Wall clock time and date at job start Sat Apr 11 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00433 * 2 1 4 4 C 1.53002 * 109.47397 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.46945 * 64.99648 * 4 3 2 6 6 C 1.46760 * 124.35205 * 269.72391 * 5 4 3 7 7 C 1.54664 * 105.38368 * 162.85470 * 6 5 4 8 8 H 1.08998 * 111.19413 * 267.59599 * 7 6 5 9 9 C 1.50703 * 110.84947 * 143.78893 * 7 6 5 10 10 O 1.21273 * 120.00700 * 342.12980 * 9 7 6 11 11 N 1.34778 * 119.99504 * 162.12545 * 9 7 6 12 12 C 1.46930 * 120.62961 * 184.79901 * 11 9 7 13 13 C 1.53627 * 108.53834 * 126.37174 * 12 11 9 14 14 C 1.53039 * 109.24489 * 54.85667 * 13 12 11 15 15 N 1.46497 * 109.46000 * 178.48463 * 14 13 12 16 16 C 1.36937 * 120.00682 * 275.07326 * 15 14 13 17 17 H 1.08004 * 119.99701 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00471 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99695 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99923 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47418 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47269 * 119.99891 * 20 18 16 23 23 H 1.48504 * 109.46737 * 239.99279 * 20 18 16 24 24 C 1.53036 * 109.54042 * 298.50905 * 14 13 12 25 25 C 1.46930 * 120.63287 * 5.08412 * 11 9 7 26 26 C 1.54629 * 101.68398 * 25.76907 * 7 6 5 27 27 C 1.34426 * 124.34834 * 90.02472 * 5 4 3 28 28 O 1.21282 * 124.94057 * 0.38960 * 27 5 4 29 29 H 1.09010 * 109.46244 * 60.00586 * 1 2 3 30 30 H 1.08997 * 109.47440 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47246 * 300.00670 * 1 2 3 32 32 H 1.09000 * 109.46499 * 299.99604 * 3 2 1 33 33 H 1.09003 * 109.47029 * 59.99064 * 3 2 1 34 34 H 1.09006 * 109.46771 * 184.99737 * 4 3 2 35 35 H 1.09000 * 109.47149 * 304.99796 * 4 3 2 36 36 H 1.08999 * 110.24764 * 281.98652 * 6 5 4 37 37 H 1.09003 * 110.24569 * 43.98541 * 6 5 4 38 38 H 1.08999 * 109.58439 * 246.20282 * 12 11 9 39 39 H 1.08993 * 109.58593 * 6.63128 * 12 11 9 40 40 H 1.08994 * 109.63604 * 294.86284 * 13 12 11 41 41 H 1.09006 * 109.42469 * 174.72364 * 13 12 11 42 42 H 1.09006 * 109.45717 * 58.52816 * 14 13 12 43 43 H 0.97005 * 119.99666 * 95.06827 * 15 14 13 44 44 H 0.97001 * 119.99953 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.49706 * 301.41553 * 24 14 13 46 46 H 1.09000 * 109.52366 * 181.32830 * 24 14 13 47 47 H 1.09000 * 109.58602 * 353.36549 * 25 11 9 48 48 H 1.09003 * 109.59005 * 113.79666 * 25 11 9 49 49 H 1.08997 * 110.48640 * 216.30881 * 26 7 6 50 50 H 1.09005 * 110.48767 * 93.65991 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.1447 -0.8813 -1.4442 7 6 4.1818 -1.0886 -2.9764 8 1 3.1873 -1.2995 -3.3697 9 6 5.1485 -2.1839 -3.3462 10 8 5.9931 -2.5409 -2.5525 11 7 5.0744 -2.7669 -4.5591 12 6 5.9395 -3.9055 -4.8966 13 6 5.0556 -5.0613 -5.3895 14 6 4.1830 -4.5707 -6.5470 15 7 3.3640 -5.6789 -7.0446 16 6 3.8770 -6.5476 -7.9704 17 1 4.8854 -6.4157 -8.3342 18 6 3.1009 -7.5973 -8.4422 19 7 1.8719 -7.7578 -7.9992 20 14 3.8011 -8.7828 -9.7046 21 1 5.1933 -8.3871 -10.0365 22 1 3.7967 -10.1591 -9.1471 23 1 2.9694 -8.7443 -10.9344 24 6 3.2717 -3.4425 -6.0586 25 6 4.1314 -2.2719 -5.5713 26 6 4.6903 0.2870 -3.4663 27 6 4.2852 1.2451 -2.3678 28 8 4.2443 2.4521 -2.4789 29 1 -0.3632 0.5138 -0.8902 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8462 -0.8901 33 1 1.6886 1.8464 0.8899 34 1 3.9785 2.1765 0.0902 35 1 3.8509 0.5685 0.8427 36 1 5.0785 -1.2162 -0.9928 37 1 3.3014 -1.4202 -1.0121 38 1 6.6368 -3.6144 -5.6821 39 1 6.4930 -4.2188 -4.0114 40 1 4.4190 -5.4083 -4.5757 41 1 5.6878 -5.8805 -5.7322 42 1 4.8200 -4.2009 -7.3506 43 1 2.4583 -5.7972 -6.7180 44 1 1.3296 -8.4916 -8.3286 45 1 2.6518 -3.8047 -5.2384 46 1 2.6337 -3.1093 -6.8772 47 1 3.4915 -1.5069 -5.1315 48 1 4.6843 -1.8503 -6.4108 49 1 4.2096 0.5589 -4.4060 50 1 5.7743 0.2744 -3.5808 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996658655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:50 Heat of formation + Delta-G solvation = -119.952798 kcal Electronic energy + Delta-G solvation = -30375.999791 eV Core-core repulsion = 26209.721557 eV Total energy + Delta-G solvation = -4166.278235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.04044 -40.72335 -38.82370 -38.74614 -37.24817 -36.14839 -34.52934 -33.69654 -32.05390 -31.08262 -30.14858 -28.74996 -27.25933 -26.63394 -25.19049 -24.16600 -23.95015 -23.27790 -21.40213 -20.54385 -19.98490 -19.09408 -18.61426 -18.08219 -17.44812 -17.25773 -16.75158 -16.62626 -16.45480 -16.23796 -16.07614 -15.48939 -15.44932 -15.37837 -15.10113 -14.89289 -14.53337 -14.41465 -14.18570 -14.07305 -13.74577 -13.36652 -13.30541 -13.09355 -12.99796 -12.87859 -12.85964 -12.64357 -12.44081 -12.38053 -12.14781 -12.10348 -12.03399 -11.90333 -11.66593 -11.38327 -11.14176 -10.88646 -10.71693 -10.62036 -9.76185 -9.66295 -8.98013 -7.92507 -5.20093 1.41844 1.48480 1.49249 1.52751 1.58528 1.84952 2.07414 2.57655 2.83598 3.13217 3.36841 3.41295 3.55916 3.82764 3.86321 3.89473 4.03392 4.10192 4.14577 4.20037 4.21409 4.34033 4.42185 4.46143 4.50253 4.52320 4.56561 4.57988 4.63671 4.67244 4.74766 4.78450 4.86013 4.87895 4.90493 4.90637 4.94716 5.03797 5.16601 5.36570 5.47097 5.52453 5.57567 5.63871 5.99968 6.20687 6.30421 6.41471 7.05426 7.10447 7.36650 8.13830 8.35352 9.31170 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.002320 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.616386 B =12068.188639 C =12842.919701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.046 3.954 4 C 0.122 3.878 5 N -0.607 5.607 6 C 0.123 3.877 7 C -0.115 4.115 8 H 0.136 0.864 9 C 0.529 3.471 10 O -0.575 6.575 11 N -0.601 5.601 12 C 0.122 3.878 13 C -0.138 4.138 14 C 0.172 3.828 15 N -0.738 5.738 16 C -0.232 4.232 17 H 0.076 0.924 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.967 3.033 21 H -0.266 1.266 22 H -0.298 1.298 23 H -0.295 1.295 24 C -0.133 4.133 25 C 0.113 3.887 26 C -0.133 4.133 27 C 0.516 3.484 28 O -0.572 6.572 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.372 0.628 44 H 0.249 0.751 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.115 0.885 48 H 0.092 0.908 49 H 0.134 0.866 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 20.421 15.479 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.032 4.032 4 C 0.001 3.999 5 N -0.340 5.340 6 C 0.000 4.000 7 C -0.136 4.136 8 H 0.154 0.846 9 C 0.317 3.683 10 O -0.455 6.455 11 N -0.333 5.333 12 C -0.001 4.001 13 C -0.179 4.179 14 C 0.063 3.937 15 N -0.377 5.377 16 C -0.364 4.364 17 H 0.094 0.906 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.797 3.203 21 H -0.190 1.190 22 H -0.225 1.225 23 H -0.222 1.222 24 C -0.171 4.171 25 C -0.009 4.009 26 C -0.173 4.173 27 C 0.305 3.695 28 O -0.452 6.452 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.203 0.797 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.133 0.867 48 H 0.111 0.889 49 H 0.152 0.848 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.806 20.641 15.776 26.042 hybrid contribution -0.488 -1.166 -0.598 1.398 sum 1.318 19.475 15.178 24.726 Atomic orbital electron populations 1.22862 0.79843 1.03544 1.00582 1.87851 1.21036 1.28084 1.95556 1.23022 0.93764 0.85077 1.01294 1.21631 0.92573 1.00152 0.85546 1.48306 1.65361 1.07914 1.12387 1.22028 1.03821 0.80103 0.94043 1.22252 1.00844 0.93199 0.97334 0.84593 1.20385 0.84299 0.82720 0.80858 1.90679 1.38654 1.65417 1.50763 1.48181 1.39151 1.32221 1.13710 1.21615 0.92277 0.85281 1.00891 1.22523 0.98773 0.97500 0.99074 1.20447 0.92156 0.87646 0.93408 1.42669 1.14812 1.31054 1.49135 1.19639 0.97628 1.04759 1.14371 0.90593 1.25497 0.96792 1.01472 1.03205 1.69811 1.09668 1.33868 1.48785 0.85162 0.77935 0.78653 0.78577 1.18990 1.22526 1.22221 1.22111 0.98274 0.95532 1.01232 1.22001 0.91369 0.95926 0.91632 1.22323 1.04578 0.91018 0.99404 1.21117 0.75531 0.87861 0.85005 1.90708 1.55978 1.15092 1.83455 0.94001 0.88982 0.92869 0.94043 0.90119 0.88113 0.87836 0.90122 0.88515 0.90065 0.90332 0.93907 0.92675 0.93305 0.79674 0.94202 0.92320 0.90109 0.86656 0.88940 0.84844 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -6.44 9.92 -148.98 -1.48 -7.92 16 3 C 0.05 0.61 6.28 71.98 0.45 1.07 16 4 C 0.12 1.71 6.32 86.38 0.55 2.25 16 5 N -0.61 -10.67 2.88 -817.61 -2.35 -13.03 16 6 C 0.12 2.12 6.76 86.90 0.59 2.70 16 7 C -0.11 -1.82 2.49 -10.42 -0.03 -1.85 16 8 H 0.14 1.66 6.75 -2.39 -0.02 1.65 16 9 C 0.53 11.84 6.85 87.66 0.60 12.44 16 10 O -0.58 -17.02 15.00 -3.01 -0.05 -17.07 16 11 N -0.60 -13.23 2.97 -818.04 -2.43 -15.65 16 12 C 0.12 3.18 6.45 86.51 0.56 3.74 16 13 C -0.14 -4.52 5.67 30.82 0.17 -4.35 16 14 C 0.17 5.97 2.73 45.02 0.12 6.10 16 15 N -0.74 -34.91 5.12 -322.82 -1.65 -36.57 16 16 C -0.23 -12.32 9.93 84.03 0.83 -11.49 16 17 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 18 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 19 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 20 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 C -0.13 -3.43 5.55 30.67 0.17 -3.26 16 25 C 0.11 1.99 6.29 86.36 0.54 2.53 16 26 C -0.13 -2.00 6.21 30.59 0.19 -1.81 16 27 C 0.52 10.63 8.02 87.90 0.71 11.34 16 28 O -0.57 -15.85 17.59 -3.04 -0.05 -15.90 16 29 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.10 1.37 7.92 -2.38 -0.02 1.35 16 35 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.63 6.86 -2.39 -0.02 1.61 16 37 H 0.10 1.62 7.47 -2.39 -0.02 1.61 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 2.20 7.03 -2.39 -0.02 2.19 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.05 1.71 8.08 -2.38 -0.02 1.69 16 43 H 0.37 19.13 7.80 -92.70 -0.72 18.41 16 44 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.12 1.31 5.24 -2.39 -0.01 1.29 16 48 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.13 1.42 7.89 -2.39 -0.02 1.40 16 50 H 0.11 1.71 7.89 -2.38 -0.02 1.69 16 Total: -1.00 -73.56 400.24 1.69 -71.87 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.22 Total: 27.79 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 7.17 Total: 17.10 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -6.15 Total: -123.16 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -1.58 Total: -40.89 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -73.56 1.69 -71.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996658655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.081 kcal (2) G-P(sol) polarization free energy of solvation -73.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds