Wall clock time and date at job start Sat Apr 11 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00433 * 2 1 4 4 C 1.53002 * 109.47397 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.46945 * 64.99648 * 4 3 2 6 6 C 1.46760 * 124.35205 * 269.72391 * 5 4 3 7 7 C 1.54664 * 105.38368 * 162.85470 * 6 5 4 8 8 H 1.08998 * 111.19413 * 267.59599 * 7 6 5 9 9 C 1.50703 * 110.84947 * 143.78893 * 7 6 5 10 10 O 1.21273 * 120.00700 * 342.12980 * 9 7 6 11 11 N 1.34778 * 119.99504 * 162.12545 * 9 7 6 12 12 C 1.46930 * 120.62961 * 184.79901 * 11 9 7 13 13 C 1.53627 * 108.53834 * 126.37174 * 12 11 9 14 14 C 1.53039 * 109.24489 * 54.85667 * 13 12 11 15 15 N 1.46497 * 109.46000 * 178.48463 * 14 13 12 16 16 C 1.36937 * 120.00682 * 275.07326 * 15 14 13 17 17 H 1.08004 * 119.99701 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00471 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99695 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99923 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47418 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47269 * 119.99891 * 20 18 16 23 23 H 1.48504 * 109.46737 * 239.99279 * 20 18 16 24 24 C 1.53036 * 109.54042 * 298.50905 * 14 13 12 25 25 C 1.46930 * 120.63287 * 5.08412 * 11 9 7 26 26 C 1.54629 * 101.68398 * 25.76907 * 7 6 5 27 27 C 1.34426 * 124.34834 * 90.02472 * 5 4 3 28 28 O 1.21282 * 124.94057 * 0.38960 * 27 5 4 29 29 H 1.09010 * 109.46244 * 60.00586 * 1 2 3 30 30 H 1.08997 * 109.47440 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47246 * 300.00670 * 1 2 3 32 32 H 1.09000 * 109.46499 * 299.99604 * 3 2 1 33 33 H 1.09003 * 109.47029 * 59.99064 * 3 2 1 34 34 H 1.09006 * 109.46771 * 184.99737 * 4 3 2 35 35 H 1.09000 * 109.47149 * 304.99796 * 4 3 2 36 36 H 1.08999 * 110.24764 * 281.98652 * 6 5 4 37 37 H 1.09003 * 110.24569 * 43.98541 * 6 5 4 38 38 H 1.08999 * 109.58439 * 246.20282 * 12 11 9 39 39 H 1.08993 * 109.58593 * 6.63128 * 12 11 9 40 40 H 1.08994 * 109.63604 * 294.86284 * 13 12 11 41 41 H 1.09006 * 109.42469 * 174.72364 * 13 12 11 42 42 H 1.09006 * 109.45717 * 58.52816 * 14 13 12 43 43 H 0.97005 * 119.99666 * 95.06827 * 15 14 13 44 44 H 0.97001 * 119.99953 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.49706 * 301.41553 * 24 14 13 46 46 H 1.09000 * 109.52366 * 181.32830 * 24 14 13 47 47 H 1.09000 * 109.58602 * 353.36549 * 25 11 9 48 48 H 1.09003 * 109.59005 * 113.79666 * 25 11 9 49 49 H 1.08997 * 110.48640 * 216.30881 * 26 7 6 50 50 H 1.09005 * 110.48767 * 93.65991 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.1447 -0.8813 -1.4442 7 6 4.1818 -1.0886 -2.9764 8 1 3.1873 -1.2995 -3.3697 9 6 5.1485 -2.1839 -3.3462 10 8 5.9931 -2.5409 -2.5525 11 7 5.0744 -2.7669 -4.5591 12 6 5.9395 -3.9055 -4.8966 13 6 5.0556 -5.0613 -5.3895 14 6 4.1830 -4.5707 -6.5470 15 7 3.3640 -5.6789 -7.0446 16 6 3.8770 -6.5476 -7.9704 17 1 4.8854 -6.4157 -8.3342 18 6 3.1009 -7.5973 -8.4422 19 7 1.8719 -7.7578 -7.9992 20 14 3.8011 -8.7828 -9.7046 21 1 5.1933 -8.3871 -10.0365 22 1 3.7967 -10.1591 -9.1471 23 1 2.9694 -8.7443 -10.9344 24 6 3.2717 -3.4425 -6.0586 25 6 4.1314 -2.2719 -5.5713 26 6 4.6903 0.2870 -3.4663 27 6 4.2852 1.2451 -2.3678 28 8 4.2443 2.4521 -2.4789 29 1 -0.3632 0.5138 -0.8902 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8462 -0.8901 33 1 1.6886 1.8464 0.8899 34 1 3.9785 2.1765 0.0902 35 1 3.8509 0.5685 0.8427 36 1 5.0785 -1.2162 -0.9928 37 1 3.3014 -1.4202 -1.0121 38 1 6.6368 -3.6144 -5.6821 39 1 6.4930 -4.2188 -4.0114 40 1 4.4190 -5.4083 -4.5757 41 1 5.6878 -5.8805 -5.7322 42 1 4.8200 -4.2009 -7.3506 43 1 2.4583 -5.7972 -6.7180 44 1 1.3296 -8.4916 -8.3286 45 1 2.6518 -3.8047 -5.2384 46 1 2.6337 -3.1093 -6.8772 47 1 3.4915 -1.5069 -5.1315 48 1 4.6843 -1.8503 -6.4108 49 1 4.2096 0.5589 -4.4060 50 1 5.7743 0.2744 -3.5808 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996658655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:51 Heat of formation + Delta-G solvation = -96.885978 kcal Electronic energy + Delta-G solvation = -30374.999539 eV Core-core repulsion = 26209.721557 eV Total energy + Delta-G solvation = -4165.277982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16933 -39.74539 -38.17864 -37.55616 -36.34208 -34.59750 -33.71675 -32.03934 -30.96080 -29.73860 -29.11268 -27.94751 -26.69240 -25.18324 -24.02643 -23.21300 -22.80519 -22.15620 -20.17482 -19.73179 -18.89629 -17.80763 -17.35390 -17.04237 -16.84386 -16.32289 -15.96316 -15.61824 -15.54028 -15.13377 -14.86548 -14.69586 -14.14436 -14.00743 -13.77311 -13.65386 -13.59275 -13.46051 -13.15650 -12.92459 -12.73596 -12.53937 -12.42508 -12.29816 -12.01774 -11.78855 -11.64135 -11.50133 -11.43954 -10.97382 -10.94543 -10.85195 -10.47695 -10.31342 -10.24786 -10.06004 -9.95255 -9.76379 -9.64447 -8.98210 -8.95480 -8.58854 -7.02153 -5.81977 -3.11185 2.27367 2.44957 2.66362 2.97618 3.38366 3.39830 3.45821 3.47842 3.95222 4.13439 4.37198 4.53962 4.57961 4.62030 4.69907 4.79541 4.85451 4.98902 5.00557 5.02863 5.11630 5.16791 5.24072 5.31037 5.32445 5.35227 5.36840 5.39627 5.51397 5.53776 5.58512 5.68884 5.72622 5.85261 5.92413 6.15719 6.19311 6.22786 6.37894 6.49526 6.52735 6.68330 6.83890 6.86032 6.99616 7.39547 7.65526 7.87464 8.08666 8.36377 9.47856 10.04615 10.38988 11.40626 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.002320 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.616386 B =12068.188639 C =12842.919701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.042 3.958 4 C 0.129 3.871 5 N -0.611 5.611 6 C 0.119 3.881 7 C -0.125 4.125 8 H 0.116 0.884 9 C 0.527 3.473 10 O -0.542 6.542 11 N -0.600 5.600 12 C 0.112 3.888 13 C -0.149 4.149 14 C 0.179 3.821 15 N -0.724 5.724 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.141 4.141 25 C 0.107 3.893 26 C -0.140 4.140 27 C 0.521 3.479 28 O -0.535 6.535 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.110 0.890 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 18.877 15.415 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.036 4.036 4 C 0.007 3.993 5 N -0.344 5.344 6 C -0.004 4.004 7 C -0.147 4.147 8 H 0.134 0.866 9 C 0.314 3.686 10 O -0.420 6.420 11 N -0.333 5.333 12 C -0.010 4.010 13 C -0.191 4.191 14 C 0.069 3.931 15 N -0.365 5.365 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.180 4.180 25 C -0.016 4.016 26 C -0.181 4.181 27 C 0.309 3.691 28 O -0.412 6.412 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.091 0.909 49 H 0.128 0.872 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.425 19.068 15.693 24.737 hybrid contribution -0.411 -0.713 -0.668 1.060 sum 1.015 18.356 15.025 23.743 Atomic orbital electron populations 1.22751 0.80807 1.03007 0.99904 1.87887 1.19885 1.27426 1.95424 1.23045 0.94198 0.85386 1.00928 1.21438 0.92155 0.99825 0.85866 1.48188 1.66211 1.07960 1.12067 1.22103 1.04270 0.80204 0.93851 1.22293 1.00853 0.94129 0.97419 0.86633 1.19972 0.84498 0.82578 0.81561 1.90683 1.37176 1.64248 1.49903 1.48141 1.39176 1.32761 1.13191 1.21837 0.92591 0.85719 1.00861 1.22750 0.99194 0.96859 1.00254 1.20163 0.91806 0.88002 0.93172 1.42433 1.14738 1.29905 1.49394 1.19271 0.97732 1.04974 1.15055 0.91106 1.24749 0.96237 0.99313 1.00638 1.69668 1.08351 1.33117 1.46914 0.86138 0.78023 0.81086 0.81058 1.20535 1.21872 1.21877 1.22227 0.98586 0.95797 1.01404 1.21873 0.91542 0.96944 0.91213 1.22307 1.04318 0.92286 0.99170 1.20782 0.75975 0.88107 0.84222 1.90726 1.54192 1.13546 1.82752 0.94072 0.89388 0.94144 0.92767 0.92170 0.88326 0.89155 0.88948 0.88909 0.91653 0.89607 0.92205 0.90675 0.93386 0.78288 0.93536 0.91659 0.90384 0.90088 0.90870 0.87158 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.40 9.92 -35.23 -0.35 -3.75 16 3 C 0.04 0.32 6.28 37.16 0.23 0.55 16 4 C 0.13 0.99 6.32 -4.04 -0.03 0.97 16 5 N -0.61 -5.86 2.88 -172.30 -0.50 -6.35 16 6 C 0.12 1.13 6.76 -3.03 -0.02 1.11 16 7 C -0.13 -1.17 2.49 -90.04 -0.22 -1.40 16 8 H 0.12 0.94 6.75 -51.93 -0.35 0.59 16 9 C 0.53 6.50 6.85 -10.98 -0.08 6.43 16 10 O -0.54 -8.37 15.00 5.56 0.08 -8.29 16 11 N -0.60 -7.39 2.97 -172.49 -0.51 -7.90 16 12 C 0.11 1.55 6.45 -3.48 -0.02 1.53 16 13 C -0.15 -2.48 5.67 -26.39 -0.15 -2.63 16 14 C 0.18 3.20 2.73 -67.89 -0.19 3.01 16 15 N -0.72 -17.10 5.12 -53.39 -0.27 -17.38 16 16 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 17 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 20 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 C -0.14 -1.98 5.55 -26.61 -0.15 -2.13 16 25 C 0.11 1.14 6.29 -3.71 -0.02 1.12 16 26 C -0.14 -1.26 6.21 -26.74 -0.17 -1.43 16 27 C 0.52 5.82 8.02 -10.86 -0.09 5.74 16 28 O -0.54 -7.69 17.59 5.56 0.10 -7.60 16 29 H 0.04 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.72 7.92 -51.93 -0.41 0.31 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.98 6.86 -51.93 -0.36 0.63 16 37 H 0.09 0.87 7.47 -51.93 -0.39 0.48 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.24 7.03 -51.93 -0.37 0.88 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.38 9.72 7.80 -40.82 -0.32 9.40 16 44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.08 0.66 5.24 -51.93 -0.27 0.39 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.11 0.82 7.89 -51.93 -0.41 0.41 16 50 H 0.11 1.00 7.89 -51.93 -0.41 0.59 16 LS Contribution 400.24 15.07 6.03 6.03 Total: -1.00 -33.59 400.24 -8.06 -41.65 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.32 Total: 6.26 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.03 Total: 7.21 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.56 Total: -58.37 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.17 Total: -19.63 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.59 -8.06 -41.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996658655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.237 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds