12.86400 -12.73998 -12.48104 -12.36558 -12.11919 -11.89639 -11.82345 -11.49570 -11.37493 -11.12506 -11.08087 -10.95323 -10.86644 -10.77515 -10.49036 -10.31442 -10.12936 -10.01852 -9.57534 -9.54732 -9.08473 -8.63436 -8.58886 -8.40128 -6.72933 -5.88527 -3.35541 2.62033 2.92102 3.32916 3.40286 3.43153 3.46646 3.69313 4.16546 4.39371 4.46377 4.53249 4.65988 4.75217 4.81707 4.85229 4.92263 5.00438 5.20139 5.26680 5.29002 5.31220 5.32017 5.36503 5.40465 5.46994 5.51918 5.62777 5.66222 5.79239 5.85125 5.86020 5.99400 6.04109 6.14267 6.21204 6.22521 6.41359 6.46189 6.57207 6.61425 6.66712 6.76255 6.79087 6.99476 7.35840 7.64839 7.70452 7.87654 8.28311 8.31298 9.07878 9.69195 10.28628 11.20068 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.003286 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.969589 B = 8519.523665 C = 8998.947292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.520 5.520 3 C 0.019 3.981 4 C 0.060 3.940 5 O -0.379 6.379 6 C 0.078 3.922 7 C 0.037 3.963 8 H 0.069 0.931 9 C 0.532 3.468 10 O -0.521 6.521 11 N -0.612 5.612 12 C 0.103 3.897 13 C -0.116 4.116 14 C 0.085 3.915 15 C 0.096 3.904 16 C 0.166 3.834 17 N -0.594 5.594 18 C -0.255 4.255 19 H 0.067 0.933 20 C 0.007 3.993 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.288 1.288 25 H -0.278 1.278 26 C 0.110 3.890 27 C 0.045 3.955 28 O -0.374 6.374 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.025 0.975 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.035 0.965 45 H 0.092 0.908 46 H 0.255 0.745 47 H 0.027 0.973 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.973 19.376 3.535 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.245 5.245 3 C -0.110 4.110 4 C -0.017 4.017 5 O -0.297 6.297 6 C 0.000 4.000 7 C -0.076 4.076 8 H 0.086 0.914 9 C 0.319 3.681 10 O -0.396 6.396 11 N -0.347 5.347 12 C -0.020 4.020 13 C -0.154 4.154 14 C 0.043 3.957 15 C -0.026 4.026 16 C 0.040 3.960 17 N -0.318 5.318 18 C -0.384 4.384 19 H 0.084 0.916 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.016 4.016 27 C -0.033 4.033 28 O -0.293 6.293 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.053 0.947 45 H 0.111 0.889 46 H 0.065 0.935 47 H 0.045 0.955 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.191 19.033 4.298 19.635 hybrid contribution -0.169 -0.674 -0.061 0.698 sum 2.023 18.359 4.238 18.950 Atomic orbital electron populations 1.22488 0.86050 1.03980 1.00152 1.61956 1.08962 1.12689 1.40938 1.22859 0.96571 0.89508 1.02015 1.22727 0.92173 0.96511 0.90279 1.88008 1.69496 1.23605 1.48583 1.22521 0.89531 0.84297 1.03645 1.22312 0.97839 0.93252 0.94159 0.91368 1.19706 0.78764 0.86674 0.82997 1.90712 1.49941 1.70265 1.28660 1.48661 1.67076 1.13478 1.05477 1.22098 1.00370 0.97631 0.81934 1.22547 0.99881 0.95273 0.97680 1.22722 0.82404 0.97574 0.93003 1.22770 1.00341 0.80157 0.99321 1.21121 0.96303 0.84000 0.94603 1.44062 1.02003 1.21949 1.63787 1.19141 1.16957 0.96772 1.05522 0.91565 1.25133 1.00995 0.97716 0.95343 1.69973 1.29113 1.41514 1.14192 0.86285 0.78401 0.82245 0.79820 1.21253 1.21442 1.20300 1.21598 0.88649 0.92679 0.98692 1.23105 0.92479 0.93650 0.94071 1.87615 1.17500 1.55586 1.68587 0.89947 0.90981 0.95607 0.93820 0.89101 0.88144 0.91882 0.91258 0.87764 0.91626 0.91539 0.89173 0.88792 0.90234 0.89848 0.94720 0.88941 0.93458 0.95512 0.91871 0.89960 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.13 60.06 0.55 0.80 16 2 N -0.52 -6.42 4.53 -235.97 -1.07 -7.49 16 3 C 0.02 0.17 5.65 -3.72 -0.02 0.15 16 4 C 0.06 0.53 7.01 37.21 0.26 0.79 16 5 O -0.38 -4.26 10.82 -35.23 -0.38 -4.64 16 6 C 0.08 0.91 6.28 37.21 0.23 1.14 16 7 C 0.04 0.47 1.98 -68.75 -0.14 0.33 16 8 H 0.07 0.81 7.12 -51.93 -0.37 0.44 16 9 C 0.53 8.57 6.05 -10.99 -0.07 8.50 16 10 O -0.52 -10.33 15.67 5.56 0.09 -10.24 16 11 N -0.61 -9.63 3.33 -170.76 -0.57 -10.20 16 12 C 0.10 1.30 6.10 -2.95 -0.02 1.28 16 13 C -0.12 -1.64 6.12 -25.25 -0.15 -1.80 16 14 C 0.09 1.55 0.83 -89.64 -0.07 1.48 16 15 C 0.10 1.78 5.87 -2.87 -0.02 1.76 16 16 C 0.17 3.72 4.01 -3.91 -0.02 3.70 16 17 N -0.59 -14.39 2.97 -172.24 -0.51 -14.90 16 18 C -0.25 -6.77 9.63 -15.06 -0.15 -6.91 16 19 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 20 C 0.01 0.19 5.02 -17.43 -0.09 0.10 16 21 N -0.90 -25.10 11.23 55.49 0.62 -24.48 16 22 Si 0.90 21.25 29.57 -169.99 -5.03 16.22 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.11 2.28 6.71 -3.54 -0.02 2.25 16 27 C 0.04 0.81 6.78 37.30 0.25 1.06 16 28 O -0.37 -7.01 10.28 -35.22 -0.36 -7.37 16 29 H 0.08 1.21 6.43 -51.93 -0.33 0.87 16 30 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 31 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.08 7.98 -51.93 -0.41 0.66 16 38 H 0.07 0.77 7.90 -51.93 -0.41 0.36 16 39 H 0.07 0.68 7.98 -51.93 -0.41 0.27 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.27 8.00 -51.93 -0.42 0.85 16 42 H 0.08 1.58 7.82 -51.93 -0.41 1.17 16 43 H 0.08 1.74 5.97 -51.93 -0.31 1.43 16 44 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.09 2.27 6.17 -51.93 -0.32 1.95 16 46 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 49 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 50 H 0.05 0.88 6.26 -51.93 -0.32 0.56 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -31.68 382.06 -9.24 -40.92 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.32 Total: 1.77 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 0.54 Total: 14.64 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -1.53 Total: -57.07 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.66 Total: -22.25 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.68 -9.24 -40.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972348402.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.506 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds