Wall clock time and date at job start Sat Apr 11 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34774 * 120.00122 * 2 1 4 4 O 1.21284 * 119.99931 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00193 * 179.97438 * 3 2 1 6 6 C 1.50703 * 109.47308 * 180.02562 * 5 3 2 7 7 O 1.21277 * 120.00274 * 0.02562 * 6 5 3 8 8 N 1.34774 * 120.00052 * 180.02562 * 6 5 3 9 9 C 1.46505 * 120.00372 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.49308 * 34.99715 * 9 8 6 11 11 C 1.53194 * 109.52509 * 274.91776 * 9 8 6 12 12 N 1.46934 * 108.81098 * 185.37473 * 11 9 8 13 13 C 1.36940 * 120.63879 * 233.60510 * 12 11 9 14 14 H 1.08000 * 120.00438 * 27.63924 * 13 12 11 15 15 C 1.38814 * 119.99651 * 207.64217 * 13 12 11 16 16 N 1.31613 * 120.00293 * 17.34928 * 15 13 12 17 17 Si 1.86800 * 119.99755 * 197.34861 * 15 13 12 18 18 H 1.48499 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46865 * 119.99891 * 17 15 13 20 20 H 1.48499 * 109.47221 * 239.99952 * 17 15 13 21 21 C 1.46952 * 118.71778 * 53.62039 * 12 11 9 22 22 C 1.53079 * 108.75836 * 306.49712 * 21 12 11 23 23 C 1.53066 * 109.53478 * 174.72460 * 22 21 12 24 24 C 1.53110 * 109.17328 * 176.70396 * 23 22 21 25 25 O 1.42901 * 109.41100 * 302.53250 * 24 23 22 26 26 C 1.42915 * 114.12664 * 61.18089 * 25 24 23 27 27 C 1.53095 * 109.47696 * 294.44311 * 22 21 12 28 28 C 1.52953 * 109.48365 * 54.54472 * 22 21 12 29 29 H 1.09004 * 109.47343 * 59.99517 * 1 2 3 30 30 H 1.08998 * 109.47354 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47457 * 299.99484 * 1 2 3 32 32 H 0.97007 * 119.99952 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47412 * 60.00502 * 5 3 2 34 34 H 1.09004 * 109.47317 * 300.00513 * 5 3 2 35 35 H 0.97004 * 120.00069 * 0.02562 * 8 6 5 36 36 H 1.08998 * 109.57906 * 305.17034 * 11 9 8 37 37 H 1.08994 * 109.58339 * 65.57805 * 11 9 8 38 38 H 0.96996 * 120.00190 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.58939 * 186.70896 * 21 12 11 40 40 H 1.09001 * 109.70552 * 66.35160 * 21 12 11 41 41 H 1.09003 * 109.52228 * 296.61092 * 23 22 21 42 42 H 1.09000 * 109.52641 * 56.79731 * 23 22 21 43 43 H 1.09002 * 109.48878 * 182.54892 * 24 23 22 44 44 H 1.09001 * 109.48239 * 62.50931 * 24 23 22 45 45 H 1.09000 * 109.48342 * 178.82037 * 26 25 24 46 46 H 1.08997 * 109.48280 * 58.77573 * 26 25 24 47 47 H 1.09003 * 109.51709 * 303.14449 * 27 22 21 48 48 H 1.09004 * 109.51861 * 63.32677 * 27 22 21 49 49 H 1.09000 * 109.46405 * 178.71629 * 28 22 21 50 50 H 1.08995 * 109.45280 * 58.74325 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1481 2.5880 0.0011 7 8 3.3601 3.5099 0.0015 8 7 5.4732 2.8343 0.0011 9 6 5.9616 4.2155 0.0022 10 1 5.2894 4.8386 0.5921 11 6 6.0155 4.7406 -1.4359 12 7 6.6271 6.0766 -1.4298 13 6 5.9878 7.1395 -2.0103 14 1 4.9098 7.1519 -2.0743 15 6 6.7255 8.2008 -2.5166 16 7 8.0114 8.0540 -2.7551 17 14 5.8928 9.8375 -2.8594 18 1 4.4530 9.7436 -2.5083 19 1 6.5329 10.8992 -2.0418 20 1 6.0309 10.1710 -4.2998 21 6 7.9382 6.2501 -0.7892 22 6 7.8635 5.7064 0.6399 23 6 9.2530 5.7573 1.2801 24 6 9.1539 5.2894 2.7346 25 8 8.2185 6.1116 3.4353 26 6 6.8904 6.0640 2.9097 27 6 6.8982 6.5638 1.4625 28 6 7.3655 4.2605 0.6102 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.9499 -0.8401 -0.0004 33 1 4.0095 0.6532 -0.8892 34 1 4.0088 0.6535 0.8908 35 1 6.1035 2.0970 0.0005 36 1 6.6150 4.0672 -2.0484 37 1 5.0052 4.8033 -1.8400 38 1 8.5269 8.7958 -3.1085 39 1 8.1956 7.3090 -0.7644 40 1 8.6963 5.7027 -1.3494 41 1 9.9307 5.1025 0.7322 42 1 9.6301 6.7795 1.2513 43 1 10.1323 5.3665 3.2088 44 1 8.8177 4.2529 2.7609 45 1 6.2388 6.6988 3.5101 46 1 6.5249 5.0375 2.9378 47 1 7.2236 7.6038 1.4380 48 1 5.8946 6.4852 1.0445 49 1 7.3342 3.8662 1.6259 50 1 8.0423 3.6558 0.0066 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099576818.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:29 Heat of formation + Delta-G solvation = -122.430826 kcal Electronic energy + Delta-G solvation = -31649.007813 eV Core-core repulsion = 27482.622123 eV Total energy + Delta-G solvation = -4166.385690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.67505 -41.01322 -39.66571 -38.29901 -35.92478 -35.46501 -35.06023 -33.25408 -32.18217 -31.96781 -30.21576 -28.67283 -27.30869 -27.21926 -24.55421 -24.54161 -23.62857 -22.29690 -21.53199 -21.19652 -19.45234 -18.67582 -18.32310 -17.93029 -17.44699 -16.94557 -16.84208 -16.61231 -16.44387 -16.22433 -16.03400 -15.64098 -15.41652 -15.15473 -15.10367 -14.91386 -14.52114 -14.39600 -14.19514 -13.93524 -13.79864 -13.21051 -13.10045 -13.04577 -13.00290 -12.84315 -12.74959 -12.67087 -12.33854 -12.16889 -12.09090 -11.91854 -11.81775 -11.59319 -11.17288 -11.10938 -10.94122 -10.60903 -10.43534 -10.25423 -10.06566 -10.01473 -8.67617 -7.92430 -5.36103 1.38222 1.40984 1.51740 1.68984 1.81948 1.94933 2.45015 2.62912 3.03934 3.20939 3.56863 3.64530 3.76874 3.88850 3.96606 4.13554 4.18402 4.20787 4.27082 4.35103 4.41173 4.44573 4.45614 4.51873 4.57436 4.58979 4.64125 4.77268 4.78931 4.88364 4.91798 4.97521 4.98983 5.02127 5.13698 5.19696 5.29097 5.32819 5.45569 5.50451 5.55499 5.63171 5.65466 5.75690 6.33625 6.35501 6.63585 6.74048 7.11939 7.37678 7.52736 7.82165 8.30766 9.12439 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.003804 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.667722 B = 7358.005559 C = 9293.298623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.722 5.722 3 C 0.497 3.503 4 O -0.563 6.563 5 C -0.148 4.148 6 C 0.498 3.502 7 O -0.561 6.561 8 N -0.708 5.708 9 C 0.143 3.857 10 H 0.058 0.942 11 C 0.144 3.856 12 N -0.600 5.600 13 C -0.260 4.260 14 H 0.046 0.954 15 C -0.038 4.038 16 N -0.925 5.925 17 Si 0.955 3.045 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.286 1.286 21 C 0.193 3.807 22 C -0.072 4.072 23 C -0.136 4.136 24 C 0.062 3.938 25 O -0.400 6.400 26 C 0.070 3.930 27 C -0.130 4.130 28 C -0.096 4.096 29 H 0.039 0.961 30 H 0.116 0.884 31 H 0.042 0.958 32 H 0.423 0.577 33 H 0.163 0.837 34 H 0.170 0.830 35 H 0.418 0.582 36 H 0.024 0.976 37 H 0.022 0.978 38 H 0.251 0.749 39 H 0.051 0.949 40 H 0.004 0.996 41 H 0.088 0.912 42 H 0.051 0.949 43 H 0.110 0.890 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.039 0.961 48 H 0.054 0.946 49 H 0.087 0.913 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 -23.567 11.050 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.377 5.377 3 C 0.283 3.717 4 O -0.439 6.439 5 C -0.190 4.190 6 C 0.284 3.716 7 O -0.437 6.437 8 N -0.363 5.363 9 C 0.036 3.964 10 H 0.076 0.924 11 C 0.017 3.983 12 N -0.323 5.323 13 C -0.391 4.391 14 H 0.064 0.936 15 C -0.234 4.234 16 N -0.571 5.571 17 Si 0.783 3.217 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.213 1.213 21 C 0.068 3.932 22 C -0.074 4.074 23 C -0.174 4.174 24 C -0.014 4.014 25 O -0.319 6.319 26 C -0.006 4.006 27 C -0.167 4.167 28 C -0.134 4.134 29 H 0.058 0.942 30 H 0.135 0.865 31 H 0.061 0.939 32 H 0.260 0.740 33 H 0.180 0.820 34 H 0.187 0.813 35 H 0.256 0.744 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.022 0.978 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.128 0.872 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.106 0.894 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.069 -21.933 11.125 24.680 hybrid contribution -0.256 0.889 -1.219 1.531 sum -2.326 -21.043 9.906 23.374 Atomic orbital electron populations 1.21599 0.79444 1.04118 1.00789 1.45648 1.07945 1.08406 1.75674 1.20769 0.90844 0.83862 0.76235 1.90890 1.70963 1.33207 1.48860 1.21634 0.92138 0.94576 1.10656 1.20921 0.82413 0.92155 0.76152 1.90890 1.56098 1.47907 1.48828 1.45825 1.06701 1.08359 1.75379 1.21199 0.95902 0.82653 0.96639 0.92430 1.21234 0.95284 0.86740 0.95037 1.44106 1.20255 1.03738 1.64198 1.19309 0.90139 0.97838 1.31792 0.93579 1.25564 0.96684 1.02211 0.98970 1.70141 1.07561 1.31211 1.48140 0.85401 0.78144 0.80845 0.77284 1.20310 1.21121 1.21315 1.20648 0.84990 0.99221 0.88356 1.21000 0.95205 0.95038 0.96183 1.22105 0.95887 1.02156 0.97259 1.22769 0.93640 0.94198 0.90763 1.87865 1.19316 1.68987 1.55774 1.22557 0.84056 1.00999 0.93037 1.22010 0.99928 0.98814 0.95996 1.21723 0.94060 0.96055 1.01564 0.94211 0.86536 0.93888 0.73981 0.81995 0.81310 0.74422 0.95849 0.95955 0.93944 0.93086 0.97819 0.89359 0.93016 0.87152 0.91060 0.89053 0.91974 0.94260 0.92717 0.89426 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.70 127.77 1.37 2.51 16 2 N -0.72 -9.40 5.71 -484.54 -2.77 -12.17 16 3 C 0.50 11.48 7.82 87.66 0.69 12.17 16 4 O -0.56 -21.62 14.18 20.40 0.29 -21.33 16 5 C -0.15 -2.15 6.19 29.10 0.18 -1.97 16 6 C 0.50 14.19 7.79 87.66 0.68 14.88 16 7 O -0.56 -24.60 13.84 20.42 0.28 -24.32 16 8 N -0.71 -17.12 5.08 -442.13 -2.25 -19.37 16 9 C 0.14 4.85 2.27 45.07 0.10 4.96 16 10 H 0.06 2.40 5.71 -2.39 -0.01 2.38 16 11 C 0.14 6.37 6.09 86.36 0.53 6.90 16 12 N -0.60 -31.04 2.50 -699.23 -1.75 -32.79 16 13 C -0.26 -15.35 9.59 84.03 0.81 -14.55 16 14 H 0.05 2.85 7.89 -2.91 -0.02 2.82 16 15 C -0.04 -2.22 4.91 84.86 0.42 -1.81 16 16 N -0.92 -55.32 11.19 21.65 0.24 -55.08 16 17 Si 0.95 47.69 29.59 68.60 2.03 49.72 16 18 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 19 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 21 C 0.19 9.08 3.99 86.32 0.34 9.43 16 22 C -0.07 -2.51 0.51 -52.12 -0.03 -2.54 16 23 C -0.14 -3.89 4.92 30.65 0.15 -3.74 16 24 C 0.06 1.44 6.57 72.02 0.47 1.91 16 25 O -0.40 -11.69 10.76 -148.98 -1.60 -13.29 16 26 C 0.07 2.08 6.57 72.02 0.47 2.56 16 27 C -0.13 -4.87 4.47 30.66 0.14 -4.74 16 28 C -0.10 -2.68 3.64 30.60 0.11 -2.56 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.42 1.40 8.83 -92.70 -0.82 0.58 16 33 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.17 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.42 5.82 8.60 -92.71 -0.80 5.02 16 36 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.02 1.11 7.93 -2.39 -0.02 1.09 16 38 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.05 2.80 6.04 -2.39 -0.01 2.79 16 40 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.07 1.32 6.59 -2.39 -0.02 1.31 16 45 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 46 H 0.06 1.65 6.64 -2.39 -0.02 1.63 16 47 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.05 2.38 5.91 -2.38 -0.01 2.37 16 49 H 0.09 1.94 5.03 -2.39 -0.01 1.93 16 50 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -92.63 383.54 0.26 -92.37 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -0.65 Total: 12.84 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: 6.43 Total: 23.40 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -6.52 Total: -119.39 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -1.03 Total: -58.94 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -92.63 0.26 -92.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099576818.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.061 kcal (2) G-P(sol) polarization free energy of solvation -92.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds