Wall clock time and date at job start Sat Apr 11 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00057 * 2 1 4 4 C 1.53005 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47047 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46878 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00327 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99570 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00559 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47253 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46988 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00072 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99786 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99684 * 180.02562 * 13 11 10 15 15 H 1.08996 * 115.51888 * 350.57654 * 14 13 11 16 16 C 1.53005 * 117.44091 * 205.16796 * 14 13 11 17 17 H 1.09005 * 119.53765 * 4.11346 * 16 14 13 18 18 C 1.54387 * 118.12264 * 159.21080 * 16 14 13 19 19 N 1.51697 * 102.89502 * 88.04840 * 18 16 14 20 20 C 1.36934 * 127.61393 * 140.54279 * 19 18 16 21 21 H 1.08004 * 120.00185 * 194.72190 * 20 19 18 22 22 C 1.38814 * 120.00166 * 14.71567 * 20 19 18 23 23 N 1.31626 * 119.99614 * 9.01907 * 22 20 19 24 24 Si 1.86796 * 120.00114 * 189.01354 * 22 20 19 25 25 H 1.48502 * 109.46932 * 90.00351 * 24 22 20 26 26 H 1.48496 * 109.47073 * 210.00098 * 24 22 20 27 27 H 1.48496 * 109.47139 * 330.00357 * 24 22 20 28 28 C 1.48147 * 104.54760 * 320.31045 * 19 18 16 29 29 C 1.53005 * 117.44284 * 136.00031 * 14 13 11 30 30 H 1.08999 * 119.54072 * 355.87991 * 29 14 13 31 31 H 1.09008 * 109.47128 * 300.00117 * 1 2 3 32 32 H 1.08997 * 109.46960 * 59.99682 * 1 2 3 33 33 H 1.08999 * 109.47271 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47464 * 60.00322 * 3 2 1 35 35 H 1.09008 * 109.47260 * 299.99950 * 3 2 1 36 36 H 1.08997 * 109.46675 * 59.99773 * 4 3 2 37 37 H 1.08998 * 109.46919 * 300.00189 * 4 3 2 38 38 H 1.08998 * 109.47678 * 300.00045 * 5 4 3 39 39 H 1.08997 * 109.46839 * 60.00226 * 5 4 3 40 40 H 0.97005 * 120.00354 * 0.02562 * 6 5 4 41 41 H 1.08998 * 109.46991 * 300.00616 * 9 7 6 42 42 H 1.09006 * 109.46686 * 59.99950 * 9 7 6 43 43 H 1.09006 * 109.46562 * 299.99738 * 10 9 7 44 44 H 1.08993 * 109.47276 * 59.99698 * 10 9 7 45 45 H 0.96998 * 120.00490 * 359.97438 * 13 11 10 46 46 H 1.09003 * 110.40378 * 205.97532 * 18 16 14 47 47 H 1.08998 * 110.40690 * 328.40720 * 18 16 14 48 48 H 0.96999 * 119.99104 * 179.97438 * 23 22 20 49 49 H 1.08998 * 110.40753 * 281.03049 * 28 19 18 50 50 H 1.09002 * 110.40549 * 158.59709 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5824 -0.0013 6 7 5.6182 2.4667 -0.0013 7 6 6.3822 3.5770 -0.0023 8 8 5.8606 4.6720 -0.0028 9 6 7.8845 3.4580 -0.0029 10 6 8.5068 4.8557 -0.0034 11 6 10.0091 4.7367 -0.0047 12 8 10.5307 3.6418 -0.0046 13 7 10.7730 5.8470 -0.0058 14 6 12.2334 5.7313 -0.0076 15 1 12.6251 4.7269 0.1532 16 6 13.0341 6.9008 0.5687 17 1 12.5076 7.7424 1.0190 18 6 14.4832 6.6337 1.0296 19 7 15.2879 6.8575 -0.2368 20 6 16.5069 7.4699 -0.3551 21 1 16.8648 7.7773 -1.3267 22 6 17.2828 7.6957 0.7736 23 7 16.9345 7.1677 1.9279 24 14 18.8211 8.7486 0.6543 25 1 18.4709 10.1679 0.9155 26 1 19.8136 8.2906 1.6594 27 1 19.4015 8.6244 -0.7069 28 6 14.4625 6.2606 -1.3125 29 6 13.0124 6.6491 -0.9520 30 1 12.4698 7.3031 -1.6345 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.6887 1.8464 0.8900 35 1 1.6886 1.8464 -0.8900 36 1 3.8567 0.6439 -0.8908 37 1 3.8575 0.6435 0.8891 38 1 3.8358 3.1231 -0.8912 39 1 3.8365 3.1234 0.8887 40 1 6.0354 1.5909 -0.0013 41 1 8.2065 2.9176 0.8872 42 1 8.2057 2.9165 -0.8928 43 1 8.1848 5.3964 -0.8935 44 1 8.1855 5.3968 0.8865 45 1 10.3559 6.7227 -0.0062 46 1 14.7753 7.3488 1.7987 47 1 14.5821 5.6136 1.4006 48 1 17.4769 7.3252 2.7165 49 1 14.5747 5.1764 -1.3205 50 1 14.7387 6.6793 -2.2802 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115102993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:09 Heat of formation + Delta-G solvation = -69.516118 kcal Electronic energy + Delta-G solvation = -27685.517232 eV Core-core repulsion = 23521.426096 eV Total energy + Delta-G solvation = -4164.091136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.32030 -39.62642 -38.56043 -38.20569 -35.90199 -34.37525 -33.23549 -32.62372 -32.16256 -30.16434 -27.85563 -27.13394 -26.50848 -25.53342 -24.50818 -22.31608 -21.80531 -20.71753 -20.47510 -19.92317 -19.19690 -17.81641 -17.22343 -16.96009 -16.86275 -16.41317 -16.29158 -16.19621 -15.90595 -15.37247 -15.31329 -14.68926 -14.50347 -14.19910 -13.76537 -13.40350 -13.29408 -13.17063 -12.79345 -12.71379 -12.55200 -12.46189 -12.22623 -12.15519 -11.70169 -11.69984 -11.55064 -11.45127 -11.38323 -11.00102 -10.82392 -10.43299 -10.27328 -10.21722 -10.19775 -10.13285 -9.83203 -9.66285 -9.52838 -9.19459 -8.73876 -8.33139 -6.87097 -5.78031 -3.11197 2.30341 2.55814 2.62738 3.13150 3.34221 3.39946 3.44813 3.46747 4.26776 4.30604 4.32135 4.43833 4.47994 4.50016 4.71887 4.75876 4.78485 4.82542 4.84875 4.91574 4.91710 5.11041 5.13007 5.16514 5.34897 5.36691 5.39285 5.46688 5.51134 5.56572 5.58005 5.66807 5.80028 5.90632 5.97115 6.15680 6.23848 6.53847 6.53922 6.69854 6.80188 6.90135 7.04901 7.31312 7.52083 7.57776 7.70812 7.83514 8.15902 8.26863 9.07560 9.74003 10.50712 11.36984 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.057010 B = 0.001256 C = 0.001254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.021295 B =22287.554909 C =22330.787873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.733 5.733 7 C 0.516 3.484 8 O -0.542 6.542 9 C -0.124 4.124 10 C -0.124 4.124 11 C 0.515 3.485 12 O -0.543 6.543 13 N -0.697 5.697 14 C 0.094 3.906 15 H 0.132 0.868 16 C -0.178 4.178 17 H 0.102 0.898 18 C 0.185 3.815 19 N -0.598 5.598 20 C -0.225 4.225 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.917 5.917 24 Si 0.912 3.088 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.158 3.842 29 C -0.183 4.183 30 H 0.103 0.897 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.404 0.596 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.400 0.600 46 H 0.092 0.908 47 H 0.032 0.968 48 H 0.254 0.746 49 H 0.026 0.974 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.660 -10.863 -3.465 33.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.170 4.170 5 C -0.002 4.002 6 N -0.386 5.386 7 C 0.303 3.697 8 O -0.418 6.418 9 C -0.165 4.165 10 C -0.165 4.165 11 C 0.302 3.698 12 O -0.421 6.421 13 N -0.345 5.345 14 C -0.012 4.012 15 H 0.149 0.851 16 C -0.200 4.200 17 H 0.120 0.880 18 C 0.061 3.939 19 N -0.323 5.323 20 C -0.353 4.353 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.564 5.564 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.032 3.968 29 C -0.205 4.205 30 H 0.121 0.879 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.239 0.761 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.234 0.766 46 H 0.110 0.890 47 H 0.050 0.950 48 H 0.064 0.936 49 H 0.044 0.956 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -31.315 -10.940 -3.339 33.339 hybrid contribution 0.410 0.907 -0.019 0.995 sum -30.905 -10.033 -3.358 32.666 Atomic orbital electron populations 1.22765 0.80593 1.02983 1.00160 1.87861 1.20060 1.27783 1.95481 1.22378 0.93211 0.84951 1.00788 1.21685 0.94025 0.96929 1.04358 1.21162 0.79874 0.96404 1.02769 1.45959 1.06665 1.09516 1.76439 1.20793 0.89791 0.83953 0.75191 1.90718 1.75343 1.26564 1.49222 1.21367 0.90064 0.98806 1.06234 1.21356 0.91162 0.98047 1.05896 1.20570 0.89202 0.84325 0.75752 1.90706 1.75179 1.26498 1.49678 1.45403 1.06147 1.08818 1.74169 1.21884 0.77675 0.97834 1.03777 0.85080 1.24578 0.99771 0.98673 0.96937 0.88036 1.21683 0.82269 0.99672 0.90315 1.46032 1.18720 1.66109 1.01423 1.19032 0.92041 1.30161 0.94115 0.90512 1.24862 0.98467 1.00833 0.96155 1.69888 1.40071 1.46790 0.99612 0.86113 0.82398 0.80016 0.77202 1.21568 1.21664 1.20580 1.21061 0.87067 0.95761 0.92949 1.24367 0.98663 1.03520 0.93904 0.87928 0.93909 0.93909 0.89445 0.92830 0.92847 0.90196 0.90177 0.91207 0.91202 0.76113 0.87794 0.87824 0.88139 0.88082 0.76590 0.88980 0.95011 0.93580 0.95626 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.65 10.70 -35.23 -0.38 -3.03 16 3 C 0.06 0.31 5.94 37.16 0.22 0.53 16 4 C -0.13 -0.58 5.70 -26.73 -0.15 -0.73 16 5 C 0.12 0.69 5.67 -4.04 -0.02 0.67 16 6 N -0.73 -4.53 5.56 -60.30 -0.33 -4.86 16 7 C 0.52 4.59 7.83 -10.99 -0.09 4.50 16 8 O -0.54 -6.71 15.98 5.55 0.09 -6.62 16 9 C -0.12 -1.03 4.99 -27.89 -0.14 -1.17 16 10 C -0.12 -1.17 4.99 -27.88 -0.14 -1.31 16 11 C 0.51 6.70 7.83 -10.99 -0.09 6.61 16 12 O -0.54 -9.02 15.55 5.56 0.09 -8.94 16 13 N -0.70 -9.10 5.56 -53.80 -0.30 -9.40 16 14 C 0.09 1.57 5.97 -67.92 -0.41 1.17 16 15 H 0.13 2.49 7.40 -51.93 -0.38 2.10 16 16 C -0.18 -3.34 6.96 -89.29 -0.62 -3.96 16 17 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 18 C 0.19 4.44 5.92 -0.37 0.00 4.43 16 19 N -0.60 -15.37 3.45 -165.82 -0.57 -15.95 16 20 C -0.23 -6.30 10.36 -15.06 -0.16 -6.45 16 21 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 22 C -0.01 -0.18 5.42 -17.43 -0.09 -0.27 16 23 N -0.92 -26.86 10.82 55.49 0.60 -26.25 16 24 Si 0.91 21.96 29.56 -169.99 -5.03 16.93 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.16 3.36 7.05 -2.41 -0.02 3.35 16 29 C -0.18 -3.26 7.05 -89.29 -0.63 -3.89 16 30 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.04 0.14 8.14 -51.92 -0.42 -0.29 16 32 H 0.04 0.14 8.14 -51.93 -0.42 -0.29 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.05 0.22 8.14 -51.92 -0.42 -0.20 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.40 1.55 8.47 -40.82 -0.35 1.21 16 41 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 42 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 43 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 44 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 45 H 0.40 4.13 8.83 -40.82 -0.36 3.77 16 46 H 0.09 2.44 6.57 -51.93 -0.34 2.10 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 49 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 415.00 15.07 6.25 6.25 Total: -1.00 -35.26 415.00 -9.38 -44.64 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -8.58 Total: 2.51 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.22 Total: 4.70 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.61 Total: -56.46 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.20 Total: -18.58 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.26 -9.38 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115102993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.875 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds