Wall clock time and date at job start Sat Apr 11 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00020 * 2 1 4 4 C 1.52996 * 109.47168 * 179.97438 * 3 2 1 5 5 C 1.50700 * 112.85201 * 305.00802 * 4 3 2 6 6 O 1.21277 * 120.00214 * 111.01084 * 5 4 3 7 7 N 1.34774 * 119.99757 * 291.00232 * 5 4 3 8 8 C 1.47083 * 120.88129 * 174.93359 * 7 5 4 9 9 C 1.53235 * 108.52168 * 231.16242 * 8 7 5 10 10 N 1.46905 * 109.34221 * 306.17256 * 9 8 7 11 11 C 1.46895 * 110.99850 * 187.25081 * 10 9 8 12 12 C 1.50702 * 109.47069 * 65.69859 * 11 10 9 13 13 O 1.21293 * 120.00070 * 359.97438 * 12 11 10 14 14 N 1.34781 * 120.00027 * 179.97438 * 12 11 10 15 15 C 1.37094 * 120.00280 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99482 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00275 * 180.02562 * 15 14 12 18 18 N 1.31412 * 119.99824 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47464 * 89.99773 * 19 17 15 21 21 H 1.48498 * 109.47092 * 209.99978 * 19 17 15 22 22 H 1.48500 * 109.47207 * 329.99890 * 19 17 15 23 23 C 1.46900 * 111.26857 * 63.10385 * 10 9 8 24 24 C 1.47083 * 120.88091 * 354.91455 * 7 5 4 25 25 C 1.53785 * 113.68644 * 76.27261 * 4 3 2 26 26 C 1.53781 * 87.08282 * 89.12722 * 25 4 3 27 27 C 1.53780 * 113.61629 * 173.80346 * 4 3 2 28 28 H 1.09004 * 109.46817 * 299.99584 * 1 2 3 29 29 H 1.09006 * 109.47437 * 59.99331 * 1 2 3 30 30 H 1.08993 * 109.47312 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46969 * 60.00774 * 3 2 1 32 32 H 1.08992 * 109.47456 * 300.00508 * 3 2 1 33 33 H 1.08992 * 109.62939 * 350.87327 * 8 7 5 34 34 H 1.09000 * 109.62811 * 111.45714 * 8 7 5 35 35 H 1.09006 * 109.49062 * 66.12980 * 9 8 7 36 36 H 1.08997 * 109.49817 * 186.20797 * 9 8 7 37 37 H 1.08997 * 109.46956 * 185.69492 * 11 10 9 38 38 H 1.08994 * 109.47491 * 305.69788 * 11 10 9 39 39 H 0.96997 * 119.99767 * 0.02562 * 14 12 11 40 40 H 0.97000 * 119.99569 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.49258 * 176.93712 * 23 10 9 42 42 H 1.08994 * 109.49422 * 56.85329 * 23 10 9 43 43 H 1.09005 * 109.62342 * 248.54610 * 24 7 5 44 44 H 1.08998 * 109.63068 * 8.92810 * 24 7 5 45 45 H 1.09004 * 113.61775 * 203.67600 * 25 4 3 46 46 H 1.09000 * 113.61617 * 334.57861 * 25 4 3 47 47 H 1.09003 * 113.61330 * 270.88408 * 26 25 4 48 48 H 1.09003 * 113.69233 * 139.98843 * 26 25 4 49 49 H 1.08997 * 113.61044 * 25.35471 * 27 4 3 50 50 H 1.09002 * 113.61700 * 156.17143 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0555 0.3445 1.1385 6 8 4.5542 -0.7381 0.9143 7 7 3.9665 0.7962 2.4051 8 6 4.3656 -0.0517 3.5388 9 6 3.2246 -0.0657 4.5615 10 7 2.8698 1.3157 4.9137 11 6 1.9000 1.3452 6.0166 12 6 2.5440 0.8029 7.2665 13 8 3.6972 0.4281 7.2409 14 7 1.8384 0.7343 8.4128 15 6 2.4240 0.2404 9.5497 16 1 3.4509 -0.0933 9.5269 17 6 1.6964 0.1692 10.7313 18 7 0.4467 0.5747 10.7589 19 14 2.4946 -0.5031 12.2806 20 1 3.1322 0.6083 13.0313 21 1 1.4608 -1.1458 13.1311 22 1 3.5254 -1.5062 11.9111 23 6 2.3624 2.0495 3.7467 24 6 3.4681 2.1503 2.6905 25 6 4.1255 0.8025 -1.3671 26 6 4.1918 2.3085 -1.6713 27 6 4.2602 2.5324 -0.1514 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6887 1.8464 0.8901 32 1 1.6886 1.8464 -0.8898 33 1 4.5556 -1.0661 3.1883 34 1 5.2659 0.3539 4.0003 35 1 2.3567 -0.5658 4.1314 36 1 3.5450 -0.5985 5.4568 37 1 1.5782 2.3721 6.1899 38 1 1.0365 0.7326 5.7576 39 1 0.9160 1.0336 8.4331 40 1 -0.0610 0.5253 11.5839 41 1 2.0578 3.0509 4.0510 42 1 1.5067 1.5201 3.3279 43 1 4.2823 2.7675 3.0704 44 1 3.0680 2.5930 1.7784 45 1 5.1040 0.3265 -1.3030 46 1 3.4300 0.2583 -2.0060 47 1 3.2846 2.7016 -2.1302 48 1 5.0974 2.6094 -2.1981 49 1 3.6735 3.3847 0.1912 50 1 5.2750 2.5298 0.2465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113117993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:04 Heat of formation + Delta-G solvation = -71.678396 kcal Electronic energy + Delta-G solvation = -31051.172175 eV Core-core repulsion = 26886.987275 eV Total energy + Delta-G solvation = -4164.184900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19019 -39.14100 -38.16743 -37.45467 -36.98918 -34.48497 -33.74084 -31.37804 -31.15946 -29.51401 -28.69231 -26.64250 -26.08572 -25.71885 -24.60762 -23.82513 -23.36816 -21.52969 -19.63979 -19.26302 -18.65810 -17.88853 -17.51280 -16.61779 -16.38961 -16.07054 -16.03345 -15.61799 -15.08679 -14.85294 -14.79540 -14.71925 -14.52661 -14.16437 -13.90038 -13.81365 -13.60954 -13.14501 -12.91786 -12.67932 -12.57703 -12.38942 -12.13771 -11.96848 -11.64009 -11.60051 -11.53013 -11.46240 -11.32015 -11.12601 -10.96897 -10.86228 -10.80500 -10.61754 -10.40180 -10.23096 -10.02229 -9.54253 -9.45381 -8.79009 -8.35509 -7.99801 -7.89810 -6.43278 -3.83973 2.63231 2.94974 3.17060 3.25966 3.29094 3.31798 3.87128 3.91705 4.03420 4.21902 4.27058 4.35770 4.47551 4.55537 4.81191 4.87082 4.90953 4.98523 5.00649 5.07371 5.10930 5.13997 5.19600 5.23275 5.30530 5.37219 5.41002 5.42666 5.47566 5.52062 5.63818 5.69990 5.74280 5.80016 5.81948 5.84415 5.90795 6.03156 6.18657 6.23958 6.26936 6.59675 6.80479 7.15363 7.30967 7.47717 7.54065 8.04787 8.21809 8.59864 9.16635 9.52563 10.04046 10.74462 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.002370 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.462895 B =11810.575623 C =12177.664021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.087 3.913 4 C -0.107 4.107 5 C 0.539 3.461 6 O -0.537 6.537 7 N -0.610 5.610 8 C 0.121 3.879 9 C 0.041 3.959 10 N -0.513 5.513 11 C 0.047 3.953 12 C 0.443 3.557 13 O -0.577 6.577 14 N -0.564 5.564 15 C -0.298 4.298 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C 0.039 3.961 24 C 0.108 3.892 25 C -0.106 4.106 26 C -0.143 4.143 27 C -0.122 4.122 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.026 0.974 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.086 0.914 42 H 0.033 0.967 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 7.099 -23.988 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.010 3.990 4 C -0.110 4.110 5 C 0.326 3.674 6 O -0.414 6.414 7 N -0.343 5.343 8 C -0.001 4.001 9 C -0.087 4.087 10 N -0.238 5.238 11 C -0.085 4.085 12 C 0.229 3.771 13 O -0.461 6.461 14 N -0.200 5.200 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.090 4.090 24 C -0.015 4.015 25 C -0.144 4.144 26 C -0.181 4.181 27 C -0.160 4.160 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.045 0.955 36 H 0.133 0.867 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.051 0.949 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.630 6.311 -23.791 24.621 hybrid contribution -1.467 -0.161 0.786 1.672 sum -0.838 6.150 -23.005 23.827 Atomic orbital electron populations 1.22762 0.80721 1.03096 0.99892 1.87987 1.19744 1.26795 1.95334 1.22293 0.90119 0.85676 1.00910 1.22096 0.94908 0.97946 0.96095 1.20070 0.78197 0.86171 0.82925 1.90661 1.44872 1.22130 1.83720 1.48166 1.64627 1.15628 1.05894 1.21722 0.97696 0.95757 0.84884 1.22651 0.96658 0.89352 1.00042 1.61518 1.41499 1.15169 1.05569 1.21847 0.93218 1.01760 0.91630 1.19708 0.87680 0.85259 0.84484 1.90487 1.17580 1.53145 1.84882 1.41869 1.14072 1.55982 1.08096 1.19696 0.98820 1.38000 0.86249 0.87878 1.25260 0.95550 0.97642 0.99496 1.69612 1.08440 1.47522 1.28786 0.85859 0.78593 0.79065 0.80794 1.20390 1.20955 1.19401 1.22504 0.95588 0.99533 0.91415 1.22027 0.97411 0.83801 0.98279 1.22763 1.02059 0.96149 0.93417 1.22904 1.02585 0.96784 0.95787 1.23054 1.01118 0.94571 0.97242 0.93978 0.94032 0.89414 0.92380 0.92068 0.89122 0.90484 0.95537 0.86709 0.89255 0.93520 0.77522 0.91879 0.89615 0.94892 0.90329 0.89446 0.88972 0.90542 0.89894 0.90688 0.90248 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.43 10.33 -35.23 -0.36 -4.80 16 3 C 0.09 0.78 4.92 37.16 0.18 0.96 16 4 C -0.11 -1.07 0.46 -154.85 -0.07 -1.15 16 5 C 0.54 7.59 6.32 -10.99 -0.07 7.52 16 6 O -0.54 -9.67 15.71 5.56 0.09 -9.58 16 7 N -0.61 -8.20 3.01 -172.46 -0.52 -8.72 16 8 C 0.12 1.88 6.58 -3.60 -0.02 1.86 16 9 C 0.04 0.69 5.26 -3.70 -0.02 0.67 16 10 N -0.51 -8.25 4.37 -235.77 -1.03 -9.28 16 11 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 12 C 0.44 10.20 7.44 -10.98 -0.08 10.12 16 13 O -0.58 -15.11 13.91 5.55 0.08 -15.03 16 14 N -0.56 -14.04 5.29 -10.96 -0.06 -14.09 16 15 C -0.30 -8.21 9.68 -14.94 -0.14 -8.35 16 16 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 19 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 23 C 0.04 0.46 5.62 -3.70 -0.02 0.44 16 24 C 0.11 1.14 5.46 -3.60 -0.02 1.12 16 25 C -0.11 -1.00 6.89 -25.92 -0.18 -1.18 16 26 C -0.14 -0.91 7.73 -25.92 -0.20 -1.11 16 27 C -0.12 -0.87 5.65 -25.92 -0.15 -1.01 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.47 6.20 -51.93 -0.32 0.15 16 32 H 0.06 0.41 7.32 -51.93 -0.38 0.03 16 33 H 0.09 1.48 7.10 -51.93 -0.37 1.11 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.12 2.30 5.76 -51.93 -0.30 2.00 16 37 H 0.09 1.36 7.97 -51.93 -0.41 0.95 16 38 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 39 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.09 0.85 7.99 -51.93 -0.41 0.44 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 0.69 3.11 -51.93 -0.16 0.53 16 45 H 0.09 0.99 7.78 -51.93 -0.40 0.59 16 46 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 47 H 0.08 0.42 7.61 -51.93 -0.40 0.03 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.41 7.11 -51.93 -0.37 0.04 16 50 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -33.87 391.28 -8.02 -41.89 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.01 Total: 8.86 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 0.20 Total: 12.54 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.88 Total: -55.71 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.20 Total: -29.41 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.87 -8.02 -41.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113117993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.788 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds