Wall clock time and date at job start Sat Apr 11 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47011 * 111.00410 * 2 1 4 4 C 1.53092 * 109.26081 * 177.60348 * 3 2 1 5 5 O 1.43024 * 109.25390 * 56.84831 * 4 3 2 6 6 C 1.43018 * 113.77685 * 301.34982 * 5 4 3 7 7 C 1.47016 * 110.99931 * 236.36137 * 2 1 3 8 8 H 1.08990 * 109.50706 * 62.41807 * 7 2 1 9 9 C 1.50705 * 109.50744 * 302.32694 * 7 2 1 10 10 O 1.21273 * 120.00100 * 331.12627 * 9 7 2 11 11 N 1.34772 * 119.99609 * 151.11975 * 9 7 2 12 12 C 1.47089 * 125.63355 * 355.80897 * 11 9 7 13 13 C 1.54462 * 107.29674 * 180.73405 * 12 11 9 14 14 C 1.54367 * 102.87558 * 21.49020 * 13 12 11 15 15 C 1.47572 * 125.62893 * 175.49502 * 11 9 7 16 16 C 1.52361 * 110.42158 * 207.61836 * 14 13 12 17 17 N 1.47335 * 108.41303 * 186.40585 * 16 14 13 18 18 C 1.36933 * 121.08107 * 229.14934 * 17 16 14 19 19 H 1.08001 * 119.99581 * 149.72481 * 18 17 16 20 20 C 1.38814 * 120.00015 * 329.72311 * 18 17 16 21 21 N 1.31620 * 120.00024 * 347.12603 * 20 18 17 22 22 Si 1.86796 * 119.99774 * 167.12600 * 20 18 17 23 23 H 1.48500 * 109.47141 * 90.00208 * 22 20 18 24 24 H 1.48497 * 109.47174 * 210.00233 * 22 20 18 25 25 H 1.48506 * 109.47236 * 329.99994 * 22 20 18 26 26 C 1.47168 * 117.83488 * 49.16815 * 17 16 14 27 27 C 1.53275 * 108.57329 * 308.76264 * 26 17 16 28 28 O 1.41881 * 110.74800 * 83.66095 * 14 13 12 29 29 H 1.08999 * 109.47712 * 189.37965 * 1 2 3 30 30 H 1.09003 * 109.47420 * 309.38357 * 1 2 3 31 31 H 1.09003 * 109.46886 * 69.38211 * 1 2 3 32 32 H 1.09002 * 109.50274 * 297.53847 * 3 2 1 33 33 H 1.09001 * 109.50846 * 57.62418 * 3 2 1 34 34 H 1.08995 * 109.50651 * 176.77779 * 4 3 2 35 35 H 1.08993 * 109.50867 * 296.87290 * 4 3 2 36 36 H 1.08996 * 109.47183 * 298.69166 * 6 5 4 37 37 H 1.08999 * 109.54318 * 178.55907 * 6 5 4 38 38 H 1.08993 * 109.87553 * 300.15558 * 12 11 9 39 39 H 1.08997 * 109.87629 * 61.30959 * 12 11 9 40 40 H 1.08997 * 110.73629 * 139.83823 * 13 12 11 41 41 H 1.08996 * 110.73128 * 263.14694 * 13 12 11 42 42 H 1.09004 * 110.37508 * 275.77112 * 15 11 9 43 43 H 1.08994 * 110.37886 * 38.11562 * 15 11 9 44 44 H 1.09002 * 109.67544 * 306.13532 * 16 14 13 45 45 H 1.08995 * 109.68002 * 66.67225 * 16 14 13 46 46 H 0.96995 * 119.99744 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.61904 * 68.48753 * 26 17 16 48 48 H 1.09000 * 109.62096 * 189.03329 * 26 17 16 49 49 H 1.08999 * 109.51287 * 172.93093 * 27 26 17 50 50 H 1.08994 * 109.51382 * 293.03254 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3263 0.0604 5 8 4.0175 0.5572 -1.0402 6 6 3.5250 -0.7852 -1.0719 7 6 1.9958 -0.7603 -1.1427 8 1 1.6822 -0.2848 -2.0719 9 6 1.4670 -2.1707 -1.0955 10 8 1.1903 -2.6793 -0.0299 11 7 1.3014 -2.8668 -2.2376 12 6 1.5131 -2.3460 -3.5969 13 6 1.1861 -3.4893 -4.5828 14 6 0.2846 -4.4199 -3.7436 15 6 0.8842 -4.2792 -2.3308 16 6 0.4027 -5.8578 -4.2333 17 7 -0.5846 -6.6782 -3.5103 18 6 -0.2242 -7.8585 -2.9169 19 1 -0.7424 -8.1984 -2.0323 20 6 0.8070 -8.6180 -3.4522 21 7 1.2678 -8.3474 -4.6550 22 14 1.5407 -10.0242 -2.4654 23 1 0.7986 -11.2761 -2.7606 24 1 2.9686 -10.1962 -2.8353 25 1 1.4383 -9.7180 -1.0159 26 6 -1.9709 -6.1882 -3.4471 27 6 -1.9538 -4.7376 -2.9523 28 8 -1.0614 -3.9719 -3.7684 29 1 -0.3634 -1.0139 0.1675 30 1 -0.3634 0.6521 0.7943 31 1 -0.3633 0.3619 -0.9619 32 1 1.6829 1.8824 -0.9111 33 1 1.6128 1.9094 0.8677 34 1 3.9222 2.3397 0.0030 35 1 3.8385 0.8650 0.9968 36 1 3.8392 -1.3088 -0.1690 37 1 3.9216 -1.2985 -1.9478 38 1 0.8497 -1.5002 -3.7771 39 1 2.5515 -2.0377 -3.7181 40 1 0.6466 -3.1086 -5.4500 41 1 2.0954 -4.0064 -4.8891 42 1 1.7453 -4.9377 -2.2166 43 1 0.1314 -4.5032 -1.5751 44 1 0.2007 -5.8988 -5.3036 45 1 1.4070 -6.2319 -4.0344 46 1 1.9886 -8.8779 -5.0289 47 1 -2.4199 -6.2312 -4.4394 48 1 -2.5456 -6.8041 -2.7554 49 1 -2.9579 -4.3185 -3.0186 50 1 -1.6155 -4.7101 -1.9166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972348402.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:37 Heat of formation + Delta-G solvation = -92.288264 kcal Electronic energy + Delta-G solvation = -32177.617792 eV Core-core repulsion = 28012.539182 eV Total energy + Delta-G solvation = -4165.078611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94026 -40.89996 -39.48316 -37.61747 -36.60865 -36.26960 -33.53608 -33.23801 -32.30979 -30.47380 -29.97605 -29.24619 -27.66709 -25.77524 -25.29788 -25.01767 -24.39642 -22.67815 -22.02025 -20.49285 -20.20637 -18.96727 -18.57808 -17.86556 -17.53730 -17.36454 -16.87290 -16.44994 -16.40671 -16.18570 -16.02478 -15.86855 -15.68439 -15.23367 -15.01866 -14.91902 -14.77680 -14.63359 -14.52684 -13.82844 -13.68163 -13.47551 -13.29879 -13.16143 -13.00620 -12.84884 -12.77214 -12.68674 -12.52599 -12.35384 -12.24149 -12.17618 -12.17006 -11.85252 -11.75694 -11.17619 -11.11529 -10.79626 -10.68018 -10.54626 -9.71876 -9.48956 -8.68920 -7.92894 -5.42802 1.40108 1.43263 1.45599 1.54387 1.72773 2.44864 2.62260 2.73166 2.84480 3.21223 3.30913 3.49916 3.58164 3.65865 3.76410 3.84735 3.90020 4.02160 4.15796 4.20076 4.21577 4.24506 4.29750 4.41802 4.44304 4.46816 4.54177 4.57025 4.61069 4.65186 4.71783 4.76833 4.81264 4.89139 4.89361 4.93623 5.00238 5.04107 5.10313 5.18295 5.19929 5.49689 5.59280 5.66529 5.86278 5.99248 6.28511 6.33335 6.45069 7.03136 7.06605 7.72116 8.28369 9.13062 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.003286 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.969589 B = 8519.523665 C = 8998.947292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.020 3.980 4 C 0.055 3.945 5 O -0.385 6.385 6 C 0.082 3.918 7 C 0.047 3.953 8 H 0.086 0.914 9 C 0.530 3.470 10 O -0.567 6.567 11 N -0.611 5.611 12 C 0.104 3.896 13 C -0.110 4.110 14 C 0.090 3.910 15 C 0.106 3.894 16 C 0.177 3.823 17 N -0.614 5.614 18 C -0.267 4.267 19 H 0.062 0.938 20 C -0.038 4.038 21 N -0.929 5.929 22 Si 0.962 3.038 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.276 1.276 26 C 0.107 3.893 27 C 0.053 3.947 28 O -0.372 6.372 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.012 0.988 45 H 0.065 0.935 46 H 0.253 0.747 47 H 0.024 0.976 48 H 0.066 0.934 49 H 0.119 0.881 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 22.222 3.278 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.268 5.268 3 C -0.107 4.107 4 C -0.022 4.022 5 O -0.303 6.303 6 C 0.004 3.996 7 C -0.065 4.065 8 H 0.103 0.897 9 C 0.318 3.682 10 O -0.445 6.445 11 N -0.345 5.345 12 C -0.018 4.018 13 C -0.148 4.148 14 C 0.048 3.952 15 C -0.018 4.018 16 C 0.051 3.949 17 N -0.338 5.338 18 C -0.397 4.397 19 H 0.080 0.920 20 C -0.235 4.235 21 N -0.574 5.574 22 Si 0.790 3.210 23 H -0.209 1.209 24 H -0.214 1.214 25 H -0.201 1.201 26 C -0.019 4.019 27 C -0.024 4.024 28 O -0.291 6.291 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.149 0.851 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.136 0.864 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.118 0.882 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.030 0.970 45 H 0.084 0.916 46 H 0.062 0.938 47 H 0.042 0.958 48 H 0.085 0.915 49 H 0.136 0.864 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.551 21.922 4.023 22.434 hybrid contribution -0.343 -1.557 0.061 1.596 sum 2.209 20.365 4.084 20.887 Atomic orbital electron populations 1.22397 0.86073 1.02274 1.01406 1.61936 1.09192 1.14678 1.41031 1.22964 0.96560 0.87753 1.03386 1.22968 0.92164 0.97628 0.89425 1.88007 1.69617 1.23171 1.49474 1.22471 0.88739 0.84869 1.03551 1.22242 0.98297 0.90727 0.95214 0.89672 1.20402 0.77747 0.87845 0.82160 1.90687 1.51888 1.71533 1.30413 1.48707 1.66640 1.12156 1.07010 1.22327 1.03003 0.97151 0.79308 1.22609 0.99221 0.94890 0.98088 1.22531 0.83076 0.96022 0.93565 1.22378 0.98710 0.82032 0.98633 1.20898 0.94509 0.86335 0.93190 1.44325 1.03866 1.21883 1.63773 1.19379 1.17071 0.97675 1.05530 0.92041 1.25778 1.01503 0.99968 0.96240 1.70101 1.29490 1.42449 1.15346 0.85366 0.77474 0.79643 0.78511 1.20936 1.21385 1.20134 1.21735 0.86932 0.94458 0.98740 1.23080 0.94135 0.92058 0.93173 1.87623 1.17566 1.55341 1.68577 0.93472 0.89005 0.94664 0.92843 0.87190 0.85140 0.92430 0.92976 0.86374 0.89619 0.88143 0.87399 0.88209 0.92341 0.92737 0.96967 0.91646 0.93759 0.95760 0.91512 0.86356 0.94622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.13 127.69 1.17 1.75 16 2 N -0.54 -12.38 4.53 -900.48 -4.08 -16.46 16 3 C 0.02 0.31 5.65 86.31 0.49 0.80 16 4 C 0.05 0.80 7.01 72.01 0.50 1.31 16 5 O -0.38 -7.55 10.82 -148.98 -1.61 -9.17 16 6 C 0.08 1.75 6.28 72.02 0.45 2.20 16 7 C 0.05 1.11 1.98 44.18 0.09 1.20 16 8 H 0.09 1.72 7.12 -2.39 -0.02 1.70 16 9 C 0.53 16.84 6.05 87.66 0.53 17.37 16 10 O -0.57 -23.17 15.67 -3.01 -0.05 -23.22 16 11 N -0.61 -18.75 3.33 -812.56 -2.71 -21.46 16 12 C 0.10 2.32 6.10 86.76 0.53 2.85 16 13 C -0.11 -2.93 6.12 31.56 0.19 -2.74 16 14 C 0.09 3.29 0.83 -10.16 -0.01 3.28 16 15 C 0.11 4.03 5.87 86.55 0.51 4.54 16 16 C 0.18 8.16 4.01 86.01 0.35 8.51 16 17 N -0.61 -30.64 2.97 -698.86 -2.07 -32.72 16 18 C -0.27 -14.60 9.63 84.03 0.81 -13.80 16 19 H 0.06 3.34 7.86 -2.91 -0.02 3.32 16 20 C -0.04 -2.11 5.02 84.86 0.43 -1.69 16 21 N -0.93 -52.99 11.23 21.65 0.24 -52.75 16 22 Si 0.96 44.64 29.57 68.60 2.03 46.67 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 C 0.11 4.46 6.71 86.34 0.58 5.04 16 27 C 0.05 1.89 6.78 72.07 0.49 2.38 16 28 O -0.37 -13.58 10.28 -148.95 -1.53 -15.11 16 29 H 0.05 1.38 6.43 -2.39 -0.02 1.37 16 30 H 0.09 1.61 8.05 -2.39 -0.02 1.59 16 31 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 1.24 8.09 -2.39 -0.02 1.22 16 34 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.12 2.14 7.98 -2.39 -0.02 2.12 16 38 H 0.09 1.65 7.90 -2.39 -0.02 1.63 16 39 H 0.10 1.65 7.98 -2.39 -0.02 1.63 16 40 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.10 2.55 8.00 -2.39 -0.02 2.53 16 42 H 0.06 2.44 7.82 -2.39 -0.02 2.43 16 43 H 0.05 2.39 5.97 -2.39 -0.01 2.37 16 44 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.07 3.35 6.17 -2.39 -0.01 3.34 16 46 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 47 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 49 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 50 H 0.04 1.36 6.26 -2.39 -0.01 1.35 16 Total: -1.00 -71.50 382.06 -1.76 -73.26 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.92 Total: 17.95 kcal Atomic # 6 Polarization: 25.91 SS G_CDS: 7.10 Total: 33.00 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -8.62 Total: -123.39 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -3.19 Total: -47.49 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -71.50 -1.76 -73.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972348402.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.028 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds