Wall clock time and date at job start Sat Apr 11 2020 05:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00084 * 2 1 4 4 O 1.21283 * 120.00062 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00216 * 0.02562 * 3 2 1 6 6 N 1.46500 * 109.47348 * 179.97438 * 5 3 2 7 7 C 1.34772 * 120.00157 * 179.97438 * 6 5 3 8 8 O 1.21357 * 120.00028 * 0.02562 * 7 6 5 9 9 C 1.49445 * 120.00226 * 179.97438 * 7 6 5 10 10 O 1.21355 * 120.00210 * 0.02562 * 9 7 6 11 11 N 1.34781 * 120.00370 * 180.02562 * 9 7 6 12 12 C 1.46492 * 120.00049 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47200 * 180.02562 * 12 11 9 14 14 C 1.50693 * 109.47332 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00044 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00042 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00070 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00170 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46674 * 90.00090 * 18 16 14 20 20 H 1.48490 * 109.47322 * 210.00123 * 18 16 14 21 21 H 1.48499 * 109.46957 * 330.00448 * 18 16 14 22 22 C 1.46496 * 119.99759 * 180.02562 * 2 1 3 23 23 C 1.53004 * 109.47487 * 59.99455 * 22 2 1 24 24 C 1.53001 * 109.47239 * 179.97438 * 23 22 2 25 25 C 1.52997 * 109.46736 * 60.00467 * 24 23 22 26 26 C 1.53006 * 109.47368 * 299.99585 * 25 24 23 27 27 C 1.53001 * 109.46527 * 60.00290 * 26 25 24 28 28 H 1.09001 * 109.47060 * 270.00360 * 1 2 3 29 29 H 1.09004 * 109.47073 * 29.99849 * 1 2 3 30 30 H 1.09000 * 109.47212 * 149.99932 * 1 2 3 31 31 H 1.09000 * 109.47357 * 300.00116 * 5 3 2 32 32 H 1.08998 * 109.46869 * 60.00030 * 5 3 2 33 33 H 0.96998 * 119.99844 * 0.02562 * 6 5 3 34 34 H 0.96998 * 119.99854 * 0.02562 * 11 9 7 35 35 H 1.09000 * 109.47579 * 300.00274 * 12 11 9 36 36 H 1.08998 * 109.47204 * 60.00578 * 12 11 9 37 37 H 1.09000 * 109.46679 * 300.00337 * 13 12 11 38 38 H 1.08998 * 109.46969 * 59.99945 * 13 12 11 39 39 H 0.97000 * 120.00072 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.47380 * 180.02562 * 22 2 1 41 41 H 1.08993 * 109.47015 * 300.00345 * 23 22 2 42 42 H 1.09000 * 109.46385 * 60.00312 * 23 22 2 43 43 H 1.08995 * 109.47114 * 300.00810 * 24 23 22 44 44 H 1.08993 * 109.47156 * 180.02562 * 24 23 22 45 45 H 1.09007 * 109.47077 * 179.97438 * 25 24 23 46 46 H 1.09004 * 109.47454 * 59.99930 * 25 24 23 47 47 H 1.08993 * 109.46907 * 300.00168 * 26 25 24 48 48 H 1.09000 * 109.46878 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.46671 * 179.97438 * 27 26 25 50 50 H 1.08993 * 109.47626 * 60.00318 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 7 2.3375 3.5858 0.0011 7 6 1.8883 4.8565 0.0011 8 8 0.6952 5.0783 0.0012 9 6 2.8595 5.9924 0.0022 10 8 4.0526 5.7706 0.0026 11 7 2.4103 7.2631 0.0028 12 6 3.3623 8.3765 0.0033 13 6 2.5974 9.7016 0.0045 14 6 3.5766 10.8470 0.0044 15 1 4.6385 10.6496 0.0039 16 6 3.1171 12.1469 0.0059 17 7 3.9718 13.1465 0.0053 18 14 1.2806 12.4884 0.0074 19 1 0.7949 12.5775 1.4080 20 1 1.0151 13.7715 -0.6912 21 1 0.5718 11.3874 -0.6931 22 6 2.1975 -1.2687 -0.0006 23 6 1.8278 -2.0706 -1.2501 24 6 2.5932 -3.3954 -1.2510 25 6 2.2241 -4.1983 -0.0020 26 6 2.5938 -3.3966 1.2476 27 6 1.8284 -2.0718 1.2483 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7585 2.5303 -0.8891 32 1 0.7592 2.5298 0.8908 33 1 3.2912 3.4085 0.0006 34 1 1.4566 7.4404 0.0029 35 1 3.9890 8.3184 0.8932 36 1 3.9889 8.3192 -0.8868 37 1 1.9704 9.7600 -0.8852 38 1 1.9710 9.7587 0.8947 39 1 3.6485 14.0611 0.0060 40 1 3.2692 -1.0696 0.0000 41 1 0.7562 -2.2697 -1.2501 42 1 2.0912 -1.4986 -2.1398 43 1 3.6648 -3.1958 -1.2510 44 1 2.3302 -3.9664 -2.1413 45 1 2.7691 -5.1424 -0.0028 46 1 1.1525 -4.3979 -0.0019 47 1 3.6654 -3.1971 1.2474 48 1 2.3304 -3.9685 2.1373 49 1 2.0914 -1.5008 2.1388 50 1 0.7568 -2.2712 1.2485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117492579.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:19 Heat of formation + Delta-G solvation = -148.581083 kcal Electronic energy + Delta-G solvation = -28790.127930 eV Core-core repulsion = 24622.608280 eV Total energy + Delta-G solvation = -4167.519650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.94873 -41.27845 -39.72613 -39.06644 -36.98268 -36.19527 -35.74345 -34.76424 -32.13539 -31.71517 -31.40805 -29.25201 -27.82946 -27.31340 -24.86157 -23.56796 -23.27338 -22.63967 -21.57745 -20.90855 -20.36309 -19.63609 -19.02308 -18.30115 -17.61540 -17.46158 -17.43459 -16.79848 -16.56149 -16.28577 -16.18100 -15.83492 -15.62993 -15.13992 -15.07963 -14.88431 -14.82151 -14.58767 -14.29443 -14.26359 -13.77212 -13.65178 -13.38858 -13.30099 -13.15574 -13.10520 -13.06579 -12.91042 -12.23034 -12.19411 -12.13520 -12.07878 -11.77191 -11.60335 -11.51122 -11.31556 -11.21253 -11.01241 -10.79709 -10.78483 -10.52871 -10.26152 -9.73052 -8.29602 -6.36805 0.25535 1.10859 1.34546 1.40518 1.42307 1.53659 1.86452 2.05985 2.37285 2.60479 3.05651 3.24852 3.38453 3.70865 3.79176 3.96443 4.11957 4.16865 4.19110 4.26312 4.26957 4.30189 4.38591 4.47070 4.50944 4.55483 4.66768 4.69698 4.72360 4.81697 4.88160 4.96999 4.98274 5.10141 5.10251 5.17204 5.19741 5.29201 5.32175 5.37566 5.38098 5.46949 5.52877 5.58907 5.81306 6.16139 6.20385 6.28449 6.61347 6.71199 6.88705 6.91251 7.27872 8.86766 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036487 B = 0.001581 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.207776 B =17702.002324 C =18107.211967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.600 5.600 3 C 0.506 3.494 4 O -0.576 6.576 5 C 0.100 3.900 6 N -0.688 5.688 7 C 0.524 3.476 8 O -0.528 6.528 9 C 0.499 3.501 10 O -0.551 6.551 11 N -0.684 5.684 12 C 0.140 3.860 13 C -0.016 4.016 14 C -0.538 4.538 15 H 0.034 0.966 16 C 0.007 3.993 17 N -0.948 5.948 18 Si 0.955 3.045 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.239 1.239 22 C 0.136 3.864 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.120 4.120 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.419 0.581 34 H 0.419 0.581 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.268 0.732 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.052 0.948 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.411 -39.688 -0.147 42.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.331 5.331 3 C 0.294 3.706 4 O -0.456 6.456 5 C -0.026 4.026 6 N -0.344 5.344 7 C 0.304 3.696 8 O -0.405 6.405 9 C 0.280 3.720 10 O -0.430 6.430 11 N -0.336 5.336 12 C 0.018 3.982 13 C -0.054 4.054 14 C -0.576 4.576 15 H 0.052 0.948 16 C -0.190 4.190 17 N -0.588 5.588 18 Si 0.777 3.223 19 H -0.190 1.190 20 H -0.212 1.212 21 H -0.162 1.162 22 C 0.033 3.967 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.155 4.155 26 C -0.156 4.156 27 C -0.158 4.158 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.258 0.742 34 H 0.257 0.743 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.072 0.928 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.787 -39.524 -0.150 41.860 hybrid contribution 0.190 0.877 0.044 0.899 sum -13.597 -38.646 -0.106 40.969 Atomic orbital electron populations 1.22235 0.76672 1.05437 1.03934 1.47924 1.08719 1.04726 1.71779 1.20683 0.87592 0.86436 0.75851 1.90730 1.15604 1.87399 1.51864 1.21453 0.91605 0.82331 1.07166 1.45507 1.12660 1.04031 1.72203 1.19740 0.88028 0.83971 0.77838 1.90754 1.15884 1.84854 1.48996 1.20294 0.88468 0.84848 0.78407 1.90771 1.17357 1.85036 1.49790 1.45930 1.12346 1.04600 1.70739 1.21299 0.91351 0.84302 1.01287 1.19690 0.96205 0.91200 0.98305 1.21210 0.93662 0.91170 1.51601 0.94784 1.26013 1.03637 0.95658 0.93691 1.70067 1.37113 0.99753 1.51898 0.85599 0.78957 0.78400 0.79327 1.19050 1.21181 1.16215 1.21197 0.96789 0.82180 0.96536 1.21836 1.01928 0.96032 0.96112 1.21507 0.99735 0.95317 0.99029 1.21551 1.02199 0.98245 0.93478 1.21513 0.99725 0.95340 0.99034 1.21815 1.01879 0.95979 0.96112 0.90549 0.89254 0.88597 0.85608 0.85721 0.74153 0.74311 0.92334 0.92329 0.94416 0.94551 0.92320 0.91101 0.89533 0.92731 0.92939 0.90558 0.91313 0.90714 0.92937 0.90612 0.92846 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.20 9.30 127.77 1.19 1.39 16 2 N -0.60 -6.92 2.76 -822.57 -2.27 -9.19 16 3 C 0.51 9.11 7.74 87.66 0.68 9.79 16 4 O -0.58 -15.56 14.99 -3.04 -0.05 -15.61 16 5 C 0.10 1.55 4.71 85.63 0.40 1.95 16 6 N -0.69 -16.04 5.52 -468.15 -2.58 -18.63 16 7 C 0.52 14.31 7.89 87.27 0.69 15.00 16 8 O -0.53 -14.80 16.48 -3.27 -0.05 -14.86 16 9 C 0.50 16.57 7.89 87.27 0.69 17.26 16 10 O -0.55 -21.50 16.48 -3.26 -0.05 -21.55 16 11 N -0.68 -22.80 5.55 -464.42 -2.58 -25.38 16 12 C 0.14 5.66 5.61 86.38 0.48 6.15 16 13 C -0.02 -0.72 4.16 29.85 0.12 -0.60 16 14 C -0.54 -30.51 9.66 25.60 0.25 -30.26 16 15 H 0.03 2.15 7.99 -2.91 -0.02 2.12 16 16 C 0.01 0.43 5.47 84.65 0.46 0.89 16 17 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 18 Si 0.95 42.62 27.47 68.60 1.88 44.50 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 22 C 0.14 1.64 2.52 44.99 0.11 1.76 16 23 C -0.12 -1.03 5.18 30.60 0.16 -0.87 16 24 C -0.12 -0.91 5.92 30.59 0.18 -0.73 16 25 C -0.12 -0.69 5.92 30.60 0.18 -0.51 16 26 C -0.12 -0.93 5.92 30.60 0.18 -0.74 16 27 C -0.12 -1.05 5.21 30.60 0.16 -0.89 16 28 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 0.14 6.44 -2.38 -0.02 0.12 16 30 H 0.10 0.04 6.43 -2.39 -0.02 0.02 16 31 H 0.13 1.44 7.40 -2.39 -0.02 1.42 16 32 H 0.13 1.46 8.11 -2.39 -0.02 1.44 16 33 H 0.42 11.10 6.91 -92.71 -0.64 10.46 16 34 H 0.42 12.25 7.94 -92.71 -0.74 11.51 16 35 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 37 H 0.04 1.60 7.20 -2.39 -0.02 1.58 16 38 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.07 1.34 6.90 -2.39 -0.02 1.33 16 41 H 0.09 0.41 6.66 -2.39 -0.02 0.39 16 42 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 43 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 46 H 0.07 0.29 8.14 -2.38 -0.02 0.28 16 47 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.08 0.44 7.67 -2.39 -0.02 0.42 16 Total: -1.00 -75.63 402.17 0.06 -75.57 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -0.47 Total: 24.24 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 5.94 Total: 19.58 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -7.13 Total: -111.86 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -0.15 Total: -52.02 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.50 kcal Total: -75.63 0.06 -75.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117492579.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.015 kcal (2) G-P(sol) polarization free energy of solvation -75.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds