Wall clock time and date at job start Sat Apr 11 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 110.99940 * 2 1 4 4 C 1.46895 * 110.99633 * 123.95801 * 2 1 3 5 5 C 1.52999 * 109.47488 * 74.87242 * 4 2 1 6 6 H 1.09004 * 110.88431 * 308.28067 * 5 4 2 7 7 C 1.55156 * 111.00528 * 184.40501 * 5 4 2 8 8 C 1.54322 * 102.94168 * 206.38395 * 7 5 4 9 9 N 1.47023 * 107.27308 * 22.19114 * 8 7 5 10 10 C 1.34776 * 125.65511 * 181.02708 * 9 8 7 11 11 O 1.21343 * 120.00659 * 180.02562 * 10 9 8 12 12 C 1.49453 * 119.99336 * 0.02562 * 10 9 8 13 13 O 1.21354 * 120.00459 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99920 * 180.02562 * 12 10 9 15 15 C 1.47429 * 125.64505 * 0.03031 * 14 12 10 16 16 C 1.54907 * 104.83114 * 155.83249 * 15 14 12 17 17 C 1.55160 * 101.58378 * 37.00876 * 16 15 14 18 18 O 1.42903 * 110.72316 * 83.03430 * 17 16 15 19 19 C 1.50697 * 110.72464 * 206.13783 * 17 16 15 20 20 H 1.07998 * 119.99846 * 354.71466 * 19 17 16 21 21 C 1.37881 * 120.00367 * 174.72384 * 19 17 16 22 22 N 1.31510 * 119.99491 * 0.95100 * 21 19 17 23 23 Si 1.86798 * 120.00019 * 180.94912 * 21 19 17 24 24 H 1.48500 * 109.46758 * 84.98741 * 23 21 19 25 25 H 1.48504 * 109.47034 * 324.98842 * 23 21 19 26 26 H 1.48495 * 109.46920 * 204.98742 * 23 21 19 27 27 C 1.47016 * 125.65083 * 179.97438 * 14 12 10 28 28 C 1.47428 * 108.70121 * 1.28667 * 9 8 7 29 29 H 1.08994 * 109.47004 * 296.04707 * 1 2 3 30 30 H 1.09005 * 109.46568 * 56.04877 * 1 2 3 31 31 H 1.09002 * 109.47373 * 176.03983 * 1 2 3 32 32 H 1.09002 * 109.46685 * 188.49612 * 3 2 1 33 33 H 1.08992 * 109.47043 * 308.50417 * 3 2 1 34 34 H 1.09000 * 109.46546 * 68.50543 * 3 2 1 35 35 H 1.09005 * 109.47201 * 314.86727 * 4 2 1 36 36 H 1.08998 * 109.47054 * 194.87381 * 4 2 1 37 37 H 1.09000 * 110.72541 * 88.01943 * 7 5 4 38 38 H 1.09008 * 110.72153 * 324.74274 * 7 5 4 39 39 H 1.08997 * 109.88392 * 262.77410 * 8 7 5 40 40 H 1.09005 * 109.88372 * 141.60232 * 8 7 5 41 41 H 1.08992 * 110.36932 * 36.99644 * 15 14 12 42 42 H 1.09001 * 110.36474 * 274.66874 * 15 14 12 43 43 H 1.08997 * 111.01039 * 278.93690 * 16 15 14 44 44 H 1.09003 * 111.03978 * 155.09433 * 16 15 14 45 45 H 0.96695 * 114.00110 * 182.44571 * 18 17 16 46 46 H 0.97003 * 119.99891 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.88418 * 61.67917 * 27 14 12 48 48 H 1.08999 * 109.88324 * 300.51456 * 27 14 12 49 49 H 1.08998 * 110.36522 * 94.48673 * 28 9 8 50 50 H 1.08998 * 110.36954 * 216.80950 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.8267 -2.2624 0.8666 6 1 0.7990 -2.4930 0.5859 7 6 2.2703 -3.1031 2.0929 8 6 2.6842 -4.4477 1.4586 9 7 2.9959 -4.1863 0.0458 10 6 3.3791 -5.1098 -0.8580 11 8 3.6119 -4.7791 -2.0021 12 6 3.5172 -6.5412 -0.4511 13 8 3.2839 -6.8721 0.6929 14 7 3.9009 -7.4647 -1.3547 15 6 4.2151 -7.2022 -2.7710 16 6 5.1561 -8.3595 -3.1894 17 6 4.5481 -9.5536 -2.4072 18 8 3.4449 -10.1161 -3.1204 19 6 5.5958 -10.6024 -2.1362 20 1 6.5868 -10.4958 -2.5522 21 6 5.2893 -11.6981 -1.3575 22 7 4.0772 -11.8374 -0.8666 23 14 6.5955 -12.9846 -0.9997 24 1 7.4038 -12.5571 0.1705 25 1 7.4795 -13.1350 -2.1835 26 1 5.9418 -14.2841 -0.7017 27 6 4.0765 -8.9003 -1.0910 28 6 2.8259 -2.7457 -0.2171 29 1 -0.3633 0.4512 0.9232 30 1 -0.3632 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0710 32 1 3.0746 1.3463 -0.1518 33 1 1.5284 1.9399 -0.8042 34 1 1.7741 1.8455 0.9562 35 1 1.4487 -0.4965 2.0412 36 1 3.0528 -0.5379 1.2710 37 1 1.4403 -3.2427 2.7855 38 1 3.1181 -2.6361 2.5943 39 1 1.8627 -5.1603 1.5313 40 1 3.5651 -4.8413 1.9658 41 1 4.7232 -6.2436 -2.8755 42 1 3.3050 -7.2176 -3.3706 43 1 6.1802 -8.1649 -2.8712 44 1 5.1094 -8.5324 -4.2646 45 1 3.0058 -10.8422 -2.6566 46 1 3.8615 -12.6081 -0.3184 47 1 3.1286 -9.3385 -0.7786 48 1 4.8280 -9.0455 -0.3150 49 1 3.7791 -2.2267 -0.1162 50 1 2.4108 -2.5881 -1.2126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118249202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:32 Heat of formation + Delta-G solvation = -96.756993 kcal Electronic energy + Delta-G solvation = -30541.035084 eV Core-core repulsion = 26375.762695 eV Total energy + Delta-G solvation = -4165.272389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.53857 -39.14127 -38.02710 -37.17604 -36.78183 -34.28671 -32.27395 -32.22848 -30.10988 -29.55898 -27.97695 -27.92376 -27.15416 -25.65589 -24.27689 -22.87884 -22.01402 -21.42023 -20.35293 -19.59436 -18.83898 -17.17223 -17.05748 -16.73732 -16.25971 -15.87009 -15.59025 -15.34104 -15.19203 -14.90677 -14.73344 -14.33761 -14.08893 -13.64085 -13.18358 -13.13748 -12.96388 -12.89664 -12.81677 -12.76464 -12.63171 -12.30904 -12.24365 -12.06879 -11.79716 -11.71442 -11.51339 -11.30525 -11.16448 -11.06559 -10.88074 -10.83893 -10.67669 -10.53257 -10.49910 -10.14711 -9.29706 -9.01309 -8.74636 -8.70901 -8.65945 -8.32838 -7.95148 -6.29500 -4.38030 1.85356 2.58265 3.21426 3.28436 3.31409 3.48837 3.63697 3.80969 4.26110 4.29627 4.41007 4.49773 4.72095 4.76312 4.93073 4.98921 5.00978 5.03566 5.11442 5.17541 5.28022 5.35838 5.38624 5.50188 5.54014 5.55700 5.57254 5.74128 5.84540 5.84803 5.88724 5.93329 6.00794 6.08208 6.22041 6.36182 6.55171 6.60990 6.61840 6.78846 6.85353 6.87958 7.22377 7.29951 7.36888 7.72021 7.85095 8.03201 8.08052 8.50371 8.66160 9.29208 9.38435 10.78218 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026419 B = 0.002297 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.596233 B =12185.694464 C =12670.547601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.097 4.097 6 H 0.087 0.913 7 C -0.131 4.131 8 C 0.110 3.890 9 N -0.599 5.599 10 C 0.524 3.476 11 O -0.518 6.518 12 C 0.508 3.492 13 O -0.535 6.535 14 N -0.576 5.576 15 C 0.099 3.901 16 C -0.121 4.121 17 C 0.247 3.753 18 O -0.583 6.583 19 C -0.536 4.536 20 H 0.068 0.932 21 C 0.069 3.931 22 N -0.895 5.895 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.272 1.272 26 H -0.285 1.285 27 C 0.103 3.897 28 C 0.122 3.878 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.043 0.957 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.382 0.618 46 H 0.270 0.730 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 22.342 5.407 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.271 5.271 3 C -0.123 4.123 4 C -0.062 4.062 5 C -0.116 4.116 6 H 0.106 0.894 7 C -0.169 4.169 8 C -0.013 4.013 9 N -0.335 5.335 10 C 0.308 3.692 11 O -0.394 6.394 12 C 0.290 3.710 13 O -0.413 6.413 14 N -0.309 5.309 15 C -0.023 4.023 16 C -0.159 4.159 17 C 0.207 3.793 18 O -0.392 6.392 19 C -0.575 4.575 20 H 0.086 0.914 21 C -0.134 4.134 22 N -0.534 5.534 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.197 1.197 26 H -0.210 1.210 27 C -0.018 4.018 28 C 0.000 4.000 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.233 0.767 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.087 0.913 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.351 22.413 4.610 23.499 hybrid contribution 0.133 -0.771 1.554 1.740 sum -5.218 21.641 6.164 23.099 Atomic orbital electron populations 1.22452 0.87225 1.02542 1.00411 1.61933 1.08140 1.13854 1.43204 1.22391 1.01050 0.88653 1.00253 1.22094 1.00525 0.92267 0.91346 1.22413 1.00096 0.93864 0.95264 0.89424 1.22786 1.01898 0.95038 0.97195 1.22123 1.02184 0.96735 0.80216 1.48281 1.66133 1.08033 1.11021 1.20120 0.77948 0.86520 0.84613 1.90700 1.48772 1.81477 1.18458 1.19493 0.80430 0.85637 0.85395 1.90702 1.50920 1.81137 1.18585 1.48682 1.61776 1.09654 1.10759 1.22627 0.99501 0.99671 0.80513 1.22821 0.98063 0.94029 1.00945 1.19518 0.84891 0.89684 0.85246 1.86125 1.48472 1.54553 1.50044 1.21506 0.98057 1.05859 1.32046 0.91419 1.25091 0.95873 0.97987 0.94421 1.69688 1.19037 1.30295 1.34360 0.86400 0.81311 0.80314 0.78804 1.20363 1.19695 1.21024 1.23184 1.01729 0.75163 1.01751 1.22261 0.98598 0.79099 0.99998 0.95669 0.91334 0.91094 0.91196 0.91330 0.95722 0.93891 0.90384 0.89854 0.90442 0.90279 0.90350 0.89547 0.91423 0.90490 0.90338 0.76749 0.91964 0.91122 0.90993 0.91286 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.40 60.07 0.56 0.71 16 2 N -0.55 -4.13 4.89 -251.26 -1.23 -5.36 16 3 C 0.02 0.15 9.53 60.06 0.57 0.72 16 4 C 0.07 0.46 4.45 -3.83 -0.02 0.44 16 5 C -0.10 -0.81 3.10 -88.35 -0.27 -1.09 16 6 H 0.09 0.77 6.75 -51.93 -0.35 0.42 16 7 C -0.13 -1.06 6.42 -24.90 -0.16 -1.22 16 8 C 0.11 1.36 5.49 -3.06 -0.02 1.34 16 9 N -0.60 -8.68 3.32 -170.89 -0.57 -9.25 16 10 C 0.52 9.48 7.88 -11.58 -0.09 9.39 16 11 O -0.52 -10.02 14.03 5.50 0.08 -9.94 16 12 C 0.51 10.50 7.88 -11.58 -0.09 10.41 16 13 O -0.53 -11.65 14.45 5.49 0.08 -11.57 16 14 N -0.58 -12.56 3.33 -171.02 -0.57 -13.13 16 15 C 0.10 1.99 6.06 -2.53 -0.02 1.97 16 16 C -0.12 -2.53 6.22 -24.58 -0.15 -2.68 16 17 C 0.25 6.05 0.85 -89.93 -0.08 5.98 16 18 O -0.58 -14.81 13.09 -35.23 -0.46 -15.27 16 19 C -0.54 -14.02 8.12 -34.44 -0.28 -14.30 16 20 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 21 C 0.07 1.80 5.26 -17.82 -0.09 1.71 16 22 N -0.89 -23.65 10.97 55.43 0.61 -23.04 16 23 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.10 2.50 5.25 -3.06 -0.02 2.48 16 28 C 0.12 1.40 6.32 -2.41 -0.02 1.38 16 29 H 0.02 0.15 8.09 -51.93 -0.42 -0.27 16 30 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 31 H 0.07 0.48 6.76 -51.93 -0.35 0.13 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.38 8.04 -51.93 -0.42 -0.04 16 34 H 0.02 0.13 8.13 -51.93 -0.42 -0.29 16 35 H 0.04 0.27 7.98 -51.93 -0.41 -0.15 16 36 H 0.08 0.51 7.79 -51.93 -0.40 0.11 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.54 8.04 -51.92 -0.42 0.13 16 39 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 40 H 0.08 1.04 7.70 -51.93 -0.40 0.64 16 41 H 0.09 1.65 6.16 -51.93 -0.32 1.33 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.08 1.55 8.04 -51.93 -0.42 1.13 16 44 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 45 H 0.38 9.84 7.42 45.56 0.34 10.18 16 46 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 47 H 0.07 1.85 7.95 -51.93 -0.41 1.43 16 48 H 0.07 1.87 7.81 -51.93 -0.41 1.47 16 49 H 0.07 0.75 7.92 -51.93 -0.41 0.34 16 50 H 0.08 1.09 8.03 -51.93 -0.42 0.67 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -29.58 394.08 -9.00 -38.58 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -7.69 Total: 10.43 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: -0.16 Total: 17.24 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -1.76 Total: -50.77 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.30 Total: -36.79 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.58 -9.00 -38.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118249202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.174 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds