Wall clock time and date at job start Sat Apr 11 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46773 * 124.34741 * 2 1 4 4 C 1.54475 * 105.47225 * 162.98549 * 3 2 1 5 5 C 1.54626 * 101.76677 * 25.41427 * 4 3 2 6 6 H 1.09000 * 110.49089 * 216.52126 * 5 4 3 7 7 C 1.50703 * 110.59923 * 93.93630 * 5 4 3 8 8 O 1.21285 * 119.99632 * 349.30698 * 7 5 4 9 9 N 1.34768 * 120.00154 * 169.30422 * 7 5 4 10 10 C 1.46924 * 120.63116 * 184.55747 * 9 7 5 11 11 C 1.53627 * 108.54752 * 126.36913 * 10 9 7 12 12 C 1.53041 * 109.23962 * 54.85554 * 11 10 9 13 13 N 1.46503 * 109.46307 * 178.49375 * 12 11 10 14 14 C 1.36942 * 119.99474 * 60.06645 * 13 12 11 15 15 H 1.07994 * 120.00256 * 327.71464 * 14 13 12 16 16 C 1.38809 * 119.99441 * 147.71897 * 14 13 12 17 17 N 1.31620 * 120.00127 * 334.89007 * 16 14 13 18 18 Si 1.86805 * 119.99925 * 154.88821 * 16 14 13 19 19 H 1.48507 * 109.46933 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46945 * 119.99630 * 18 16 14 21 21 H 1.48498 * 109.47247 * 239.99863 * 18 16 14 22 22 C 1.46492 * 120.00020 * 240.06939 * 13 12 11 23 23 C 1.53004 * 109.47150 * 84.55564 * 22 13 12 24 24 O 1.42902 * 109.47192 * 64.99843 * 23 22 13 25 25 C 1.53046 * 109.53824 * 298.51471 * 12 11 10 26 26 C 1.46924 * 120.63028 * 4.83712 * 9 7 5 27 27 C 1.34417 * 124.35264 * 180.02562 * 2 1 3 28 28 O 1.21280 * 124.94048 * 0.67109 * 27 2 1 29 29 H 1.08998 * 109.46273 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46737 * 300.02139 * 1 2 3 31 31 H 1.08992 * 109.47248 * 60.02676 * 1 2 3 32 32 H 1.08992 * 110.24335 * 43.98412 * 3 2 1 33 33 H 1.08994 * 110.31805 * 282.02386 * 3 2 1 34 34 H 1.08997 * 110.97037 * 267.29589 * 4 3 2 35 35 H 1.09001 * 111.00438 * 143.54931 * 4 3 2 36 36 H 1.09006 * 109.58767 * 246.19870 * 10 9 7 37 37 H 1.09002 * 109.59035 * 6.62834 * 10 9 7 38 38 H 1.09004 * 109.63250 * 294.86837 * 11 10 9 39 39 H 1.08994 * 109.45925 * 174.73728 * 11 10 9 40 40 H 1.09002 * 109.45062 * 58.52543 * 12 11 10 41 41 H 0.97004 * 119.99863 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.47019 * 204.55142 * 22 13 12 43 43 H 1.09001 * 109.47419 * 324.55627 * 22 13 12 44 44 H 1.09001 * 109.46996 * 184.99863 * 23 22 13 45 45 H 1.09003 * 109.47248 * 304.99507 * 23 22 13 46 46 H 0.96698 * 113.99460 * 179.97438 * 24 23 22 47 47 H 1.08998 * 109.49703 * 301.41495 * 25 12 11 48 48 H 1.08996 * 109.52247 * 181.33270 * 25 12 11 49 49 H 1.09001 * 109.58963 * 353.37267 * 26 9 7 50 50 H 1.09002 * 109.58816 * 113.65896 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7488 0.4356 5 6 3.6898 -0.7377 0.0101 6 1 4.2327 -1.3458 0.7336 7 6 4.2846 -0.9000 -1.3651 8 8 4.5085 0.0769 -2.0481 9 7 4.5677 -2.1306 -1.8359 10 6 5.2388 -2.3003 -3.1319 11 6 6.4821 -3.1791 -2.9271 12 6 6.0674 -4.4915 -2.2579 13 7 7.2441 -5.3484 -2.0929 14 6 8.3056 -4.9168 -1.3430 15 1 8.5499 -3.8654 -1.3078 16 6 9.0676 -5.8308 -0.6283 17 7 8.5402 -6.9770 -0.2536 18 14 10.8417 -5.4340 -0.1983 19 1 11.1917 -4.0924 -0.7303 20 1 11.0063 -5.4392 1.2775 21 1 11.7370 -6.4547 -0.7999 22 6 7.2853 -6.6669 -2.7301 23 6 7.7648 -6.5200 -4.1756 24 8 9.1156 -6.0536 -4.1843 25 6 5.4556 -4.1958 -0.8865 26 6 4.2058 -3.3283 -1.0657 27 6 2.2235 -1.1097 -0.0005 28 8 1.7947 -2.2441 -0.0126 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5134 -0.8902 32 1 1.8984 1.9383 0.7102 33 1 2.3309 1.6444 -0.9997 34 1 3.8269 0.8449 1.5140 35 1 4.4758 1.3010 -0.0962 36 1 4.5592 -2.7821 -3.8349 37 1 5.5379 -1.3261 -3.5188 38 1 7.1986 -2.6576 -2.2923 39 1 6.9394 -3.3920 -3.8933 40 1 5.3322 -5.0003 -2.8814 41 1 9.0728 -7.6158 0.2456 42 1 7.9719 -7.3133 -2.1834 43 1 6.2877 -7.1061 -2.7211 44 1 7.7110 -7.4867 -4.6762 45 1 7.1300 -5.8044 -4.6981 46 1 9.4858 -5.9376 -5.0700 47 1 6.1818 -3.6648 -0.2711 48 1 5.1820 -5.1321 -0.4002 49 1 3.8230 -3.0328 -0.0888 50 1 3.4419 -3.8909 -1.6025 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098457110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:19 Heat of formation + Delta-G solvation = -80.174019 kcal Electronic energy + Delta-G solvation = -31666.035677 eV Core-core repulsion = 27501.482379 eV Total energy + Delta-G solvation = -4164.553297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.23959 -39.26380 -37.62298 -36.60082 -36.03072 -34.57606 -33.16491 -31.97188 -30.62608 -30.28914 -28.24535 -27.52597 -26.99140 -24.86282 -23.54970 -22.82467 -22.15854 -20.82915 -20.14598 -19.61648 -18.75061 -17.70691 -16.95304 -16.57668 -16.30518 -15.99209 -15.80440 -15.26587 -14.83752 -14.60354 -14.36499 -14.02876 -13.87754 -13.75085 -13.69290 -13.26992 -13.08740 -12.97522 -12.83464 -12.72594 -12.57718 -12.41069 -12.06810 -11.90085 -11.56290 -11.52199 -11.41202 -11.12265 -10.91372 -10.67975 -10.63638 -10.44222 -10.13332 -9.97845 -9.82681 -9.81897 -9.67656 -9.40297 -9.06082 -8.97533 -8.36362 -8.31417 -6.54100 -5.68636 -3.14893 2.18167 2.56361 2.83520 3.22776 3.47060 3.55476 3.59154 4.08672 4.19549 4.46896 4.60184 4.68911 4.86253 5.00266 5.09966 5.19160 5.23671 5.29588 5.30213 5.41897 5.42808 5.45690 5.57280 5.63774 5.64942 5.79443 5.82072 5.87149 6.04910 6.07502 6.12104 6.20279 6.22244 6.33339 6.43170 6.49244 6.68074 6.71854 6.77708 6.83793 6.86948 7.14135 7.21933 7.57957 7.72557 7.89639 7.93504 8.21239 8.47544 8.64967 9.28477 9.95225 10.47366 11.34568 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.003115 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.291561 B = 8985.519846 C = 9329.098242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.621 5.621 3 C 0.104 3.896 4 C -0.116 4.116 5 C -0.151 4.151 6 H 0.133 0.867 7 C 0.533 3.467 8 O -0.546 6.546 9 N -0.593 5.593 10 C 0.114 3.886 11 C -0.137 4.137 12 C 0.176 3.824 13 N -0.572 5.572 14 C -0.231 4.231 15 H 0.058 0.942 16 C 0.013 3.987 17 N -0.892 5.892 18 Si 0.894 3.106 19 H -0.279 1.279 20 H -0.296 1.296 21 H -0.290 1.290 22 C 0.140 3.860 23 C 0.060 3.940 24 O -0.544 6.544 25 C -0.135 4.135 26 C 0.106 3.894 27 C 0.530 3.470 28 O -0.514 6.514 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.250 0.750 42 H 0.107 0.893 43 H 0.035 0.965 44 H 0.019 0.981 45 H 0.021 0.979 46 H 0.349 0.651 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.760 12.847 -1.486 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.356 5.356 3 C -0.019 4.019 4 C -0.154 4.154 5 C -0.176 4.176 6 H 0.150 0.850 7 C 0.319 3.681 8 O -0.424 6.424 9 N -0.325 5.325 10 C -0.009 4.009 11 C -0.177 4.177 12 C 0.068 3.932 13 N -0.290 5.290 14 C -0.361 4.361 15 H 0.076 0.924 16 C -0.186 4.186 17 N -0.536 5.536 18 Si 0.725 3.275 19 H -0.204 1.204 20 H -0.224 1.224 21 H -0.217 1.217 22 C 0.014 3.986 23 C -0.021 4.021 24 O -0.345 6.345 25 C -0.175 4.175 26 C -0.017 4.017 27 C 0.316 3.684 28 O -0.390 6.390 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.125 0.875 43 H 0.053 0.947 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.192 0.808 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.105 0.895 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.986 12.566 -1.098 18.834 hybrid contribution 0.996 0.039 -0.412 1.079 sum -12.990 12.605 -1.509 18.163 Atomic orbital electron populations 1.21571 0.77734 1.03902 1.01527 1.48108 1.06651 1.07402 1.73459 1.22132 0.90225 0.87026 1.02523 1.22566 0.97630 0.92859 1.02362 1.22160 0.95894 1.00914 0.98606 0.84961 1.19626 0.78467 0.83239 0.86795 1.90653 1.54780 1.38259 1.58728 1.48135 1.57311 1.05778 1.21234 1.21812 0.94398 1.01131 0.83557 1.22427 0.95936 0.97649 1.01688 1.20321 0.89153 0.90512 0.93201 1.43785 1.14199 1.15270 1.55796 1.18811 1.03854 0.92887 1.20516 0.92432 1.24863 0.99043 0.97545 0.97153 1.70025 1.34658 1.10144 1.38811 0.86370 0.86474 0.77897 0.76758 1.20413 1.22390 1.21692 1.21060 0.98837 0.89611 0.89114 1.23094 0.83068 0.94446 1.01469 1.86854 1.27949 1.89396 1.30298 1.22343 0.95319 0.99330 1.00542 1.22091 0.97868 0.85480 0.96275 1.20283 0.87913 0.84634 0.75564 1.90754 1.77884 1.20575 1.49756 0.89793 0.91922 0.92005 0.90141 0.90373 0.89260 0.87471 0.92075 0.89737 0.91271 0.91460 0.93523 0.93963 0.87526 0.94653 0.96312 0.96046 0.80843 0.91093 0.90824 0.89532 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 11.14 59.85 0.67 1.41 16 2 N -0.62 -6.47 3.33 -180.29 -0.60 -7.07 16 3 C 0.10 0.86 7.35 -3.12 -0.02 0.84 16 4 C -0.12 -1.06 6.43 -25.10 -0.16 -1.22 16 5 C -0.15 -1.87 2.35 -91.78 -0.22 -2.08 16 6 H 0.13 1.55 7.23 -51.93 -0.38 1.18 16 7 C 0.53 8.21 6.99 -10.99 -0.08 8.13 16 8 O -0.55 -9.36 15.06 5.55 0.08 -9.27 16 9 N -0.59 -9.47 2.97 -172.50 -0.51 -9.98 16 10 C 0.11 1.80 6.45 -3.49 -0.02 1.78 16 11 C -0.14 -2.48 5.32 -26.38 -0.14 -2.62 16 12 C 0.18 3.47 2.59 -67.88 -0.18 3.30 16 13 N -0.57 -13.51 2.36 -165.61 -0.39 -13.90 16 14 C -0.23 -6.15 8.05 -15.06 -0.12 -6.27 16 15 H 0.06 1.58 6.88 -52.49 -0.36 1.22 16 16 C 0.01 0.35 4.86 -17.43 -0.08 0.26 16 17 N -0.89 -25.53 11.42 55.49 0.63 -24.90 16 18 Si 0.89 22.41 29.62 -169.99 -5.04 17.38 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 C 0.14 3.23 5.59 -4.04 -0.02 3.21 16 23 C 0.06 1.17 7.39 37.16 0.27 1.44 16 24 O -0.54 -11.40 13.39 -35.23 -0.47 -11.87 16 25 C -0.14 -2.56 5.31 -26.61 -0.14 -2.70 16 26 C 0.11 1.69 5.38 -3.71 -0.02 1.67 16 27 C 0.53 7.01 7.09 -10.86 -0.08 6.94 16 28 O -0.51 -8.24 15.05 5.56 0.08 -8.16 16 29 H 0.08 0.75 7.53 -51.93 -0.39 0.36 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.11 1.06 7.15 -51.93 -0.37 0.68 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.36 7.03 -51.93 -0.37 0.99 16 38 H 0.07 1.41 7.03 -51.93 -0.36 1.04 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.88 7.87 -51.93 -0.41 0.47 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.11 2.86 5.34 -51.93 -0.28 2.59 16 43 H 0.04 0.76 8.04 -51.93 -0.42 0.34 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.35 5.34 9.12 45.56 0.42 5.75 16 47 H 0.07 1.48 7.71 -51.93 -0.40 1.08 16 48 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 49 H 0.09 1.33 4.35 -51.93 -0.23 1.11 16 50 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 389.93 15.07 5.88 5.88 Total: -1.00 -33.66 389.93 -8.00 -41.66 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.33 Total: 6.16 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: -0.34 Total: 14.06 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.87 Total: -55.84 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.30 Total: -29.30 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.04 Total: 17.38 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.66 -8.00 -41.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098457110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.517 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds