Wall clock time and date at job start Sat Apr 11 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99933 * 2 1 4 4 H 1.09000 * 109.46968 * 340.48227 * 3 2 1 5 5 C 1.50695 * 109.46824 * 220.47850 * 3 2 1 6 6 O 1.21283 * 120.00579 * 349.85413 * 5 3 2 7 7 N 1.34780 * 119.99785 * 169.85941 * 5 3 2 8 8 C 1.46496 * 119.99850 * 4.12533 * 7 5 3 9 9 C 1.46502 * 120.00244 * 184.13247 * 7 5 3 10 10 H 1.09001 * 110.90125 * 357.58282 * 9 7 5 11 11 C 1.55138 * 110.99330 * 121.44726 * 9 7 5 12 12 C 1.54323 * 103.01769 * 153.74335 * 11 9 7 13 13 N 1.47444 * 107.23517 * 337.72289 * 12 11 9 14 14 C 1.46896 * 110.99595 * 236.74080 * 13 12 11 15 15 C 1.50695 * 109.47344 * 290.11955 * 14 13 12 16 16 O 1.21297 * 119.99738 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00276 * 180.02562 * 15 14 13 18 18 C 1.37104 * 120.00180 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99514 * 0.02562 * 18 17 15 20 20 C 1.38944 * 119.99954 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00432 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99781 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46921 * 90.00036 * 22 20 18 24 24 H 1.48496 * 109.47527 * 210.00057 * 22 20 18 25 25 H 1.48495 * 109.47365 * 330.00483 * 22 20 18 26 26 C 1.47848 * 108.56298 * 359.00520 * 13 12 11 27 27 C 1.52995 * 109.46899 * 100.47800 * 3 2 1 28 28 C 1.52997 * 117.50468 * 2.75033 * 27 3 2 29 29 C 1.52998 * 60.00178 * 252.50777 * 28 27 3 30 30 H 1.09003 * 109.46997 * 184.39188 * 1 2 3 31 31 H 1.08997 * 109.47178 * 304.39407 * 1 2 3 32 32 H 1.09004 * 109.46764 * 64.39743 * 1 2 3 33 33 H 1.09002 * 109.47707 * 269.99682 * 8 7 5 34 34 H 1.09004 * 109.47409 * 30.00369 * 8 7 5 35 35 H 1.09007 * 109.47018 * 149.99700 * 8 7 5 36 36 H 1.09004 * 110.70550 * 35.36896 * 11 9 7 37 37 H 1.08991 * 110.70873 * 272.12883 * 11 9 7 38 38 H 1.08998 * 109.88218 * 97.12400 * 12 11 9 39 39 H 1.08996 * 109.89161 * 218.15132 * 12 11 9 40 40 H 1.08999 * 109.47792 * 50.12702 * 14 13 12 41 41 H 1.09003 * 109.46869 * 170.12443 * 14 13 12 42 42 H 0.96996 * 119.99986 * 359.97438 * 17 15 14 43 43 H 0.96995 * 120.00387 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.36812 * 142.93406 * 26 13 12 45 45 H 1.09006 * 110.37215 * 265.26619 * 26 13 12 46 46 H 1.09005 * 115.54820 * 148.45026 * 27 3 2 47 47 H 1.09007 * 117.49380 * 359.97438 * 28 27 3 48 48 H 1.09001 * 117.50563 * 145.01694 * 28 27 3 49 49 H 1.08998 * 117.49776 * 252.50799 * 29 28 27 50 50 H 1.09003 * 117.51901 * 107.47405 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2731 2.0313 -0.3433 5 6 3.2018 1.3247 -0.9223 6 8 3.6341 0.2866 -1.3765 7 7 3.7873 2.4958 -1.2425 8 6 3.3231 3.7399 -0.6239 9 6 4.8877 2.5244 -2.2092 10 1 5.1389 1.5175 -2.5424 11 6 4.5451 3.4393 -3.4144 12 6 5.9338 3.8870 -3.9168 13 7 6.8752 3.7348 -2.7923 14 6 7.5456 5.0068 -2.4913 15 6 8.5002 5.3477 -3.6064 16 8 8.6107 4.6044 -4.5586 17 7 9.2310 6.4785 -3.5458 18 6 10.0991 6.7889 -4.5606 19 1 10.1968 6.1275 -5.4088 20 6 10.8529 7.9544 -4.4979 21 7 10.7343 8.7590 -3.4656 22 14 12.0361 8.3770 -5.8802 23 1 11.3296 9.1843 -6.9070 24 1 13.1759 9.1573 -5.3351 25 1 12.5434 7.1253 -6.4976 26 6 6.1281 3.2385 -1.6169 27 6 2.4573 1.6646 1.4184 28 6 2.2775 0.6035 2.5059 29 6 1.3691 1.8344 2.4805 30 1 -0.3633 -1.0247 0.0787 31 1 -0.3633 0.5805 0.8480 32 1 -0.3633 0.4441 -0.9268 33 1 2.5333 4.1770 -1.2349 34 1 2.9362 3.5279 0.3729 35 1 4.1546 4.4409 -0.5493 36 1 3.9569 4.2983 -3.0912 37 1 4.0182 2.8786 -4.1863 38 1 6.2470 3.2581 -4.7502 39 1 5.8955 4.9294 -4.2330 40 1 6.8006 5.7968 -2.3964 41 1 8.0978 4.9140 -1.5561 42 1 9.1423 7.0730 -2.7846 43 1 11.2602 9.5728 -3.4220 44 1 6.7370 2.5342 -1.0501 45 1 5.8206 4.0708 -0.9836 46 1 3.3319 2.3117 1.4860 47 1 1.8403 -0.3504 2.2108 48 1 3.0339 0.5522 3.2891 49 1 1.5279 2.5929 3.2470 50 1 0.3346 1.6905 2.1685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318400032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:08 Heat of formation + Delta-G solvation = -58.856076 kcal Electronic energy + Delta-G solvation = -30063.086563 eV Core-core repulsion = 25899.457681 eV Total energy + Delta-G solvation = -4163.628882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85901 -39.40481 -38.37151 -37.43439 -36.35467 -35.27730 -33.85659 -31.64984 -31.09269 -29.64959 -28.43015 -27.37982 -26.74064 -26.02902 -24.18981 -22.78606 -22.06426 -21.05960 -21.01029 -19.62994 -19.00082 -17.87914 -17.72400 -17.26543 -16.72719 -16.32799 -15.97064 -15.61119 -15.46324 -15.06943 -14.68476 -14.50421 -14.23002 -13.92403 -13.76926 -13.70021 -13.53618 -13.37149 -13.09690 -13.03358 -12.64553 -12.27420 -12.23400 -11.88399 -11.81926 -11.78994 -11.64659 -11.48703 -11.41820 -11.15424 -11.03268 -10.94768 -10.64829 -10.59019 -10.38229 -10.33969 -10.20438 -9.63304 -9.48365 -8.89037 -8.43797 -7.95300 -7.89199 -6.40288 -3.80849 2.29485 2.39264 3.18710 3.20498 3.27274 3.33648 3.55385 3.92495 4.00266 4.08225 4.20262 4.28462 4.36946 4.51554 4.58174 4.63008 4.67977 4.75625 4.80273 4.88773 5.00083 5.03441 5.07648 5.15280 5.17548 5.24194 5.26141 5.29368 5.35123 5.42983 5.48686 5.62646 5.64381 5.75894 5.77997 5.80007 5.90583 5.98737 6.06884 6.23903 6.30459 6.44501 6.58675 7.09056 7.22610 7.23360 7.56721 7.92704 8.08054 8.63841 9.20129 9.56339 10.08607 10.77609 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029709 B = 0.001946 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.249461 B =14387.286641 C =14874.065974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.353 6.353 3 C 0.106 3.894 4 H 0.090 0.910 5 C 0.517 3.483 6 O -0.513 6.513 7 N -0.604 5.604 8 C 0.058 3.942 9 C 0.133 3.867 10 H 0.118 0.882 11 C -0.153 4.153 12 C 0.059 3.941 13 N -0.502 5.502 14 C 0.042 3.958 15 C 0.444 3.556 16 O -0.575 6.575 17 N -0.567 5.567 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.034 3.966 27 C -0.185 4.185 28 C -0.157 4.157 29 C -0.176 4.176 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.088 0.912 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.084 0.916 45 H 0.050 0.950 46 H 0.121 0.879 47 H 0.107 0.893 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.309 -9.161 13.552 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.270 6.270 3 C 0.045 3.955 4 H 0.107 0.893 5 C 0.303 3.697 6 O -0.387 6.387 7 N -0.339 5.339 8 C -0.085 4.085 9 C 0.029 3.971 10 H 0.136 0.864 11 C -0.193 4.193 12 C -0.069 4.069 13 N -0.226 5.226 14 C -0.090 4.090 15 C 0.229 3.771 16 O -0.458 6.458 17 N -0.204 5.204 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.095 4.095 27 C -0.204 4.204 28 C -0.193 4.193 29 C -0.213 4.213 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.068 0.932 46 H 0.139 0.861 47 H 0.126 0.874 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.396 -10.591 12.558 27.775 hybrid contribution -0.228 1.815 0.114 1.833 sum -22.624 -8.775 12.672 27.376 Atomic orbital electron populations 1.23014 0.80717 1.03411 1.00167 1.88063 1.19557 1.24912 1.94508 1.21360 0.94277 0.86842 0.93049 0.89259 1.20391 0.84374 0.83449 0.81461 1.90732 1.63237 1.31683 1.53060 1.47681 1.35347 1.06949 1.43917 1.22117 1.00906 0.86826 0.98616 1.22264 0.85073 1.01937 0.87830 0.86436 1.23204 0.98775 0.99376 0.97902 1.22683 0.87899 1.01483 0.94815 1.63213 1.27848 1.27505 1.04034 1.22082 0.97380 0.90227 0.99284 1.19730 0.85071 0.83553 0.88728 1.90530 1.69453 1.50643 1.35181 1.41859 1.36859 1.19829 1.21852 1.19694 1.16437 1.05738 1.00758 0.87940 1.25249 0.98724 0.95951 0.98111 1.69608 1.42088 1.13246 1.29567 0.85862 0.79448 0.78646 0.80368 1.20479 1.20956 1.19409 1.23374 0.93694 0.98834 0.93596 1.22793 1.02255 1.05411 0.89939 1.22942 1.02347 0.94612 0.99437 1.23086 0.95686 1.01480 1.01025 0.88984 0.93616 0.93738 0.92309 0.89942 0.90208 0.91293 0.90431 0.89586 0.92300 0.93364 0.89416 0.77572 0.91941 0.89762 0.93223 0.86140 0.87439 0.88547 0.88239 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.71 101.05 1.08 1.23 16 2 O -0.35 -3.59 8.26 -54.93 -0.45 -4.04 16 3 C 0.11 0.93 2.16 -27.89 -0.06 0.87 16 4 H 0.09 0.58 7.43 -51.93 -0.39 0.19 16 5 C 0.52 6.25 7.01 -10.99 -0.08 6.17 16 6 O -0.51 -8.56 15.92 -14.15 -0.23 -8.78 16 7 N -0.60 -6.21 2.91 -171.49 -0.50 -6.70 16 8 C 0.06 0.39 8.74 59.84 0.52 0.91 16 9 C 0.13 1.65 3.45 -65.80 -0.23 1.42 16 10 H 0.12 1.74 7.02 -51.93 -0.36 1.38 16 11 C -0.15 -1.84 6.53 -24.91 -0.16 -2.00 16 12 C 0.06 0.93 5.64 -2.83 -0.02 0.92 16 13 N -0.50 -8.39 4.85 -232.69 -1.13 -9.52 16 14 C 0.04 0.74 5.03 -4.98 -0.03 0.72 16 15 C 0.44 10.50 7.43 -10.99 -0.08 10.42 16 16 O -0.57 -15.66 15.12 5.54 0.08 -15.58 16 17 N -0.57 -14.34 5.29 -10.96 -0.06 -14.40 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 22 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 C 0.03 0.44 6.24 -2.30 -0.01 0.43 16 27 C -0.19 -1.32 4.41 -90.62 -0.40 -1.72 16 28 C -0.16 -1.11 9.86 -26.73 -0.26 -1.37 16 29 C -0.18 -0.92 10.09 -26.73 -0.27 -1.19 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.20 6.04 -51.93 -0.31 -0.12 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 34 H 0.08 0.41 4.40 -51.93 -0.23 0.19 16 35 H 0.08 0.53 6.00 -51.93 -0.31 0.22 16 36 H 0.07 0.72 7.23 -51.93 -0.38 0.35 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.06 0.99 7.32 -51.93 -0.38 0.61 16 40 H 0.05 0.76 7.96 -51.93 -0.41 0.34 16 41 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.55 5.67 -51.93 -0.29 0.26 16 46 H 0.12 0.82 6.43 -51.93 -0.33 0.48 16 47 H 0.11 0.86 7.02 -51.92 -0.36 0.50 16 48 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 0.42 6.18 -51.93 -0.32 0.10 16 LS Contribution 393.98 15.07 5.94 5.94 Total: -1.00 -34.80 393.98 -8.59 -43.39 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -7.72 Total: 8.57 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -0.23 Total: 8.83 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.96 Total: -54.45 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.60 Total: -28.40 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.80 -8.59 -43.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318400032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.465 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds