Wall clock time and date at job start Sat Apr 11 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34415 * 124.35005 * 2 1 4 4 O 1.21280 * 124.94431 * 0.42727 * 3 2 1 5 5 C 1.51280 * 110.11369 * 180.16523 * 3 2 1 6 6 C 1.54625 * 104.19940 * 16.49214 * 5 3 2 7 7 C 1.46759 * 124.34254 * 180.17330 * 2 1 3 8 8 H 1.09002 * 110.04490 * 282.13806 * 7 2 1 9 9 C 1.50702 * 110.39704 * 44.10140 * 7 2 1 10 10 O 1.21274 * 119.99693 * 16.20656 * 9 7 2 11 11 N 1.34778 * 119.99954 * 196.20536 * 9 7 2 12 12 C 1.46922 * 120.63316 * 359.71959 * 11 9 7 13 13 C 1.52756 * 109.01096 * 233.58224 * 12 11 9 14 14 C 1.53038 * 109.38502 * 305.59256 * 13 12 11 15 15 N 1.46496 * 109.46204 * 181.25913 * 14 13 12 16 16 C 1.36932 * 119.99941 * 299.93265 * 15 14 13 17 17 H 1.08005 * 120.00161 * 323.10590 * 16 15 14 18 18 C 1.38812 * 120.00146 * 143.11592 * 16 15 14 19 19 N 1.31623 * 120.00214 * 160.28541 * 18 16 15 20 20 Si 1.86792 * 120.00206 * 340.28122 * 18 16 15 21 21 H 1.48506 * 109.46981 * 95.24533 * 20 18 16 22 22 H 1.48497 * 109.47511 * 215.24822 * 20 18 16 23 23 H 1.48505 * 109.47173 * 335.25013 * 20 18 16 24 24 C 1.46504 * 120.00001 * 119.92859 * 15 14 13 25 25 C 1.52991 * 109.47043 * 86.91546 * 24 15 14 26 26 O 1.42902 * 109.47296 * 63.65490 * 25 24 15 27 27 C 1.53037 * 109.54094 * 61.23642 * 14 13 12 28 28 C 1.46929 * 120.62640 * 179.97438 * 11 9 7 29 29 H 1.09000 * 109.46980 * 0.02657 * 1 2 3 30 30 H 1.09000 * 109.47355 * 120.02577 * 1 2 3 31 31 H 1.09000 * 109.47407 * 240.02407 * 1 2 3 32 32 H 1.08993 * 110.49059 * 135.17408 * 5 3 2 33 33 H 1.09004 * 110.48457 * 257.81920 * 5 3 2 34 34 H 1.09006 * 110.97096 * 93.31989 * 6 5 3 35 35 H 1.08997 * 110.97454 * 217.05069 * 6 5 3 36 36 H 1.09002 * 109.58630 * 353.42206 * 12 11 9 37 37 H 1.09003 * 109.58586 * 113.83694 * 12 11 9 38 38 H 1.09000 * 109.56980 * 185.54974 * 13 12 11 39 39 H 1.09001 * 109.35850 * 65.49767 * 13 12 11 40 40 H 1.09000 * 109.45367 * 301.21550 * 14 13 12 41 41 H 0.96998 * 120.00380 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.47215 * 206.91538 * 24 15 14 43 43 H 1.08998 * 109.47268 * 326.91396 * 24 15 14 44 44 H 1.09007 * 109.47137 * 183.65672 * 25 24 15 45 45 H 1.09005 * 109.47390 * 303.65509 * 25 24 15 46 46 H 0.96703 * 113.99936 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.50052 * 178.68721 * 27 14 13 48 48 H 1.09004 * 109.49712 * 58.58715 * 27 14 13 49 49 H 1.08994 * 109.58501 * 246.15335 * 28 11 9 50 50 H 1.08996 * 109.58467 * 6.44209 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2442 0.0074 5 6 3.6898 0.7377 -0.0041 6 6 3.7030 -0.7481 -0.4321 7 6 2.2930 -1.2118 -0.0037 8 1 2.3260 -1.6447 0.9961 9 6 1.7517 -2.2147 -0.9897 10 8 0.9607 -1.8636 -1.8393 11 7 2.1468 -3.5017 -0.9274 12 6 3.1092 -3.9409 0.0922 13 6 4.2711 -4.6556 -0.5952 14 6 3.7254 -5.7845 -1.4727 15 7 4.8402 -6.4902 -2.1093 16 6 5.6958 -5.8133 -2.9369 17 1 5.3176 -5.0390 -3.5880 18 6 7.0490 -6.1225 -2.9393 19 7 7.8006 -5.7798 -3.9640 20 14 7.8035 -7.0248 -1.4882 21 1 7.8378 -8.4816 -1.7747 22 1 9.1861 -6.5319 -1.2632 23 1 6.9863 -6.7785 -0.2729 24 6 5.0398 -7.9201 -1.8604 25 6 4.2056 -8.7318 -2.8533 26 8 4.6708 -8.4832 -4.1814 27 6 2.8108 -5.1984 -2.5507 28 6 1.6275 -4.4912 -1.8814 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5142 -0.8897 31 1 -0.3634 -0.5134 0.8902 32 1 4.2360 1.3469 -0.7241 33 1 4.1149 0.8511 0.9932 34 1 3.8337 -0.8424 -1.5102 35 1 4.4753 -1.3012 0.1023 36 1 3.4854 -3.0748 0.6367 37 1 2.6205 -4.6263 0.7847 38 1 4.9408 -5.0712 0.1576 39 1 4.8167 -3.9443 -1.2153 40 1 3.1590 -6.4822 -0.8559 41 1 8.7463 -5.9954 -3.9655 42 1 6.0942 -8.1668 -1.9847 43 1 4.7282 -8.1588 -0.8436 44 1 4.3031 -9.7937 -2.6270 45 1 3.1589 -8.4380 -2.7741 46 1 4.1865 -8.9666 -4.8648 47 1 2.4411 -6.0004 -3.1895 48 1 3.3702 -4.4820 -3.1523 49 1 1.0159 -5.2223 -1.3529 50 1 1.0245 -3.9883 -2.6374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098459927.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:21 Heat of formation + Delta-G solvation = -100.590020 kcal Electronic energy + Delta-G solvation = -31709.153238 eV Core-core repulsion = 27543.714637 eV Total energy + Delta-G solvation = -4165.438602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.12178 -40.61731 -39.19661 -37.79739 -37.27860 -36.31006 -34.04258 -33.64504 -32.60736 -32.03812 -29.76830 -29.13290 -27.63548 -26.57548 -24.79065 -24.10637 -23.46801 -22.67671 -21.63790 -20.69176 -19.87183 -18.88245 -18.33794 -18.09640 -17.71627 -17.19507 -17.03273 -16.96101 -16.29627 -16.18346 -15.82396 -15.37643 -15.14333 -14.87760 -14.78173 -14.69011 -14.58708 -14.48305 -14.27932 -14.11151 -13.70276 -13.49120 -13.39413 -13.29729 -13.08693 -12.96088 -12.85257 -12.68743 -12.45696 -12.20708 -12.11256 -12.02774 -11.79472 -11.65244 -11.28581 -11.20025 -11.08501 -10.90850 -10.65467 -10.45363 -9.78264 -9.57698 -8.61783 -7.99463 -5.37226 1.38723 1.39941 1.45162 1.46422 1.57740 1.78324 2.17608 2.56259 3.14792 3.20870 3.29995 3.41657 3.55158 3.77002 3.87872 3.94037 4.04528 4.14990 4.26968 4.33071 4.34614 4.38185 4.45240 4.50252 4.56305 4.60979 4.69517 4.71130 4.76069 4.81442 4.83302 4.84518 4.89520 4.94327 4.96106 4.99606 5.10566 5.13062 5.23563 5.34061 5.49130 5.64550 5.68255 5.97490 6.11746 6.35276 6.40027 6.99309 7.11723 7.12301 7.22061 7.83098 8.19871 9.21586 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.003292 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.600026 B = 8503.404330 C = 9390.545421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.604 5.604 3 C 0.508 3.492 4 O -0.581 6.581 5 C -0.142 4.142 6 C -0.119 4.119 7 C 0.116 3.884 8 H 0.147 0.853 9 C 0.505 3.495 10 O -0.577 6.577 11 N -0.598 5.598 12 C 0.109 3.891 13 C -0.138 4.138 14 C 0.174 3.826 15 N -0.603 5.603 16 C -0.206 4.206 17 H 0.027 0.973 18 C -0.028 4.028 19 N -0.964 5.964 20 Si 0.946 3.054 21 H -0.293 1.293 22 H -0.323 1.323 23 H -0.237 1.237 24 C 0.118 3.882 25 C 0.060 3.940 26 O -0.579 6.579 27 C -0.126 4.126 28 C 0.124 3.876 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.065 0.935 35 H 0.137 0.863 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.031 0.969 43 H 0.093 0.907 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.375 0.625 47 H 0.060 0.940 48 H 0.025 0.975 49 H 0.096 0.904 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.410 0.102 15.796 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.337 5.337 3 C 0.297 3.703 4 O -0.461 6.461 5 C -0.182 4.182 6 C -0.157 4.157 7 C 0.009 3.991 8 H 0.165 0.835 9 C 0.293 3.707 10 O -0.457 6.457 11 N -0.330 5.330 12 C -0.013 4.013 13 C -0.178 4.178 14 C 0.068 3.932 15 N -0.325 5.325 16 C -0.336 4.336 17 H 0.045 0.955 18 C -0.222 4.222 19 N -0.611 5.611 20 Si 0.777 3.223 21 H -0.221 1.221 22 H -0.253 1.253 23 H -0.160 1.160 24 C -0.007 4.007 25 C -0.020 4.020 26 O -0.384 6.384 27 C -0.166 4.166 28 C 0.001 3.999 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.160 0.840 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.221 0.779 47 H 0.079 0.921 48 H 0.044 0.956 49 H 0.114 0.886 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.604 1.231 15.657 20.138 hybrid contribution 0.431 -0.795 -1.058 1.392 sum -12.173 0.436 14.599 19.014 Atomic orbital electron populations 1.21731 0.77623 1.03120 1.03011 1.48043 1.07155 1.06374 1.72120 1.21586 0.91068 0.83642 0.73961 1.90686 1.79839 1.22614 1.52994 1.22405 0.91888 0.96854 1.07031 1.22709 0.94123 0.95832 1.02990 1.21921 0.91693 0.84854 1.00615 0.83535 1.21074 0.81158 0.83180 0.85278 1.90661 1.36923 1.79150 1.38980 1.48219 1.44166 1.07504 1.33097 1.22045 0.88599 1.01295 0.89358 1.22185 0.97742 0.98486 0.99384 1.20592 0.87585 0.93155 0.91849 1.44180 1.31329 1.03429 1.53542 1.18197 0.87136 1.15928 1.12386 0.95549 1.25963 0.97023 1.00179 0.99014 1.70026 1.06415 1.53371 1.31266 0.85843 0.76293 0.76947 0.83249 1.22143 1.25299 1.15991 1.21579 0.97884 0.84250 0.97015 1.22928 0.97685 0.97777 0.83573 1.86863 1.62311 1.72291 1.16934 1.22160 0.96263 0.99134 0.99053 1.21560 0.95410 0.90654 0.92322 0.91109 0.91715 0.89806 0.87348 0.83998 0.91633 0.84533 0.87136 0.87839 0.90360 0.93708 0.89360 0.93828 0.95100 0.88950 0.92952 0.92991 0.77866 0.92102 0.95568 0.88619 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.89 10.50 127.77 1.34 3.23 16 2 N -0.60 -13.62 3.01 -823.06 -2.48 -16.10 16 3 C 0.51 12.79 8.02 87.90 0.71 13.49 16 4 O -0.58 -19.55 17.35 -3.03 -0.05 -19.61 16 5 C -0.14 -2.29 6.86 30.59 0.21 -2.08 16 6 C -0.12 -1.89 6.25 31.65 0.20 -1.69 16 7 C 0.12 2.02 2.71 44.70 0.12 2.14 16 8 H 0.15 1.36 6.98 -2.39 -0.02 1.35 16 9 C 0.51 12.25 6.60 87.66 0.58 12.82 16 10 O -0.58 -18.99 13.78 -3.01 -0.04 -19.03 16 11 N -0.60 -12.85 2.98 -819.67 -2.44 -15.29 16 12 C 0.11 1.69 6.14 86.22 0.53 2.22 16 13 C -0.14 -3.53 5.29 30.53 0.16 -3.37 16 14 C 0.17 5.16 2.59 45.02 0.12 5.27 16 15 N -0.60 -24.16 2.00 -677.91 -1.36 -25.52 16 16 C -0.21 -10.85 8.34 84.03 0.70 -10.14 16 17 H 0.03 1.64 7.03 -2.91 -0.02 1.62 16 18 C -0.03 -1.57 5.34 84.86 0.45 -1.12 16 19 N -0.96 -60.82 13.97 21.65 0.30 -60.52 16 20 Si 0.95 44.23 24.82 68.60 1.70 45.93 16 21 H -0.29 -13.66 6.70 99.48 0.67 -13.00 16 22 H -0.32 -15.83 7.11 99.48 0.71 -15.12 16 23 H -0.24 -9.53 7.11 99.48 0.71 -8.82 16 24 C 0.12 4.27 4.73 86.38 0.41 4.68 16 25 C 0.06 1.90 7.40 71.98 0.53 2.43 16 26 O -0.58 -22.89 13.22 -148.98 -1.97 -24.86 16 27 C -0.13 -3.91 5.30 30.69 0.16 -3.75 16 28 C 0.12 2.98 6.44 86.38 0.56 3.54 16 29 H 0.07 1.66 7.53 -2.39 -0.02 1.64 16 30 H 0.06 1.67 6.10 -2.39 -0.01 1.65 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.14 1.37 8.14 -2.38 -0.02 1.36 16 34 H 0.06 1.43 7.91 -2.38 -0.02 1.41 16 35 H 0.14 1.33 7.42 -2.39 -0.02 1.31 16 36 H 0.11 1.05 4.79 -2.39 -0.01 1.04 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.04 1.47 7.71 -2.39 -0.02 1.46 16 40 H 0.09 2.03 7.83 -2.39 -0.02 2.01 16 41 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.03 1.34 3.12 -2.39 -0.01 1.33 16 43 H 0.09 2.57 7.99 -2.39 -0.02 2.55 16 44 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 45 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.37 10.63 9.12 -74.06 -0.68 9.96 16 47 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.03 1.04 7.05 -2.38 -0.02 1.03 16 49 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.07 1.92 7.00 -2.39 -0.02 1.90 16 Total: -1.00 -86.35 383.74 0.69 -85.66 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.24 Total: 21.66 kcal Atomic # 6 Polarization: 20.90 SS G_CDS: 6.78 Total: 27.67 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -5.97 Total: -117.43 kcal Atomic # 8 Polarization: -61.43 SS G_CDS: -2.06 Total: -63.49 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.70 Total: 45.93 kcal Total: -86.35 0.69 -85.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098459927.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.930 kcal (2) G-P(sol) polarization free energy of solvation -86.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds