Wall clock time and date at job start Sat Apr 11 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00057 * 2 1 4 4 C 1.53005 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47047 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46878 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00327 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99570 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00559 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47253 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46988 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00072 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99786 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99684 * 180.02562 * 13 11 10 15 15 H 1.08996 * 115.51888 * 350.57654 * 14 13 11 16 16 C 1.53005 * 117.44091 * 205.16796 * 14 13 11 17 17 H 1.09005 * 119.53765 * 4.11346 * 16 14 13 18 18 C 1.54387 * 118.12264 * 159.21080 * 16 14 13 19 19 N 1.51697 * 102.89502 * 88.04840 * 18 16 14 20 20 C 1.36934 * 127.61393 * 140.54279 * 19 18 16 21 21 H 1.08004 * 120.00185 * 194.72190 * 20 19 18 22 22 C 1.38814 * 120.00166 * 14.71567 * 20 19 18 23 23 N 1.31626 * 119.99614 * 9.01907 * 22 20 19 24 24 Si 1.86796 * 120.00114 * 189.01354 * 22 20 19 25 25 H 1.48502 * 109.46932 * 90.00351 * 24 22 20 26 26 H 1.48496 * 109.47073 * 210.00098 * 24 22 20 27 27 H 1.48496 * 109.47139 * 330.00357 * 24 22 20 28 28 C 1.48147 * 104.54760 * 320.31045 * 19 18 16 29 29 C 1.53005 * 117.44284 * 136.00031 * 14 13 11 30 30 H 1.08999 * 119.54072 * 355.87991 * 29 14 13 31 31 H 1.09008 * 109.47128 * 300.00117 * 1 2 3 32 32 H 1.08997 * 109.46960 * 59.99682 * 1 2 3 33 33 H 1.08999 * 109.47271 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47464 * 60.00322 * 3 2 1 35 35 H 1.09008 * 109.47260 * 299.99950 * 3 2 1 36 36 H 1.08997 * 109.46675 * 59.99773 * 4 3 2 37 37 H 1.08998 * 109.46919 * 300.00189 * 4 3 2 38 38 H 1.08998 * 109.47678 * 300.00045 * 5 4 3 39 39 H 1.08997 * 109.46839 * 60.00226 * 5 4 3 40 40 H 0.97005 * 120.00354 * 0.02562 * 6 5 4 41 41 H 1.08998 * 109.46991 * 300.00616 * 9 7 6 42 42 H 1.09006 * 109.46686 * 59.99950 * 9 7 6 43 43 H 1.09006 * 109.46562 * 299.99738 * 10 9 7 44 44 H 1.08993 * 109.47276 * 59.99698 * 10 9 7 45 45 H 0.96998 * 120.00490 * 359.97438 * 13 11 10 46 46 H 1.09003 * 110.40378 * 205.97532 * 18 16 14 47 47 H 1.08998 * 110.40690 * 328.40720 * 18 16 14 48 48 H 0.96999 * 119.99104 * 179.97438 * 23 22 20 49 49 H 1.08998 * 110.40753 * 281.03049 * 28 19 18 50 50 H 1.09002 * 110.40549 * 158.59709 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5824 -0.0013 6 7 5.6182 2.4667 -0.0013 7 6 6.3822 3.5770 -0.0023 8 8 5.8606 4.6720 -0.0028 9 6 7.8845 3.4580 -0.0029 10 6 8.5068 4.8557 -0.0034 11 6 10.0091 4.7367 -0.0047 12 8 10.5307 3.6418 -0.0046 13 7 10.7730 5.8470 -0.0058 14 6 12.2334 5.7313 -0.0076 15 1 12.6251 4.7269 0.1532 16 6 13.0341 6.9008 0.5687 17 1 12.5076 7.7424 1.0190 18 6 14.4832 6.6337 1.0296 19 7 15.2879 6.8575 -0.2368 20 6 16.5069 7.4699 -0.3551 21 1 16.8648 7.7773 -1.3267 22 6 17.2828 7.6957 0.7736 23 7 16.9345 7.1677 1.9279 24 14 18.8211 8.7486 0.6543 25 1 18.4709 10.1679 0.9155 26 1 19.8136 8.2906 1.6594 27 1 19.4015 8.6244 -0.7069 28 6 14.4625 6.2606 -1.3125 29 6 13.0124 6.6491 -0.9520 30 1 12.4698 7.3031 -1.6345 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.6887 1.8464 0.8900 35 1 1.6886 1.8464 -0.8900 36 1 3.8567 0.6439 -0.8908 37 1 3.8575 0.6435 0.8891 38 1 3.8358 3.1231 -0.8912 39 1 3.8365 3.1234 0.8887 40 1 6.0354 1.5909 -0.0013 41 1 8.2065 2.9176 0.8872 42 1 8.2057 2.9165 -0.8928 43 1 8.1848 5.3964 -0.8935 44 1 8.1855 5.3968 0.8865 45 1 10.3559 6.7227 -0.0062 46 1 14.7753 7.3488 1.7987 47 1 14.5821 5.6136 1.4006 48 1 17.4769 7.3252 2.7165 49 1 14.5747 5.1764 -1.3205 50 1 14.7387 6.6793 -2.2802 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115102993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:08 Heat of formation + Delta-G solvation = -95.560115 kcal Electronic energy + Delta-G solvation = -27686.646585 eV Core-core repulsion = 23521.426096 eV Total energy + Delta-G solvation = -4165.220489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.25068 -40.65003 -39.64248 -38.94442 -36.46277 -35.96834 -34.36449 -33.88202 -32.78894 -31.92694 -28.90539 -28.38424 -27.67567 -26.73460 -25.22083 -23.43546 -22.69786 -21.94539 -21.60755 -20.95004 -20.77943 -18.84985 -18.62053 -17.74874 -17.52067 -17.39300 -17.21531 -16.97093 -16.71108 -16.46822 -16.05743 -15.74614 -15.59424 -15.20656 -15.12685 -14.78615 -14.61502 -14.22250 -14.02737 -13.70680 -13.34707 -13.31296 -13.15600 -13.09271 -12.91866 -12.85301 -12.71922 -12.69334 -12.16361 -12.13166 -12.06177 -12.05280 -12.01516 -11.82771 -11.62009 -11.00767 -10.94838 -10.82484 -10.67827 -10.63976 -10.10786 -9.68394 -8.92483 -7.90382 -5.25864 1.47675 1.49408 1.56392 1.58392 1.62469 1.85363 2.24920 2.49930 2.87215 2.90586 3.30612 3.51987 3.59022 3.84081 3.91039 3.94422 3.94941 4.01362 4.14553 4.15386 4.16578 4.21038 4.39011 4.44324 4.49527 4.50994 4.52962 4.56563 4.66950 4.71376 4.85756 4.86594 4.89193 4.92777 4.99801 5.00124 5.09279 5.11373 5.28627 5.41532 5.43780 5.45795 5.55956 5.65270 6.13394 6.19902 6.50351 6.55460 6.96516 7.21217 7.25274 7.66084 8.45930 9.24173 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.057010 B = 0.001256 C = 0.001254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.021295 B =22287.554909 C =22330.787873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.060 3.940 4 C -0.121 4.121 5 C 0.124 3.876 6 N -0.721 5.721 7 C 0.518 3.482 8 O -0.579 6.579 9 C -0.121 4.121 10 C -0.113 4.113 11 C 0.517 3.483 12 O -0.580 6.580 13 N -0.686 5.686 14 C 0.118 3.882 15 H 0.107 0.893 16 C -0.180 4.180 17 H 0.124 0.876 18 C 0.187 3.813 19 N -0.622 5.622 20 C -0.241 4.241 21 H 0.082 0.918 22 C -0.062 4.062 23 N -0.949 5.949 24 Si 0.980 3.020 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.268 1.268 28 C 0.151 3.849 29 C -0.167 4.167 30 H 0.134 0.866 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.417 0.583 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.418 0.582 46 H 0.060 0.940 47 H 0.006 0.994 48 H 0.250 0.750 49 H 0.018 0.982 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.518 -10.436 -4.580 35.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.017 4.017 4 C -0.159 4.159 5 C 0.000 4.000 6 N -0.374 5.374 7 C 0.306 3.694 8 O -0.459 6.459 9 C -0.161 4.161 10 C -0.153 4.153 11 C 0.306 3.694 12 O -0.460 6.460 13 N -0.336 5.336 14 C 0.011 3.989 15 H 0.125 0.875 16 C -0.201 4.201 17 H 0.142 0.858 18 C 0.063 3.937 19 N -0.348 5.348 20 C -0.369 4.369 21 H 0.100 0.900 22 C -0.255 4.255 23 N -0.597 5.597 24 Si 0.808 3.192 25 H -0.211 1.211 26 H -0.221 1.221 27 H -0.193 1.193 28 C 0.025 3.975 29 C -0.189 4.189 30 H 0.152 0.848 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.254 0.746 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.255 0.745 46 H 0.078 0.922 47 H 0.024 0.976 48 H 0.059 0.941 49 H 0.036 0.964 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -33.225 -10.534 -4.483 35.142 hybrid contribution 0.938 0.661 0.308 1.188 sum -32.287 -9.874 -4.175 34.020 Atomic orbital electron populations 1.22918 0.79456 1.03789 1.00905 1.87816 1.21472 1.28780 1.95648 1.22463 0.93312 0.84531 1.01399 1.21571 0.93814 0.96009 1.04536 1.21154 0.79437 0.97064 1.02303 1.45898 1.06925 1.09605 1.74985 1.20825 0.89999 0.83874 0.74713 1.90705 1.75929 1.27943 1.51297 1.21337 0.89619 0.98324 1.06804 1.21321 0.87917 0.99071 1.07028 1.21197 0.90520 0.83430 0.74295 1.90702 1.76106 1.27959 1.51233 1.45254 1.04259 1.10099 1.73976 1.21398 0.79758 0.95851 1.01919 0.87470 1.24263 0.97450 1.00680 0.97677 0.85790 1.21415 0.85619 0.97166 0.89514 1.46348 1.18906 1.66459 1.03060 1.19435 0.93118 1.29956 0.94432 0.90022 1.25701 1.01664 1.02324 0.95859 1.70088 1.41220 1.48290 1.00123 0.85057 0.78576 0.78150 0.77414 1.21109 1.22149 1.19261 1.21198 0.88717 0.95143 0.92407 1.24274 0.97081 1.03962 0.93534 0.84789 0.93181 0.93144 0.88716 0.92272 0.92231 0.89957 0.90009 0.91646 0.91730 0.74641 0.87370 0.87191 0.86785 0.87003 0.74487 0.92159 0.97644 0.94139 0.96426 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.42 -5.21 10.70 -148.98 -1.59 -6.80 16 3 C 0.06 0.51 5.94 71.98 0.43 0.94 16 4 C -0.12 -0.90 5.70 30.60 0.17 -0.72 16 5 C 0.12 1.24 5.67 86.38 0.49 1.73 16 6 N -0.72 -7.66 5.56 -463.06 -2.57 -10.23 16 7 C 0.52 8.29 7.83 87.66 0.69 8.98 16 8 O -0.58 -13.43 15.98 -3.05 -0.05 -13.48 16 9 C -0.12 -1.75 4.99 29.85 0.15 -1.60 16 10 C -0.11 -1.84 4.99 29.85 0.15 -1.69 16 11 C 0.52 12.36 7.83 87.66 0.69 13.04 16 12 O -0.58 -18.60 15.55 -3.03 -0.05 -18.65 16 13 N -0.69 -16.15 5.56 -442.52 -2.46 -18.61 16 14 C 0.12 3.79 5.97 44.99 0.27 4.05 16 15 H 0.11 4.07 7.40 -2.39 -0.02 4.05 16 16 C -0.18 -6.57 6.96 -9.93 -0.07 -6.64 16 17 H 0.12 3.99 8.14 -2.38 -0.02 3.97 16 18 C 0.19 9.26 5.92 85.82 0.51 9.77 16 19 N -0.62 -32.47 3.45 -678.53 -2.34 -34.81 16 20 C -0.24 -13.60 10.36 84.03 0.87 -12.73 16 21 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 22 C -0.06 -3.53 5.42 84.86 0.46 -3.07 16 23 N -0.95 -57.35 10.82 21.65 0.23 -57.12 16 24 Si 0.98 45.60 29.56 68.60 2.03 47.63 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 C 0.15 6.35 7.05 86.53 0.61 6.96 16 29 C -0.17 -5.63 7.05 -9.93 -0.07 -5.70 16 30 H 0.13 3.74 8.14 -2.39 -0.02 3.72 16 31 H 0.05 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 36 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.42 2.37 8.47 -92.70 -0.79 1.59 16 41 H 0.11 1.51 8.10 -2.39 -0.02 1.49 16 42 H 0.11 1.48 8.10 -2.38 -0.02 1.47 16 43 H 0.11 1.63 8.10 -2.38 -0.02 1.61 16 44 H 0.11 1.66 8.10 -2.39 -0.02 1.64 16 45 H 0.42 7.14 8.83 -92.71 -0.82 6.32 16 46 H 0.06 3.33 6.57 -2.39 -0.02 3.32 16 47 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 48 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 49 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -77.73 415.00 -0.87 -78.60 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -0.66 Total: 18.75 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.59 Total: 14.74 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -7.14 Total: -120.78 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -1.69 Total: -38.94 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -77.73 -0.87 -78.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115102993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.962 kcal (2) G-P(sol) polarization free energy of solvation -77.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds