Wall clock time and date at job start Sat Apr 11 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47009 * 110.99902 * 2 1 4 4 C 1.53094 * 109.26127 * 182.39139 * 3 2 1 5 5 O 1.43012 * 109.26206 * 303.15900 * 4 3 2 6 6 C 1.43023 * 113.77751 * 58.63566 * 5 4 3 7 7 C 1.47006 * 111.00135 * 123.64010 * 2 1 3 8 8 H 1.09003 * 109.50890 * 297.58166 * 7 2 1 9 9 C 1.50696 * 109.50742 * 57.67492 * 7 2 1 10 10 O 1.21281 * 120.00418 * 28.06284 * 9 7 2 11 11 N 1.34780 * 119.99678 * 208.06534 * 9 7 2 12 12 C 1.47077 * 125.63331 * 354.70354 * 11 9 7 13 13 C 1.54471 * 107.29690 * 181.03260 * 12 11 9 14 14 C 1.54371 * 102.87162 * 21.49720 * 13 12 11 15 15 C 1.47578 * 125.62973 * 174.74208 * 11 9 7 16 16 C 1.52354 * 110.41108 * 207.59524 * 14 13 12 17 17 N 1.47328 * 108.45194 * 286.39271 * 16 14 13 18 18 C 1.36941 * 121.07699 * 130.86584 * 17 16 14 19 19 H 1.07996 * 119.99484 * 209.81943 * 18 17 16 20 20 C 1.38807 * 120.00153 * 29.81786 * 18 17 16 21 21 N 1.31622 * 120.00209 * 10.32432 * 20 18 17 22 22 Si 1.86802 * 120.00100 * 190.33051 * 20 18 17 23 23 H 1.48503 * 109.47041 * 89.99902 * 22 20 18 24 24 H 1.48498 * 109.46983 * 209.99957 * 22 20 18 25 25 H 1.48500 * 109.46785 * 329.99768 * 22 20 18 26 26 C 1.47167 * 117.84460 * 310.85873 * 17 16 14 27 27 C 1.53283 * 108.53310 * 51.28680 * 26 17 16 28 28 O 1.41879 * 110.73477 * 83.64158 * 14 13 12 29 29 H 1.08997 * 109.47287 * 300.69453 * 1 2 3 30 30 H 1.09008 * 109.47422 * 60.69064 * 1 2 3 31 31 H 1.08997 * 109.47334 * 180.68800 * 1 2 3 32 32 H 1.09005 * 109.51478 * 302.33294 * 3 2 1 33 33 H 1.09002 * 109.50810 * 62.41562 * 3 2 1 34 34 H 1.09006 * 109.50371 * 63.09385 * 4 3 2 35 35 H 1.08998 * 109.51418 * 183.17184 * 4 3 2 36 36 H 1.09000 * 109.54629 * 181.44230 * 6 5 4 37 37 H 1.09011 * 109.46335 * 61.31454 * 6 5 4 38 38 H 1.09002 * 109.88005 * 300.45752 * 12 11 9 39 39 H 1.08998 * 109.88110 * 61.46465 * 12 11 9 40 40 H 1.08997 * 110.73403 * 263.15470 * 13 12 11 41 41 H 1.09002 * 110.73051 * 139.84210 * 13 12 11 42 42 H 1.08996 * 110.37581 * 37.80751 * 15 11 9 43 43 H 1.09007 * 110.46796 * 275.51252 * 15 11 9 44 44 H 1.09003 * 109.64163 * 46.07889 * 16 14 13 45 45 H 1.08995 * 109.64230 * 166.49233 * 16 14 13 46 46 H 0.97000 * 120.00414 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.63049 * 291.56909 * 26 17 16 48 48 H 1.09007 * 109.62796 * 170.99612 * 26 17 16 49 49 H 1.09000 * 109.51631 * 66.85829 * 27 26 17 50 50 H 1.09007 * 109.51482 * 187.00993 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5248 1.3265 -0.0603 5 8 4.0175 0.5574 1.0402 6 6 3.5250 -0.7850 1.0719 7 6 1.9958 -0.7603 1.1426 8 1 1.6822 -0.2848 2.0719 9 6 1.4671 -2.1706 1.0954 10 8 1.1765 -2.6741 0.0309 11 7 1.3171 -2.8726 2.2361 12 6 1.7304 -2.4287 3.5760 13 6 1.3844 -3.5651 4.5634 14 6 1.2960 -4.8031 3.6456 15 6 0.7116 -4.2139 2.3469 16 6 0.3467 -5.8371 4.2380 17 7 1.0122 -6.4774 5.3859 18 6 0.3754 -6.6043 6.5915 19 1 0.9484 -6.6081 7.5070 20 6 -1.0064 -6.7279 6.6371 21 7 -1.6862 -6.9274 5.5278 22 14 -1.9013 -6.6109 8.2726 23 1 -2.2678 -5.1962 8.5363 24 1 -3.1321 -7.4403 8.2238 25 1 -1.0153 -7.1033 9.3578 26 6 2.3834 -6.9766 5.1947 27 6 3.2316 -5.8515 4.5911 28 8 2.5842 -5.3517 3.4166 29 1 -0.3634 0.5246 0.8837 30 1 -0.3634 0.5031 -0.8962 31 1 -0.3634 -1.0275 0.0123 32 1 1.6132 1.9093 -0.8681 33 1 1.6821 1.8828 0.9107 34 1 3.8384 0.8645 -0.9965 35 1 3.9221 2.3399 -0.0037 36 1 3.9216 -1.2984 1.9478 37 1 3.8392 -1.3086 0.1689 38 1 2.8040 -2.2403 3.5893 39 1 1.1916 -1.5212 3.8485 40 1 0.4272 -3.3759 5.0493 41 1 2.1760 -3.6884 5.3025 42 1 0.9917 -4.8285 1.4915 43 1 -0.3734 -4.1375 2.4194 44 1 -0.5676 -5.3463 4.5717 45 1 0.1058 -6.5873 3.4849 46 1 -2.6518 -7.0141 5.5596 47 1 2.3712 -7.8300 4.5168 48 1 2.8018 -7.2750 6.1560 49 1 3.3393 -5.0465 5.3180 50 1 4.2158 -6.2390 4.3274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972348406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:42 Heat of formation + Delta-G solvation = -90.435700 kcal Electronic energy + Delta-G solvation = -31953.922674 eV Core-core repulsion = 27788.924397 eV Total energy + Delta-G solvation = -4164.998277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.92815 -40.89607 -39.51887 -37.59897 -36.58717 -36.24539 -33.44600 -33.20640 -32.15522 -30.91329 -29.92877 -29.07253 -27.57597 -25.80192 -25.28430 -25.08953 -24.00037 -23.07398 -21.86498 -20.61843 -20.09005 -18.90967 -18.57278 -17.74707 -17.61151 -17.34611 -16.88584 -16.43337 -16.41209 -16.11993 -15.93639 -15.86201 -15.74534 -15.19863 -15.14754 -14.87944 -14.64563 -14.53700 -14.45196 -13.83055 -13.71892 -13.60302 -13.33981 -13.24169 -13.04672 -12.80254 -12.73297 -12.67412 -12.48832 -12.34383 -12.18489 -12.12128 -11.90001 -11.86070 -11.73945 -11.16633 -11.11452 -10.77010 -10.64967 -10.48949 -9.74636 -9.49571 -8.67361 -7.88539 -5.40513 1.39841 1.47823 1.49091 1.57719 1.70051 2.47940 2.62779 2.72009 2.84591 3.25351 3.32944 3.50920 3.56745 3.64966 3.82502 3.89321 3.91399 4.00586 4.15428 4.19535 4.24394 4.29269 4.37829 4.42209 4.44049 4.49643 4.55944 4.57370 4.59518 4.67311 4.69334 4.76507 4.81895 4.89445 4.92029 4.94129 4.99940 5.05405 5.11413 5.19204 5.26558 5.53317 5.62458 5.66722 5.85921 6.00314 6.32387 6.40177 6.42880 7.01419 7.08556 7.75143 8.31808 9.17285 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.002998 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.940818 B = 9337.033508 C = 9836.024845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.020 3.980 4 C 0.055 3.945 5 O -0.386 6.386 6 C 0.082 3.918 7 C 0.045 3.955 8 H 0.083 0.917 9 C 0.534 3.466 10 O -0.562 6.562 11 N -0.610 5.610 12 C 0.107 3.893 13 C -0.135 4.135 14 C 0.093 3.907 15 C 0.129 3.871 16 C 0.177 3.823 17 N -0.609 5.609 18 C -0.258 4.258 19 H 0.074 0.926 20 C -0.047 4.047 21 N -0.938 5.938 22 Si 0.969 3.031 23 H -0.281 1.281 24 H -0.300 1.300 25 H -0.268 1.268 26 C 0.103 3.897 27 C 0.053 3.947 28 O -0.383 6.383 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.130 0.870 36 H 0.115 0.885 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.071 0.929 45 H -0.010 1.010 46 H 0.250 0.750 47 H 0.011 0.989 48 H 0.075 0.925 49 H 0.063 0.937 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.981 18.393 -6.230 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.107 4.107 4 C -0.022 4.022 5 O -0.304 6.304 6 C 0.005 3.995 7 C -0.067 4.067 8 H 0.101 0.899 9 C 0.323 3.677 10 O -0.440 6.440 11 N -0.344 5.344 12 C -0.015 4.015 13 C -0.173 4.173 14 C 0.051 3.949 15 C 0.005 3.995 16 C 0.050 3.950 17 N -0.333 5.333 18 C -0.387 4.387 19 H 0.092 0.908 20 C -0.242 4.242 21 N -0.584 5.584 22 Si 0.797 3.203 23 H -0.208 1.208 24 H -0.227 1.227 25 H -0.193 1.193 26 C -0.023 4.023 27 C -0.024 4.024 28 O -0.302 6.302 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.148 0.852 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.009 0.991 46 H 0.059 0.941 47 H 0.029 0.971 48 H 0.093 0.907 49 H 0.081 0.919 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.055 17.991 -7.331 21.875 hybrid contribution -1.754 -0.605 1.380 2.312 sum 8.301 17.387 -5.951 20.165 Atomic orbital electron populations 1.22424 0.86040 1.01868 1.02011 1.61950 1.09219 1.14622 1.40833 1.22961 0.96608 0.87786 1.03345 1.22967 0.92112 0.97623 0.89467 1.88007 1.69630 1.23233 1.49534 1.22467 0.88767 0.84804 1.03510 1.22231 0.98391 0.90857 0.95231 0.89916 1.20306 0.77777 0.87659 0.81996 1.90688 1.51849 1.71447 1.30009 1.48627 1.59899 1.17893 1.07947 1.22260 1.01320 0.97778 0.80117 1.22915 1.03645 0.93200 0.97552 1.22386 0.85145 0.93417 0.93915 1.21886 0.97159 0.83297 0.97128 1.20821 0.94142 0.92013 0.87974 1.44276 1.12700 1.66939 1.09387 1.19491 0.90033 1.43945 0.85263 0.90848 1.25901 0.98357 1.00114 0.99869 1.70134 1.06487 1.54029 1.27732 0.85244 0.77705 0.77443 0.79892 1.20783 1.22661 1.19259 1.21801 0.86123 0.95012 0.99325 1.23178 0.95755 0.96061 0.87443 1.87654 1.29934 1.79061 1.33531 0.94442 0.89253 0.93193 0.87151 0.93004 0.92261 0.85224 0.86701 0.92736 0.89316 0.89172 0.90531 0.88751 0.91552 0.90211 0.91065 0.99145 0.94055 0.97064 0.90703 0.91932 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.25 127.69 1.18 1.70 16 2 N -0.54 -11.99 4.53 -900.52 -4.08 -16.07 16 3 C 0.02 0.30 5.66 86.31 0.49 0.79 16 4 C 0.05 0.79 7.01 72.01 0.50 1.29 16 5 O -0.39 -7.57 10.82 -148.98 -1.61 -9.19 16 6 C 0.08 1.75 6.28 72.01 0.45 2.20 16 7 C 0.04 1.04 1.90 44.18 0.08 1.12 16 8 H 0.08 1.68 7.21 -2.39 -0.02 1.67 16 9 C 0.53 16.26 5.93 87.66 0.52 16.78 16 10 O -0.56 -21.63 15.67 -3.03 -0.05 -21.68 16 11 N -0.61 -18.15 3.33 -812.54 -2.71 -20.86 16 12 C 0.11 2.55 6.26 86.77 0.54 3.10 16 13 C -0.14 -4.09 5.88 31.56 0.19 -3.90 16 14 C 0.09 3.43 0.84 -10.16 -0.01 3.43 16 15 C 0.13 4.57 6.11 86.55 0.53 5.10 16 16 C 0.18 8.29 4.01 86.01 0.34 8.64 16 17 N -0.61 -29.11 2.97 -698.88 -2.08 -31.19 16 18 C -0.26 -13.29 9.65 84.03 0.81 -12.48 16 19 H 0.07 3.64 7.85 -2.91 -0.02 3.61 16 20 C -0.05 -2.50 5.08 84.86 0.43 -2.07 16 21 N -0.94 -53.68 11.04 21.65 0.24 -53.44 16 22 Si 0.97 42.82 29.57 68.60 2.03 44.85 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 C 0.10 4.06 6.71 86.35 0.58 4.64 16 27 C 0.05 1.67 6.78 72.08 0.49 2.16 16 28 O -0.38 -13.96 10.28 -148.95 -1.53 -15.49 16 29 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.05 1.38 6.11 -2.39 -0.01 1.37 16 32 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.12 2.14 7.38 -2.39 -0.02 2.13 16 37 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.09 1.77 7.38 -2.39 -0.02 1.76 16 39 H 0.09 1.74 7.74 -2.39 -0.02 1.72 16 40 H 0.08 2.51 7.82 -2.39 -0.02 2.49 16 41 H 0.09 2.73 6.09 -2.39 -0.01 2.72 16 42 H 0.07 2.59 8.01 -2.39 -0.02 2.58 16 43 H 0.08 2.88 7.99 -2.38 -0.02 2.86 16 44 H 0.07 3.68 6.05 -2.39 -0.01 3.66 16 45 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 46 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 47 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.07 2.73 7.96 -2.38 -0.02 2.72 16 49 H 0.06 1.82 6.24 -2.39 -0.01 1.81 16 50 H 0.12 2.94 8.14 -2.38 -0.02 2.92 16 Total: -1.00 -69.12 380.47 -1.73 -70.85 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.93 Total: 19.71 kcal Atomic # 6 Polarization: 25.37 SS G_CDS: 7.14 Total: 32.51 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -8.63 Total: -121.55 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -3.19 Total: -46.36 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -69.12 -1.73 -70.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972348406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.588 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds