Wall clock time and date at job start Sat Apr 11 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47009 * 110.99902 * 2 1 4 4 C 1.53094 * 109.26127 * 182.39139 * 3 2 1 5 5 O 1.43012 * 109.26206 * 303.15900 * 4 3 2 6 6 C 1.43023 * 113.77751 * 58.63566 * 5 4 3 7 7 C 1.47006 * 111.00135 * 123.64010 * 2 1 3 8 8 H 1.09003 * 109.50890 * 297.58166 * 7 2 1 9 9 C 1.50696 * 109.50742 * 57.67492 * 7 2 1 10 10 O 1.21281 * 120.00418 * 28.06284 * 9 7 2 11 11 N 1.34780 * 119.99678 * 208.06534 * 9 7 2 12 12 C 1.47077 * 125.63331 * 354.70354 * 11 9 7 13 13 C 1.54471 * 107.29690 * 181.03260 * 12 11 9 14 14 C 1.54371 * 102.87162 * 21.49720 * 13 12 11 15 15 C 1.47578 * 125.62973 * 174.74208 * 11 9 7 16 16 C 1.52354 * 110.41108 * 207.59524 * 14 13 12 17 17 N 1.47328 * 108.45194 * 286.39271 * 16 14 13 18 18 C 1.36941 * 121.07699 * 130.86584 * 17 16 14 19 19 H 1.07996 * 119.99484 * 209.81943 * 18 17 16 20 20 C 1.38807 * 120.00153 * 29.81786 * 18 17 16 21 21 N 1.31622 * 120.00209 * 10.32432 * 20 18 17 22 22 Si 1.86802 * 120.00100 * 190.33051 * 20 18 17 23 23 H 1.48503 * 109.47041 * 89.99902 * 22 20 18 24 24 H 1.48498 * 109.46983 * 209.99957 * 22 20 18 25 25 H 1.48500 * 109.46785 * 329.99768 * 22 20 18 26 26 C 1.47167 * 117.84460 * 310.85873 * 17 16 14 27 27 C 1.53283 * 108.53310 * 51.28680 * 26 17 16 28 28 O 1.41879 * 110.73477 * 83.64158 * 14 13 12 29 29 H 1.08997 * 109.47287 * 300.69453 * 1 2 3 30 30 H 1.09008 * 109.47422 * 60.69064 * 1 2 3 31 31 H 1.08997 * 109.47334 * 180.68800 * 1 2 3 32 32 H 1.09005 * 109.51478 * 302.33294 * 3 2 1 33 33 H 1.09002 * 109.50810 * 62.41562 * 3 2 1 34 34 H 1.09006 * 109.50371 * 63.09385 * 4 3 2 35 35 H 1.08998 * 109.51418 * 183.17184 * 4 3 2 36 36 H 1.09000 * 109.54629 * 181.44230 * 6 5 4 37 37 H 1.09011 * 109.46335 * 61.31454 * 6 5 4 38 38 H 1.09002 * 109.88005 * 300.45752 * 12 11 9 39 39 H 1.08998 * 109.88110 * 61.46465 * 12 11 9 40 40 H 1.08997 * 110.73403 * 263.15470 * 13 12 11 41 41 H 1.09002 * 110.73051 * 139.84210 * 13 12 11 42 42 H 1.08996 * 110.37581 * 37.80751 * 15 11 9 43 43 H 1.09007 * 110.46796 * 275.51252 * 15 11 9 44 44 H 1.09003 * 109.64163 * 46.07889 * 16 14 13 45 45 H 1.08995 * 109.64230 * 166.49233 * 16 14 13 46 46 H 0.97000 * 120.00414 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.63049 * 291.56909 * 26 17 16 48 48 H 1.09007 * 109.62796 * 170.99612 * 26 17 16 49 49 H 1.09000 * 109.51631 * 66.85829 * 27 26 17 50 50 H 1.09007 * 109.51482 * 187.00993 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5248 1.3265 -0.0603 5 8 4.0175 0.5574 1.0402 6 6 3.5250 -0.7850 1.0719 7 6 1.9958 -0.7603 1.1426 8 1 1.6822 -0.2848 2.0719 9 6 1.4671 -2.1706 1.0954 10 8 1.1765 -2.6741 0.0309 11 7 1.3171 -2.8726 2.2361 12 6 1.7304 -2.4287 3.5760 13 6 1.3844 -3.5651 4.5634 14 6 1.2960 -4.8031 3.6456 15 6 0.7116 -4.2139 2.3469 16 6 0.3467 -5.8371 4.2380 17 7 1.0122 -6.4774 5.3859 18 6 0.3754 -6.6043 6.5915 19 1 0.9484 -6.6081 7.5070 20 6 -1.0064 -6.7279 6.6371 21 7 -1.6862 -6.9274 5.5278 22 14 -1.9013 -6.6109 8.2726 23 1 -2.2678 -5.1962 8.5363 24 1 -3.1321 -7.4403 8.2238 25 1 -1.0153 -7.1033 9.3578 26 6 2.3834 -6.9766 5.1947 27 6 3.2316 -5.8515 4.5911 28 8 2.5842 -5.3517 3.4166 29 1 -0.3634 0.5246 0.8837 30 1 -0.3634 0.5031 -0.8962 31 1 -0.3634 -1.0275 0.0123 32 1 1.6132 1.9093 -0.8681 33 1 1.6821 1.8828 0.9107 34 1 3.8384 0.8645 -0.9965 35 1 3.9221 2.3399 -0.0037 36 1 3.9216 -1.2984 1.9478 37 1 3.8392 -1.3086 0.1689 38 1 2.8040 -2.2403 3.5893 39 1 1.1916 -1.5212 3.8485 40 1 0.4272 -3.3759 5.0493 41 1 2.1760 -3.6884 5.3025 42 1 0.9917 -4.8285 1.4915 43 1 -0.3734 -4.1375 2.4194 44 1 -0.5676 -5.3463 4.5717 45 1 0.1058 -6.5873 3.4849 46 1 -2.6518 -7.0141 5.5596 47 1 2.3712 -7.8300 4.5168 48 1 2.8018 -7.2750 6.1560 49 1 3.3393 -5.0465 5.3180 50 1 4.2158 -6.2390 4.3274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972348406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:43 Heat of formation + Delta-G solvation = -67.511445 kcal Electronic energy + Delta-G solvation = -31952.928604 eV Core-core repulsion = 27788.924397 eV Total energy + Delta-G solvation = -4164.004207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76816 -39.66959 -38.34582 -36.27825 -35.63728 -34.48781 -32.25067 -31.35046 -31.02830 -29.58564 -29.06486 -27.47915 -26.02360 -24.67070 -24.40982 -23.55163 -22.71567 -21.57126 -20.86511 -19.29276 -18.74819 -17.40417 -17.09654 -16.76505 -16.57561 -16.09357 -15.63400 -15.34200 -15.09600 -14.89412 -14.82883 -14.42822 -14.28240 -14.04752 -13.79289 -13.63168 -13.40374 -13.08223 -12.76611 -12.72996 -12.52789 -12.42331 -12.23955 -12.11342 -11.89470 -11.48493 -11.39143 -11.06649 -11.02336 -10.93343 -10.89904 -10.75248 -10.34211 -10.30104 -10.14867 -10.04969 -9.62293 -9.58149 -9.06459 -8.65837 -8.61867 -8.48368 -6.75396 -5.90027 -3.38488 2.57845 2.86622 3.28939 3.36395 3.37673 3.45591 3.67824 4.14008 4.36271 4.45322 4.52152 4.65181 4.75574 4.82334 4.87509 4.90852 5.04956 5.18228 5.25628 5.26665 5.30270 5.32355 5.37625 5.40731 5.48373 5.55446 5.62708 5.67273 5.78261 5.80827 5.83433 5.94193 6.02185 6.11795 6.21208 6.27950 6.37585 6.46523 6.54200 6.60794 6.64445 6.75973 6.78400 7.01875 7.40637 7.60290 7.65752 7.89326 8.22550 8.29232 9.05770 9.66792 10.26201 11.18026 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.002998 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.940818 B = 9337.033508 C = 9836.024845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.019 3.981 4 C 0.060 3.940 5 O -0.379 6.379 6 C 0.078 3.922 7 C 0.036 3.964 8 H 0.069 0.931 9 C 0.535 3.465 10 O -0.521 6.521 11 N -0.611 5.611 12 C 0.102 3.898 13 C -0.143 4.143 14 C 0.085 3.915 15 C 0.124 3.876 16 C 0.165 3.835 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.067 0.933 20 C 0.006 3.994 21 N -0.905 5.905 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.374 6.374 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.031 0.969 46 H 0.256 0.744 47 H 0.027 0.973 48 H 0.062 0.938 49 H 0.047 0.953 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.130 15.606 -7.285 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.245 5.245 3 C -0.109 4.109 4 C -0.017 4.017 5 O -0.297 6.297 6 C 0.000 4.000 7 C -0.076 4.076 8 H 0.087 0.913 9 C 0.321 3.679 10 O -0.397 6.397 11 N -0.345 5.345 12 C -0.021 4.021 13 C -0.181 4.181 14 C 0.043 3.957 15 C 0.002 3.998 16 C 0.038 3.962 17 N -0.316 5.316 18 C -0.383 4.383 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.018 4.018 27 C -0.032 4.032 28 O -0.293 6.293 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.045 0.955 48 H 0.081 0.919 49 H 0.065 0.935 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.158 15.179 -8.405 19.173 hybrid contribution -1.207 0.326 1.755 2.155 sum 6.951 15.505 -6.650 18.247 Atomic orbital electron populations 1.22491 0.86071 1.03523 1.00640 1.61946 1.08955 1.12760 1.40861 1.22854 0.96583 0.89426 1.02069 1.22726 0.92151 0.96543 0.90284 1.88011 1.69484 1.23615 1.48577 1.22535 0.89521 0.84262 1.03677 1.22289 0.97942 0.93121 0.94261 0.91311 1.19699 0.78716 0.86645 0.82822 1.90709 1.50102 1.70354 1.28501 1.48600 1.60176 1.18910 1.06856 1.22150 0.99519 0.98166 0.82298 1.23027 1.03897 0.93766 0.97400 1.22713 0.86129 0.93719 0.93115 1.22129 0.97318 0.82023 0.98336 1.21119 0.93766 0.92186 0.89084 1.44018 1.11455 1.66361 1.09795 1.19153 0.89697 1.45208 0.84227 0.91485 1.25166 0.97488 0.99692 0.96987 1.69953 1.06786 1.52341 1.25778 0.86241 0.79322 0.77615 0.83271 1.21359 1.21603 1.20384 1.21610 0.87327 0.94137 0.98682 1.23103 0.95425 0.96885 0.87768 1.87651 1.30277 1.78947 1.32392 0.95640 0.90797 0.90090 0.89074 0.93771 0.91894 0.88132 0.87742 0.91270 0.91665 0.91861 0.89375 0.89464 0.89622 0.89641 0.88530 0.95143 0.93385 0.95512 0.91906 0.93509 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.25 60.06 0.56 0.79 16 2 N -0.52 -6.24 4.53 -235.98 -1.07 -7.30 16 3 C 0.02 0.17 5.66 -3.72 -0.02 0.15 16 4 C 0.06 0.52 7.01 37.21 0.26 0.78 16 5 O -0.38 -4.27 10.82 -35.23 -0.38 -4.65 16 6 C 0.08 0.91 6.28 37.21 0.23 1.14 16 7 C 0.04 0.45 1.90 -68.76 -0.13 0.32 16 8 H 0.07 0.81 7.21 -51.93 -0.37 0.44 16 9 C 0.53 8.28 5.93 -10.99 -0.07 8.22 16 10 O -0.52 -9.81 15.67 5.56 0.09 -9.72 16 11 N -0.61 -9.33 3.33 -170.76 -0.57 -9.90 16 12 C 0.10 1.35 6.26 -2.96 -0.02 1.33 16 13 C -0.14 -2.27 5.88 -25.24 -0.15 -2.41 16 14 C 0.09 1.56 0.84 -89.65 -0.08 1.48 16 15 C 0.12 2.14 6.11 -2.87 -0.02 2.12 16 16 C 0.16 3.70 4.01 -3.92 -0.02 3.68 16 17 N -0.59 -13.97 2.97 -172.25 -0.51 -14.49 16 18 C -0.25 -6.52 9.65 -15.06 -0.15 -6.66 16 19 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 20 C 0.01 0.15 5.08 -17.43 -0.09 0.06 16 21 N -0.90 -24.93 11.04 55.49 0.61 -24.32 16 22 Si 0.91 20.67 29.57 -169.99 -5.03 15.64 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.11 2.18 6.71 -3.53 -0.02 2.15 16 27 C 0.05 0.78 6.78 37.30 0.25 1.03 16 28 O -0.37 -6.99 10.28 -35.22 -0.36 -7.35 16 29 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.08 1.11 6.11 -51.93 -0.32 0.80 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.10 1.13 7.38 -51.93 -0.38 0.74 16 37 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.07 0.79 7.38 -51.93 -0.38 0.40 16 39 H 0.06 0.73 7.74 -51.93 -0.40 0.33 16 40 H 0.09 1.47 7.82 -51.93 -0.41 1.07 16 41 H 0.09 1.38 6.09 -51.93 -0.32 1.06 16 42 H 0.09 1.58 8.01 -51.93 -0.42 1.17 16 43 H 0.09 1.45 7.99 -51.93 -0.42 1.03 16 44 H 0.10 2.37 6.05 -51.93 -0.31 2.05 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 1.19 7.96 -51.92 -0.41 0.77 16 49 H 0.05 0.76 6.24 -51.93 -0.32 0.43 16 50 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -30.85 380.47 -9.17 -40.02 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.24 Total: 2.16 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 0.55 Total: 14.18 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -1.54 Total: -56.01 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.66 Total: -21.73 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.85 -9.17 -40.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972348406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.493 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds