Wall clock time and date at job start Sat Apr 11 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00020 * 2 1 4 4 C 1.52996 * 109.47168 * 179.97438 * 3 2 1 5 5 C 1.50700 * 112.85201 * 305.00802 * 4 3 2 6 6 O 1.21277 * 120.00214 * 111.01084 * 5 4 3 7 7 N 1.34774 * 119.99757 * 291.00232 * 5 4 3 8 8 C 1.47083 * 120.88129 * 174.93359 * 7 5 4 9 9 C 1.53235 * 108.52168 * 231.16242 * 8 7 5 10 10 N 1.46905 * 109.34221 * 306.17256 * 9 8 7 11 11 C 1.46895 * 110.99850 * 187.25081 * 10 9 8 12 12 C 1.50702 * 109.47069 * 65.69859 * 11 10 9 13 13 O 1.21293 * 120.00070 * 359.97438 * 12 11 10 14 14 N 1.34781 * 120.00027 * 179.97438 * 12 11 10 15 15 C 1.37094 * 120.00280 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99482 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00275 * 180.02562 * 15 14 12 18 18 N 1.31412 * 119.99824 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47464 * 89.99773 * 19 17 15 21 21 H 1.48498 * 109.47092 * 209.99978 * 19 17 15 22 22 H 1.48500 * 109.47207 * 329.99890 * 19 17 15 23 23 C 1.46900 * 111.26857 * 63.10385 * 10 9 8 24 24 C 1.47083 * 120.88091 * 354.91455 * 7 5 4 25 25 C 1.53785 * 113.68644 * 76.27261 * 4 3 2 26 26 C 1.53781 * 87.08282 * 89.12722 * 25 4 3 27 27 C 1.53780 * 113.61629 * 173.80346 * 4 3 2 28 28 H 1.09004 * 109.46817 * 299.99584 * 1 2 3 29 29 H 1.09006 * 109.47437 * 59.99331 * 1 2 3 30 30 H 1.08993 * 109.47312 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46969 * 60.00774 * 3 2 1 32 32 H 1.08992 * 109.47456 * 300.00508 * 3 2 1 33 33 H 1.08992 * 109.62939 * 350.87327 * 8 7 5 34 34 H 1.09000 * 109.62811 * 111.45714 * 8 7 5 35 35 H 1.09006 * 109.49062 * 66.12980 * 9 8 7 36 36 H 1.08997 * 109.49817 * 186.20797 * 9 8 7 37 37 H 1.08997 * 109.46956 * 185.69492 * 11 10 9 38 38 H 1.08994 * 109.47491 * 305.69788 * 11 10 9 39 39 H 0.96997 * 119.99767 * 0.02562 * 14 12 11 40 40 H 0.97000 * 119.99569 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.49258 * 176.93712 * 23 10 9 42 42 H 1.08994 * 109.49422 * 56.85329 * 23 10 9 43 43 H 1.09005 * 109.62342 * 248.54610 * 24 7 5 44 44 H 1.08998 * 109.63068 * 8.92810 * 24 7 5 45 45 H 1.09004 * 113.61775 * 203.67600 * 25 4 3 46 46 H 1.09000 * 113.61617 * 334.57861 * 25 4 3 47 47 H 1.09003 * 113.61330 * 270.88408 * 26 25 4 48 48 H 1.09003 * 113.69233 * 139.98843 * 26 25 4 49 49 H 1.08997 * 113.61044 * 25.35471 * 27 4 3 50 50 H 1.09002 * 113.61700 * 156.17143 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0555 0.3445 1.1385 6 8 4.5542 -0.7381 0.9143 7 7 3.9665 0.7962 2.4051 8 6 4.3656 -0.0517 3.5388 9 6 3.2246 -0.0657 4.5615 10 7 2.8698 1.3157 4.9137 11 6 1.9000 1.3452 6.0166 12 6 2.5440 0.8029 7.2665 13 8 3.6972 0.4281 7.2409 14 7 1.8384 0.7343 8.4128 15 6 2.4240 0.2404 9.5497 16 1 3.4509 -0.0933 9.5269 17 6 1.6964 0.1692 10.7313 18 7 0.4467 0.5747 10.7589 19 14 2.4946 -0.5031 12.2806 20 1 3.1322 0.6083 13.0313 21 1 1.4608 -1.1458 13.1311 22 1 3.5254 -1.5062 11.9111 23 6 2.3624 2.0495 3.7467 24 6 3.4681 2.1503 2.6905 25 6 4.1255 0.8025 -1.3671 26 6 4.1918 2.3085 -1.6713 27 6 4.2602 2.5324 -0.1514 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6887 1.8464 0.8901 32 1 1.6886 1.8464 -0.8898 33 1 4.5556 -1.0661 3.1883 34 1 5.2659 0.3539 4.0003 35 1 2.3567 -0.5658 4.1314 36 1 3.5450 -0.5985 5.4568 37 1 1.5782 2.3721 6.1899 38 1 1.0365 0.7326 5.7576 39 1 0.9160 1.0336 8.4331 40 1 -0.0610 0.5253 11.5839 41 1 2.0578 3.0509 4.0510 42 1 1.5067 1.5201 3.3279 43 1 4.2823 2.7675 3.0704 44 1 3.0680 2.5930 1.7784 45 1 5.1040 0.3265 -1.3030 46 1 3.4300 0.2583 -2.0060 47 1 3.2846 2.7016 -2.1302 48 1 5.0974 2.6094 -2.1981 49 1 3.6735 3.3847 0.1912 50 1 5.2750 2.5298 0.2465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113117993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:03 Heat of formation + Delta-G solvation = -97.497956 kcal Electronic energy + Delta-G solvation = -31052.291795 eV Core-core repulsion = 26886.987275 eV Total energy + Delta-G solvation = -4165.304520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.08496 -40.52989 -39.41836 -38.54846 -37.94048 -36.08234 -35.38435 -33.27848 -32.37739 -30.48334 -29.74662 -27.60373 -27.15602 -26.60573 -25.78591 -25.08513 -24.41451 -22.57027 -21.07765 -20.53013 -19.89744 -19.53823 -18.39130 -17.78888 -17.46736 -17.18424 -16.92956 -16.62145 -16.51660 -16.29369 -16.08436 -15.80003 -15.47828 -15.36389 -15.30499 -15.28521 -14.98832 -14.20068 -14.03473 -13.67800 -13.50583 -13.44272 -13.27768 -13.14002 -12.98906 -12.78691 -12.75437 -12.42725 -12.38968 -12.32479 -12.27798 -12.17220 -12.11845 -12.07340 -11.45570 -11.42746 -11.24899 -10.78401 -10.50009 -10.28633 -9.99750 -9.76847 -9.23927 -8.46281 -5.94251 1.37542 1.41487 1.53706 1.58309 1.91314 2.06581 2.28410 2.64504 2.72099 3.20799 3.27697 3.35431 3.61331 3.67290 3.80342 3.85057 3.92490 3.97490 4.08821 4.16834 4.26645 4.32336 4.36676 4.43276 4.45252 4.48881 4.52247 4.55156 4.58330 4.60414 4.70366 4.78552 4.81203 4.83286 4.84139 4.86538 5.01820 5.04630 5.13427 5.16674 5.39624 5.41739 5.47703 5.79837 6.01651 6.13857 6.18761 6.43812 6.61614 7.13984 7.14177 7.57794 8.13768 8.71149 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.002370 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.462895 B =11810.575623 C =12177.664021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.084 3.916 4 C -0.111 4.111 5 C 0.531 3.469 6 O -0.590 6.590 7 N -0.609 5.609 8 C 0.129 3.871 9 C 0.053 3.947 10 N -0.527 5.527 11 C 0.059 3.941 12 C 0.441 3.559 13 O -0.614 6.614 14 N -0.574 5.574 15 C -0.330 4.330 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.921 5.921 19 Si 0.990 3.010 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.275 1.275 23 C 0.038 3.962 24 C 0.107 3.893 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.115 4.115 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.063 0.937 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.118 0.882 42 H 0.040 0.960 43 H 0.085 0.915 44 H 0.123 0.877 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.107 0.893 48 H 0.084 0.916 49 H 0.111 0.889 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 10.055 -25.397 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C 0.008 3.992 4 C -0.115 4.115 5 C 0.321 3.679 6 O -0.470 6.470 7 N -0.341 5.341 8 C 0.005 3.995 9 C -0.076 4.076 10 N -0.252 5.252 11 C -0.071 4.071 12 C 0.228 3.772 13 O -0.500 6.500 14 N -0.212 5.212 15 C -0.460 4.460 16 H 0.096 0.904 17 C -0.212 4.212 18 N -0.562 5.562 19 Si 0.814 3.186 20 H -0.196 1.196 21 H -0.196 1.196 22 H -0.200 1.200 23 C -0.090 4.090 24 C -0.015 4.015 25 C -0.156 4.156 26 C -0.161 4.161 27 C -0.153 4.153 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.139 0.861 38 H 0.081 0.919 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.136 0.864 42 H 0.058 0.942 43 H 0.103 0.897 44 H 0.141 0.859 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.125 0.875 48 H 0.103 0.897 49 H 0.129 0.871 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.968 9.316 -25.214 26.898 hybrid contribution -0.952 -1.121 1.162 1.874 sum -1.919 8.195 -24.052 25.483 Atomic orbital electron populations 1.22883 0.79302 1.03366 1.01243 1.87951 1.21508 1.28693 1.95640 1.22485 0.88712 0.85068 1.02930 1.22314 0.96205 0.98986 0.93954 1.20974 0.77166 0.85962 0.83806 1.90630 1.47183 1.24636 1.84518 1.48259 1.64261 1.16475 1.05134 1.21412 0.96973 0.95521 0.85551 1.22359 0.96766 0.90011 0.98438 1.61479 1.42053 1.14525 1.07147 1.21736 0.93081 1.03260 0.89066 1.20790 0.87220 0.83566 0.85615 1.90473 1.19515 1.54227 1.85745 1.41929 1.14353 1.56665 1.08253 1.19627 0.98324 1.39926 0.88082 0.90417 1.25991 0.96049 0.97445 1.01757 1.69666 1.09089 1.47669 1.29742 0.84968 0.77834 0.78447 0.77347 1.19566 1.19620 1.19984 1.22698 0.96035 1.00424 0.89876 1.22297 0.97412 0.82166 0.99580 1.22793 1.00628 0.98608 0.93540 1.22873 1.04242 0.93538 0.95476 1.23091 1.00747 0.93581 0.97845 0.93357 0.91811 0.89897 0.91147 0.88973 0.90904 0.91370 0.95757 0.90615 0.86118 0.91933 0.77014 0.91351 0.86435 0.94192 0.89715 0.85905 0.91451 0.91134 0.87490 0.89738 0.87061 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -9.11 10.33 -148.98 -1.54 -10.65 16 3 C 0.08 1.23 4.92 71.98 0.35 1.59 16 4 C -0.11 -2.01 0.46 -52.40 -0.02 -2.04 16 5 C 0.53 14.97 6.32 87.66 0.55 15.52 16 6 O -0.59 -22.39 15.71 -3.02 -0.05 -22.43 16 7 N -0.61 -16.04 3.01 -817.94 -2.46 -18.50 16 8 C 0.13 4.18 6.58 86.35 0.57 4.75 16 9 C 0.05 1.84 5.26 86.38 0.45 2.29 16 10 N -0.53 -16.26 4.37 -899.84 -3.93 -20.19 16 11 C 0.06 1.96 5.45 85.56 0.47 2.43 16 12 C 0.44 20.55 7.44 87.66 0.65 21.20 16 13 O -0.61 -33.36 13.91 -3.07 -0.04 -33.40 16 14 N -0.57 -29.08 5.29 -306.98 -1.62 -30.71 16 15 C -0.33 -18.65 9.68 84.04 0.81 -17.83 16 16 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 17 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 18 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 19 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 C 0.04 0.76 5.62 86.38 0.49 1.24 16 24 C 0.11 1.94 5.46 86.35 0.47 2.41 16 25 C -0.12 -2.10 6.89 31.12 0.21 -1.89 16 26 C -0.12 -1.14 7.73 31.12 0.24 -0.89 16 27 C -0.12 -1.22 5.65 31.12 0.18 -1.04 16 28 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 0.83 6.20 -2.38 -0.01 0.81 16 32 H 0.09 0.79 7.32 -2.39 -0.02 0.77 16 33 H 0.07 2.59 7.10 -2.39 -0.02 2.57 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.02 0.83 8.14 -2.38 -0.02 0.82 16 36 H 0.08 3.23 5.76 -2.39 -0.01 3.22 16 37 H 0.12 3.27 7.97 -2.39 -0.02 3.25 16 38 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 39 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 40 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 41 H 0.12 1.71 7.99 -2.39 -0.02 1.69 16 42 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.12 1.35 3.11 -2.39 -0.01 1.34 16 45 H 0.07 1.52 7.78 -2.38 -0.02 1.50 16 46 H 0.07 1.30 8.10 -2.39 -0.02 1.29 16 47 H 0.11 0.53 7.61 -2.39 -0.02 0.51 16 48 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.11 0.50 7.11 -2.39 -0.02 0.48 16 50 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 Total: -1.00 -78.47 391.28 0.03 -78.44 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.22 Total: 32.28 kcal Atomic # 6 Polarization: 22.03 SS G_CDS: 7.14 Total: 29.17 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -7.74 Total: -118.51 kcal Atomic # 8 Polarization: -64.86 SS G_CDS: -1.63 Total: -66.49 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -78.47 0.03 -78.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113117993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.054 kcal (2) G-P(sol) polarization free energy of solvation -78.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds