Wall clock time and date at job start Sat Apr 11 2020 05:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00084 * 2 1 4 4 O 1.21283 * 120.00062 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00216 * 0.02562 * 3 2 1 6 6 N 1.46500 * 109.47348 * 179.97438 * 5 3 2 7 7 C 1.34772 * 120.00157 * 179.97438 * 6 5 3 8 8 O 1.21357 * 120.00028 * 0.02562 * 7 6 5 9 9 C 1.49445 * 120.00226 * 179.97438 * 7 6 5 10 10 O 1.21355 * 120.00210 * 0.02562 * 9 7 6 11 11 N 1.34781 * 120.00370 * 180.02562 * 9 7 6 12 12 C 1.46492 * 120.00049 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47200 * 180.02562 * 12 11 9 14 14 C 1.50693 * 109.47332 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00044 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00042 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00070 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00170 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46674 * 90.00090 * 18 16 14 20 20 H 1.48490 * 109.47322 * 210.00123 * 18 16 14 21 21 H 1.48499 * 109.46957 * 330.00448 * 18 16 14 22 22 C 1.46496 * 119.99759 * 180.02562 * 2 1 3 23 23 C 1.53004 * 109.47487 * 59.99455 * 22 2 1 24 24 C 1.53001 * 109.47239 * 179.97438 * 23 22 2 25 25 C 1.52997 * 109.46736 * 60.00467 * 24 23 22 26 26 C 1.53006 * 109.47368 * 299.99585 * 25 24 23 27 27 C 1.53001 * 109.46527 * 60.00290 * 26 25 24 28 28 H 1.09001 * 109.47060 * 270.00360 * 1 2 3 29 29 H 1.09004 * 109.47073 * 29.99849 * 1 2 3 30 30 H 1.09000 * 109.47212 * 149.99932 * 1 2 3 31 31 H 1.09000 * 109.47357 * 300.00116 * 5 3 2 32 32 H 1.08998 * 109.46869 * 60.00030 * 5 3 2 33 33 H 0.96998 * 119.99844 * 0.02562 * 6 5 3 34 34 H 0.96998 * 119.99854 * 0.02562 * 11 9 7 35 35 H 1.09000 * 109.47579 * 300.00274 * 12 11 9 36 36 H 1.08998 * 109.47204 * 60.00578 * 12 11 9 37 37 H 1.09000 * 109.46679 * 300.00337 * 13 12 11 38 38 H 1.08998 * 109.46969 * 59.99945 * 13 12 11 39 39 H 0.97000 * 120.00072 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.47380 * 180.02562 * 22 2 1 41 41 H 1.08993 * 109.47015 * 300.00345 * 23 22 2 42 42 H 1.09000 * 109.46385 * 60.00312 * 23 22 2 43 43 H 1.08995 * 109.47114 * 300.00810 * 24 23 22 44 44 H 1.08993 * 109.47156 * 180.02562 * 24 23 22 45 45 H 1.09007 * 109.47077 * 179.97438 * 25 24 23 46 46 H 1.09004 * 109.47454 * 59.99930 * 25 24 23 47 47 H 1.08993 * 109.46907 * 300.00168 * 26 25 24 48 48 H 1.09000 * 109.46878 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.46671 * 179.97438 * 27 26 25 50 50 H 1.08993 * 109.47626 * 60.00318 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 7 2.3375 3.5858 0.0011 7 6 1.8883 4.8565 0.0011 8 8 0.6952 5.0783 0.0012 9 6 2.8595 5.9924 0.0022 10 8 4.0526 5.7706 0.0026 11 7 2.4103 7.2631 0.0028 12 6 3.3623 8.3765 0.0033 13 6 2.5974 9.7016 0.0045 14 6 3.5766 10.8470 0.0044 15 1 4.6385 10.6496 0.0039 16 6 3.1171 12.1469 0.0059 17 7 3.9718 13.1465 0.0053 18 14 1.2806 12.4884 0.0074 19 1 0.7949 12.5775 1.4080 20 1 1.0151 13.7715 -0.6912 21 1 0.5718 11.3874 -0.6931 22 6 2.1975 -1.2687 -0.0006 23 6 1.8278 -2.0706 -1.2501 24 6 2.5932 -3.3954 -1.2510 25 6 2.2241 -4.1983 -0.0020 26 6 2.5938 -3.3966 1.2476 27 6 1.8284 -2.0718 1.2483 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7585 2.5303 -0.8891 32 1 0.7592 2.5298 0.8908 33 1 3.2912 3.4085 0.0006 34 1 1.4566 7.4404 0.0029 35 1 3.9890 8.3184 0.8932 36 1 3.9889 8.3192 -0.8868 37 1 1.9704 9.7600 -0.8852 38 1 1.9710 9.7587 0.8947 39 1 3.6485 14.0611 0.0060 40 1 3.2692 -1.0696 0.0000 41 1 0.7562 -2.2697 -1.2501 42 1 2.0912 -1.4986 -2.1398 43 1 3.6648 -3.1958 -1.2510 44 1 2.3302 -3.9664 -2.1413 45 1 2.7691 -5.1424 -0.0028 46 1 1.1525 -4.3979 -0.0019 47 1 3.6654 -3.1971 1.2474 48 1 2.3304 -3.9685 2.1373 49 1 2.0914 -1.5008 2.1388 50 1 0.7568 -2.2712 1.2485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117492579.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:20 Heat of formation + Delta-G solvation = -123.506569 kcal Electronic energy + Delta-G solvation = -28789.040618 eV Core-core repulsion = 24622.608280 eV Total energy + Delta-G solvation = -4166.432338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.04232 -40.30668 -38.75673 -38.18627 -35.68216 -35.47120 -34.56774 -32.79295 -31.33400 -30.87815 -30.28048 -28.45471 -27.38236 -25.68723 -23.59469 -23.18297 -22.55843 -20.88452 -20.52137 -20.23000 -19.75967 -18.52606 -17.50494 -16.98971 -16.80990 -16.57966 -16.38299 -15.70801 -15.69700 -15.17980 -14.82052 -14.78530 -14.57764 -14.47271 -14.17283 -13.86032 -13.81529 -13.47148 -13.35147 -13.22753 -12.99093 -12.83274 -12.73867 -12.66656 -12.60761 -11.72144 -11.70026 -11.63157 -11.49759 -11.23995 -11.21640 -10.88967 -10.82281 -10.43593 -10.32295 -10.30206 -9.95641 -9.55963 -9.49134 -9.31357 -9.20751 -8.76128 -8.60328 -6.11401 -4.12096 1.50631 2.04129 2.08092 2.64027 3.27015 3.33617 3.34963 3.36748 3.80256 3.84900 4.14564 4.19161 4.32995 4.38431 4.51182 4.56482 4.64509 4.65807 4.74483 4.85996 4.86913 4.89101 4.93063 5.01129 5.05715 5.14598 5.21657 5.22181 5.48005 5.50008 5.51538 5.56445 5.66615 5.76342 5.84653 5.86352 5.98174 6.00269 6.12183 6.48814 6.52217 6.74163 6.91730 7.09789 7.19563 7.52247 7.58322 7.63492 7.81744 8.21616 8.42927 8.92112 9.48488 11.01364 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036487 B = 0.001581 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.207776 B =17702.002324 C =18107.211967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.609 5.609 3 C 0.510 3.490 4 O -0.528 6.528 5 C 0.101 3.899 6 N -0.695 5.695 7 C 0.513 3.487 8 O -0.523 6.523 9 C 0.500 3.500 10 O -0.523 6.523 11 N -0.690 5.690 12 C 0.127 3.873 13 C -0.024 4.024 14 C -0.524 4.524 15 H 0.077 0.923 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.881 3.119 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.138 3.862 23 C -0.128 4.128 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.118 4.118 27 C -0.126 4.126 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.424 0.576 34 H 0.409 0.591 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.025 0.975 38 H 0.020 0.980 39 H 0.265 0.735 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.401 -37.512 -0.115 38.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.342 5.342 3 C 0.298 3.702 4 O -0.404 6.404 5 C -0.026 4.026 6 N -0.353 5.353 7 C 0.294 3.706 8 O -0.398 6.398 9 C 0.279 3.721 10 O -0.400 6.400 11 N -0.342 5.342 12 C 0.005 3.995 13 C -0.061 4.061 14 C -0.563 4.563 15 H 0.095 0.905 16 C -0.132 4.132 17 N -0.535 5.535 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.190 1.190 22 C 0.036 3.964 23 C -0.166 4.166 24 C -0.155 4.155 25 C -0.159 4.159 26 C -0.156 4.156 27 C -0.165 4.165 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.265 0.735 34 H 0.244 0.756 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.720 -37.271 -0.118 38.518 hybrid contribution -1.161 0.300 0.030 1.199 sum -10.880 -36.971 -0.088 38.539 Atomic orbital electron populations 1.21922 0.79095 1.03881 1.02542 1.47827 1.07262 1.05573 1.73544 1.20527 0.88126 0.85489 0.76100 1.90743 1.13622 1.86786 1.49262 1.21175 0.92303 0.83997 1.05169 1.45475 1.12210 1.03904 1.73676 1.20438 0.88914 0.84085 0.77170 1.90751 1.16215 1.84839 1.48035 1.19815 0.88319 0.84383 0.79576 1.90779 1.15860 1.84573 1.48762 1.46184 1.12348 1.05051 1.70591 1.21728 0.91361 0.84125 1.02263 1.19825 0.97027 0.92045 0.97232 1.20882 0.94403 0.89023 1.51948 0.90519 1.24984 0.97826 0.96084 0.94266 1.69903 1.34293 0.99096 1.50257 0.86765 0.85903 0.77933 0.78595 1.20173 1.21238 1.18959 1.21183 0.98391 0.81890 0.94959 1.21887 1.00774 0.96311 0.97623 1.21498 1.00569 0.95340 0.98138 1.21573 1.01437 0.98434 0.94451 1.21505 1.00561 0.95379 0.98125 1.21871 1.00786 0.96231 0.97596 0.91918 0.90456 0.90368 0.87818 0.87810 0.73548 0.75580 0.91204 0.91177 0.95707 0.96140 0.92514 0.87844 0.91487 0.91450 0.91569 0.91519 0.91757 0.91921 0.91578 0.91527 0.91496 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.23 9.30 59.85 0.56 0.79 16 2 N -0.61 -3.97 2.76 -173.92 -0.48 -4.45 16 3 C 0.51 4.79 7.74 -10.99 -0.09 4.70 16 4 O -0.53 -6.90 14.99 5.55 0.08 -6.82 16 5 C 0.10 0.89 4.71 -5.19 -0.02 0.86 16 6 N -0.69 -8.51 5.52 -61.91 -0.34 -8.86 16 7 C 0.51 7.43 7.89 -11.59 -0.09 7.34 16 8 O -0.52 -8.04 16.48 5.49 0.09 -7.94 16 9 C 0.50 8.49 7.89 -11.59 -0.09 8.40 16 10 O -0.52 -10.13 16.48 5.49 0.09 -10.04 16 11 N -0.69 -11.95 5.55 -60.73 -0.34 -12.29 16 12 C 0.13 2.56 5.61 -4.04 -0.02 2.54 16 13 C -0.02 -0.54 4.16 -27.88 -0.12 -0.65 16 14 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 15 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 18 Si 0.88 21.13 27.47 -169.99 -4.67 16.47 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 22 C 0.14 0.88 2.52 -67.93 -0.17 0.71 16 23 C -0.13 -0.63 5.18 -26.73 -0.14 -0.77 16 24 C -0.12 -0.51 5.92 -26.73 -0.16 -0.67 16 25 C -0.12 -0.47 5.92 -26.73 -0.16 -0.62 16 26 C -0.12 -0.52 5.92 -26.73 -0.16 -0.68 16 27 C -0.13 -0.64 5.21 -26.73 -0.14 -0.78 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.08 0.21 6.44 -51.93 -0.33 -0.13 16 30 H 0.08 0.17 6.43 -51.93 -0.33 -0.16 16 31 H 0.10 0.76 7.40 -51.93 -0.38 0.38 16 32 H 0.10 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.42 5.63 6.91 -40.82 -0.28 5.34 16 34 H 0.41 6.46 7.94 -40.82 -0.32 6.13 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 38 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.10 0.91 6.90 -51.93 -0.36 0.55 16 41 H 0.07 0.26 6.66 -51.93 -0.35 -0.08 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.27 7.67 -51.93 -0.40 -0.13 16 LS Contribution 402.17 15.07 6.06 6.06 Total: -1.00 -33.88 402.17 -8.14 -42.02 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.19 Total: 4.19 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -1.23 Total: 8.14 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.39 Total: -52.07 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: 0.26 Total: -24.80 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.88 -8.14 -42.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117492579.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.485 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds