Wall clock time and date at job start Sat Apr 11 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34415 * 124.35005 * 2 1 4 4 O 1.21280 * 124.94431 * 0.42727 * 3 2 1 5 5 C 1.51280 * 110.11369 * 180.16523 * 3 2 1 6 6 C 1.54625 * 104.19940 * 16.49214 * 5 3 2 7 7 C 1.46759 * 124.34254 * 180.17330 * 2 1 3 8 8 H 1.09002 * 110.04490 * 282.13806 * 7 2 1 9 9 C 1.50702 * 110.39704 * 44.10140 * 7 2 1 10 10 O 1.21274 * 119.99693 * 16.20656 * 9 7 2 11 11 N 1.34778 * 119.99954 * 196.20536 * 9 7 2 12 12 C 1.46922 * 120.63316 * 359.71959 * 11 9 7 13 13 C 1.52756 * 109.01096 * 233.58224 * 12 11 9 14 14 C 1.53038 * 109.38502 * 305.59256 * 13 12 11 15 15 N 1.46496 * 109.46204 * 181.25913 * 14 13 12 16 16 C 1.36932 * 119.99941 * 299.93265 * 15 14 13 17 17 H 1.08005 * 120.00161 * 323.10590 * 16 15 14 18 18 C 1.38812 * 120.00146 * 143.11592 * 16 15 14 19 19 N 1.31623 * 120.00214 * 160.28541 * 18 16 15 20 20 Si 1.86792 * 120.00206 * 340.28122 * 18 16 15 21 21 H 1.48506 * 109.46981 * 95.24533 * 20 18 16 22 22 H 1.48497 * 109.47511 * 215.24822 * 20 18 16 23 23 H 1.48505 * 109.47173 * 335.25013 * 20 18 16 24 24 C 1.46504 * 120.00001 * 119.92859 * 15 14 13 25 25 C 1.52991 * 109.47043 * 86.91546 * 24 15 14 26 26 O 1.42902 * 109.47296 * 63.65490 * 25 24 15 27 27 C 1.53037 * 109.54094 * 61.23642 * 14 13 12 28 28 C 1.46929 * 120.62640 * 179.97438 * 11 9 7 29 29 H 1.09000 * 109.46980 * 0.02657 * 1 2 3 30 30 H 1.09000 * 109.47355 * 120.02577 * 1 2 3 31 31 H 1.09000 * 109.47407 * 240.02407 * 1 2 3 32 32 H 1.08993 * 110.49059 * 135.17408 * 5 3 2 33 33 H 1.09004 * 110.48457 * 257.81920 * 5 3 2 34 34 H 1.09006 * 110.97096 * 93.31989 * 6 5 3 35 35 H 1.08997 * 110.97454 * 217.05069 * 6 5 3 36 36 H 1.09002 * 109.58630 * 353.42206 * 12 11 9 37 37 H 1.09003 * 109.58586 * 113.83694 * 12 11 9 38 38 H 1.09000 * 109.56980 * 185.54974 * 13 12 11 39 39 H 1.09001 * 109.35850 * 65.49767 * 13 12 11 40 40 H 1.09000 * 109.45367 * 301.21550 * 14 13 12 41 41 H 0.96998 * 120.00380 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.47215 * 206.91538 * 24 15 14 43 43 H 1.08998 * 109.47268 * 326.91396 * 24 15 14 44 44 H 1.09007 * 109.47137 * 183.65672 * 25 24 15 45 45 H 1.09005 * 109.47390 * 303.65509 * 25 24 15 46 46 H 0.96703 * 113.99936 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.50052 * 178.68721 * 27 14 13 48 48 H 1.09004 * 109.49712 * 58.58715 * 27 14 13 49 49 H 1.08994 * 109.58501 * 246.15335 * 28 11 9 50 50 H 1.08996 * 109.58467 * 6.44209 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2442 0.0074 5 6 3.6898 0.7377 -0.0041 6 6 3.7030 -0.7481 -0.4321 7 6 2.2930 -1.2118 -0.0037 8 1 2.3260 -1.6447 0.9961 9 6 1.7517 -2.2147 -0.9897 10 8 0.9607 -1.8636 -1.8393 11 7 2.1468 -3.5017 -0.9274 12 6 3.1092 -3.9409 0.0922 13 6 4.2711 -4.6556 -0.5952 14 6 3.7254 -5.7845 -1.4727 15 7 4.8402 -6.4902 -2.1093 16 6 5.6958 -5.8133 -2.9369 17 1 5.3176 -5.0390 -3.5880 18 6 7.0490 -6.1225 -2.9393 19 7 7.8006 -5.7798 -3.9640 20 14 7.8035 -7.0248 -1.4882 21 1 7.8378 -8.4816 -1.7747 22 1 9.1861 -6.5319 -1.2632 23 1 6.9863 -6.7785 -0.2729 24 6 5.0398 -7.9201 -1.8604 25 6 4.2056 -8.7318 -2.8533 26 8 4.6708 -8.4832 -4.1814 27 6 2.8108 -5.1984 -2.5507 28 6 1.6275 -4.4912 -1.8814 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5142 -0.8897 31 1 -0.3634 -0.5134 0.8902 32 1 4.2360 1.3469 -0.7241 33 1 4.1149 0.8511 0.9932 34 1 3.8337 -0.8424 -1.5102 35 1 4.4753 -1.3012 0.1023 36 1 3.4854 -3.0748 0.6367 37 1 2.6205 -4.6263 0.7847 38 1 4.9408 -5.0712 0.1576 39 1 4.8167 -3.9443 -1.2153 40 1 3.1590 -6.4822 -0.8559 41 1 8.7463 -5.9954 -3.9655 42 1 6.0942 -8.1668 -1.9847 43 1 4.7282 -8.1588 -0.8436 44 1 4.3031 -9.7937 -2.6270 45 1 3.1589 -8.4380 -2.7741 46 1 4.1865 -8.9666 -4.8648 47 1 2.4411 -6.0004 -3.1895 48 1 3.3702 -4.4820 -3.1523 49 1 1.0159 -5.2223 -1.3529 50 1 1.0245 -3.9883 -2.6374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098459927.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:22 Heat of formation + Delta-G solvation = -71.967236 kcal Electronic energy + Delta-G solvation = -31707.912061 eV Core-core repulsion = 27543.714637 eV Total energy + Delta-G solvation = -4164.197425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.16814 -39.55578 -37.87596 -36.48978 -36.20046 -34.84322 -33.00625 -32.09096 -31.17015 -30.87144 -28.57253 -27.80691 -26.75416 -25.11836 -23.38632 -22.99277 -22.49037 -21.36925 -20.33417 -19.56760 -18.81089 -17.90232 -16.80122 -16.79070 -16.46880 -16.06188 -15.94490 -15.38266 -15.10852 -14.88905 -14.76221 -14.06982 -14.05540 -13.77300 -13.63364 -13.49652 -13.44266 -13.18642 -12.86884 -12.70796 -12.60247 -12.44919 -12.15951 -12.05280 -12.00901 -11.83806 -11.71657 -11.34065 -11.16559 -10.90709 -10.79482 -10.60071 -10.38658 -10.11892 -10.02298 -9.89471 -9.70079 -9.54362 -9.17939 -8.79823 -8.60142 -8.43892 -6.85354 -5.90163 -3.33201 2.37651 2.44041 2.69650 3.09985 3.30231 3.42170 3.46545 4.06106 4.13459 4.36340 4.54126 4.61904 4.69802 4.74450 4.95197 5.02761 5.06803 5.19358 5.26855 5.32029 5.41170 5.45365 5.46631 5.51586 5.59769 5.62325 5.71840 5.74487 5.79315 5.79973 5.82025 5.93039 6.03474 6.06522 6.08687 6.23009 6.26688 6.33818 6.45013 6.64215 6.67144 6.89025 6.91071 6.93634 7.37091 7.97123 8.07566 8.10711 8.37942 8.45829 8.99393 9.77503 10.12320 11.25916 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.003292 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.600026 B = 8503.404330 C = 9390.545421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.600 5.600 3 C 0.520 3.480 4 O -0.534 6.534 5 C -0.153 4.153 6 C -0.122 4.122 7 C 0.113 3.887 8 H 0.104 0.896 9 C 0.510 3.490 10 O -0.535 6.535 11 N -0.598 5.598 12 C 0.104 3.896 13 C -0.143 4.143 14 C 0.181 3.819 15 N -0.593 5.593 16 C -0.245 4.245 17 H 0.076 0.924 18 C 0.040 3.960 19 N -0.902 5.902 20 Si 0.878 3.122 21 H -0.290 1.290 22 H -0.305 1.305 23 H -0.272 1.272 24 C 0.131 3.869 25 C 0.061 3.939 26 O -0.535 6.535 27 C -0.138 4.138 28 C 0.114 3.886 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.260 0.740 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.022 0.978 45 H 0.031 0.969 46 H 0.354 0.646 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.062 0.938 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.189 1.953 11.380 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.334 5.334 3 C 0.308 3.692 4 O -0.411 6.411 5 C -0.193 4.193 6 C -0.160 4.160 7 C 0.005 3.995 8 H 0.121 0.879 9 C 0.296 3.704 10 O -0.412 6.412 11 N -0.332 5.332 12 C -0.019 4.019 13 C -0.183 4.183 14 C 0.074 3.926 15 N -0.314 5.314 16 C -0.374 4.374 17 H 0.094 0.906 18 C -0.160 4.160 19 N -0.544 5.544 20 Si 0.710 3.290 21 H -0.218 1.218 22 H -0.234 1.234 23 H -0.197 1.197 24 C 0.005 3.995 25 C -0.020 4.020 26 O -0.337 6.337 27 C -0.178 4.178 28 C -0.008 4.008 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.040 0.960 45 H 0.049 0.951 46 H 0.197 0.803 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.080 0.920 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.330 3.143 11.191 16.232 hybrid contribution 0.202 -1.328 0.456 1.419 sum -11.129 1.815 11.647 16.211 Atomic orbital electron populations 1.21746 0.77570 1.03607 1.02578 1.47846 1.06773 1.05802 1.73009 1.20884 0.89342 0.84129 0.74840 1.90716 1.78767 1.20846 1.50784 1.22368 0.94615 0.97224 1.05081 1.22658 0.93822 0.95369 1.04176 1.21669 0.92077 0.86217 0.99488 0.87876 1.20531 0.81767 0.82717 0.85366 1.90664 1.34884 1.78496 1.37169 1.48135 1.44122 1.07856 1.33063 1.21881 0.90420 0.99552 0.90066 1.22298 0.96284 0.99730 0.99955 1.20282 0.88895 0.91921 0.91504 1.44066 1.31254 1.02439 1.53644 1.18499 0.86744 1.18184 1.13922 0.90619 1.25332 0.96295 0.97798 0.96577 1.69845 1.06502 1.49459 1.28581 0.86945 0.77873 0.78719 0.85490 1.21836 1.23401 1.19685 1.21358 0.99066 0.85024 0.94010 1.22892 0.97319 0.96375 0.85376 1.86935 1.60764 1.71053 1.14910 1.22341 0.95643 1.00395 0.99404 1.21722 0.96821 0.90199 0.92102 0.90122 0.89899 0.92595 0.87417 0.87348 0.88896 0.87708 0.90342 0.91484 0.91029 0.90082 0.93175 0.93019 0.91958 0.93162 0.95983 0.95083 0.80305 0.91259 0.90751 0.91988 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 10.50 59.85 0.63 1.61 16 2 N -0.60 -7.26 3.01 -174.02 -0.52 -7.78 16 3 C 0.52 6.81 8.02 -10.86 -0.09 6.72 16 4 O -0.53 -8.91 17.35 5.56 0.10 -8.82 16 5 C -0.15 -1.41 6.86 -26.74 -0.18 -1.59 16 6 C -0.12 -1.13 6.25 -25.10 -0.16 -1.29 16 7 C 0.11 1.17 2.71 -68.16 -0.18 0.98 16 8 H 0.10 0.80 6.98 -51.93 -0.36 0.43 16 9 C 0.51 6.67 6.60 -10.98 -0.07 6.60 16 10 O -0.54 -8.80 13.78 5.56 0.08 -8.72 16 11 N -0.60 -7.34 2.98 -173.01 -0.52 -7.86 16 12 C 0.10 1.08 6.14 -3.94 -0.02 1.06 16 13 C -0.14 -2.07 5.29 -26.84 -0.14 -2.21 16 14 C 0.18 2.96 2.59 -67.89 -0.18 2.78 16 15 N -0.59 -12.37 2.00 -165.62 -0.33 -12.71 16 16 C -0.24 -6.28 8.34 -15.06 -0.13 -6.41 16 17 H 0.08 2.17 7.03 -52.48 -0.37 1.80 16 18 C 0.04 1.09 5.34 -17.43 -0.09 1.00 16 19 N -0.90 -27.02 13.97 55.49 0.78 -26.24 16 20 Si 0.88 21.25 24.82 -169.99 -4.22 17.03 16 21 H -0.29 -7.04 6.70 56.52 0.38 -6.66 16 22 H -0.31 -7.63 7.11 56.52 0.40 -7.23 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.13 2.60 4.73 -4.04 -0.02 2.58 16 25 C 0.06 1.06 7.40 37.15 0.27 1.34 16 26 O -0.54 -10.75 13.22 -35.23 -0.47 -11.22 16 27 C -0.14 -2.18 5.30 -26.59 -0.14 -2.32 16 28 C 0.11 1.49 6.44 -3.68 -0.02 1.47 16 29 H 0.08 0.93 7.53 -51.93 -0.39 0.54 16 30 H 0.08 1.06 6.10 -51.93 -0.32 0.74 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.03 7.91 -51.93 -0.41 0.62 16 35 H 0.10 0.75 7.42 -51.93 -0.39 0.36 16 36 H 0.08 0.63 4.79 -51.93 -0.25 0.38 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.38 7.71 -51.93 -0.40 0.98 16 40 H 0.05 0.73 7.83 -51.93 -0.41 0.32 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.06 1.43 3.12 -51.93 -0.16 1.26 16 43 H 0.05 0.85 7.99 -51.93 -0.41 0.43 16 44 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.35 5.14 9.12 45.56 0.42 5.56 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.07 1.42 7.05 -51.93 -0.37 1.05 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.09 1.24 7.00 -51.93 -0.36 0.87 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -35.64 383.74 -7.00 -42.63 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.14 Total: 5.59 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -0.53 Total: 12.31 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.60 Total: -54.59 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.29 Total: -28.76 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.22 Total: 17.03 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.64 -7.00 -42.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098459927.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.335 kcal (2) G-P(sol) polarization free energy of solvation -35.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds