Wall clock time and date at job start Sat Apr 11 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99933 * 2 1 4 4 H 1.09000 * 109.46968 * 340.48227 * 3 2 1 5 5 C 1.50695 * 109.46824 * 220.47850 * 3 2 1 6 6 O 1.21283 * 120.00579 * 349.85413 * 5 3 2 7 7 N 1.34780 * 119.99785 * 169.85941 * 5 3 2 8 8 C 1.46496 * 119.99850 * 4.12533 * 7 5 3 9 9 C 1.46502 * 120.00244 * 184.13247 * 7 5 3 10 10 H 1.09001 * 110.90125 * 357.58282 * 9 7 5 11 11 C 1.55138 * 110.99330 * 121.44726 * 9 7 5 12 12 C 1.54323 * 103.01769 * 153.74335 * 11 9 7 13 13 N 1.47444 * 107.23517 * 337.72289 * 12 11 9 14 14 C 1.46896 * 110.99595 * 236.74080 * 13 12 11 15 15 C 1.50695 * 109.47344 * 290.11955 * 14 13 12 16 16 O 1.21297 * 119.99738 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00276 * 180.02562 * 15 14 13 18 18 C 1.37104 * 120.00180 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99514 * 0.02562 * 18 17 15 20 20 C 1.38944 * 119.99954 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00432 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99781 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46921 * 90.00036 * 22 20 18 24 24 H 1.48496 * 109.47527 * 210.00057 * 22 20 18 25 25 H 1.48495 * 109.47365 * 330.00483 * 22 20 18 26 26 C 1.47848 * 108.56298 * 359.00520 * 13 12 11 27 27 C 1.52995 * 109.46899 * 100.47800 * 3 2 1 28 28 C 1.52997 * 117.50468 * 2.75033 * 27 3 2 29 29 C 1.52998 * 60.00178 * 252.50777 * 28 27 3 30 30 H 1.09003 * 109.46997 * 184.39188 * 1 2 3 31 31 H 1.08997 * 109.47178 * 304.39407 * 1 2 3 32 32 H 1.09004 * 109.46764 * 64.39743 * 1 2 3 33 33 H 1.09002 * 109.47707 * 269.99682 * 8 7 5 34 34 H 1.09004 * 109.47409 * 30.00369 * 8 7 5 35 35 H 1.09007 * 109.47018 * 149.99700 * 8 7 5 36 36 H 1.09004 * 110.70550 * 35.36896 * 11 9 7 37 37 H 1.08991 * 110.70873 * 272.12883 * 11 9 7 38 38 H 1.08998 * 109.88218 * 97.12400 * 12 11 9 39 39 H 1.08996 * 109.89161 * 218.15132 * 12 11 9 40 40 H 1.08999 * 109.47792 * 50.12702 * 14 13 12 41 41 H 1.09003 * 109.46869 * 170.12443 * 14 13 12 42 42 H 0.96996 * 119.99986 * 359.97438 * 17 15 14 43 43 H 0.96995 * 120.00387 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.36812 * 142.93406 * 26 13 12 45 45 H 1.09006 * 110.37215 * 265.26619 * 26 13 12 46 46 H 1.09005 * 115.54820 * 148.45026 * 27 3 2 47 47 H 1.09007 * 117.49380 * 359.97438 * 28 27 3 48 48 H 1.09001 * 117.50563 * 145.01694 * 28 27 3 49 49 H 1.08998 * 117.49776 * 252.50799 * 29 28 27 50 50 H 1.09003 * 117.51901 * 107.47405 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2731 2.0313 -0.3433 5 6 3.2018 1.3247 -0.9223 6 8 3.6341 0.2866 -1.3765 7 7 3.7873 2.4958 -1.2425 8 6 3.3231 3.7399 -0.6239 9 6 4.8877 2.5244 -2.2092 10 1 5.1389 1.5175 -2.5424 11 6 4.5451 3.4393 -3.4144 12 6 5.9338 3.8870 -3.9168 13 7 6.8752 3.7348 -2.7923 14 6 7.5456 5.0068 -2.4913 15 6 8.5002 5.3477 -3.6064 16 8 8.6107 4.6044 -4.5586 17 7 9.2310 6.4785 -3.5458 18 6 10.0991 6.7889 -4.5606 19 1 10.1968 6.1275 -5.4088 20 6 10.8529 7.9544 -4.4979 21 7 10.7343 8.7590 -3.4656 22 14 12.0361 8.3770 -5.8802 23 1 11.3296 9.1843 -6.9070 24 1 13.1759 9.1573 -5.3351 25 1 12.5434 7.1253 -6.4976 26 6 6.1281 3.2385 -1.6169 27 6 2.4573 1.6646 1.4184 28 6 2.2775 0.6035 2.5059 29 6 1.3691 1.8344 2.4805 30 1 -0.3633 -1.0247 0.0787 31 1 -0.3633 0.5805 0.8480 32 1 -0.3633 0.4441 -0.9268 33 1 2.5333 4.1770 -1.2349 34 1 2.9362 3.5279 0.3729 35 1 4.1546 4.4409 -0.5493 36 1 3.9569 4.2983 -3.0912 37 1 4.0182 2.8786 -4.1863 38 1 6.2470 3.2581 -4.7502 39 1 5.8955 4.9294 -4.2330 40 1 6.8006 5.7968 -2.3964 41 1 8.0978 4.9140 -1.5561 42 1 9.1423 7.0730 -2.7846 43 1 11.2602 9.5728 -3.4220 44 1 6.7370 2.5342 -1.0501 45 1 5.8206 4.0708 -0.9836 46 1 3.3319 2.3117 1.4860 47 1 1.8403 -0.3504 2.2108 48 1 3.0339 0.5522 3.2891 49 1 1.5279 2.5929 3.2470 50 1 0.3346 1.6905 2.1685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318400032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:07 Heat of formation + Delta-G solvation = -84.240701 kcal Electronic energy + Delta-G solvation = -30064.187323 eV Core-core repulsion = 25899.457681 eV Total energy + Delta-G solvation = -4164.729642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70741 -40.60479 -39.59232 -38.73004 -36.96564 -36.27995 -35.81748 -33.32768 -32.62227 -30.50602 -29.41500 -28.35443 -27.69177 -26.91663 -25.92327 -23.22738 -22.85629 -22.34767 -21.74947 -20.96973 -20.33883 -19.81842 -18.56838 -18.00114 -17.69718 -17.44316 -17.14642 -16.68137 -16.52436 -16.34431 -16.01460 -15.68588 -15.47339 -15.24212 -14.77622 -14.69345 -14.60892 -14.26224 -14.05744 -13.94670 -13.74925 -13.56432 -13.33952 -13.25359 -12.92368 -12.77695 -12.66000 -12.53995 -12.40977 -12.34217 -12.26466 -12.25649 -12.11984 -11.72202 -11.62170 -11.48757 -11.15769 -10.90455 -10.39923 -10.32801 -9.99373 -9.73909 -9.23063 -8.45716 -5.93914 1.37891 1.41664 1.43377 1.54107 1.59988 2.07211 2.29253 2.63213 2.86708 3.04821 3.20966 3.33834 3.34169 3.56751 3.67638 3.71154 3.86628 3.99083 4.05187 4.11605 4.15983 4.24910 4.31054 4.32611 4.35863 4.42890 4.48361 4.50721 4.55859 4.57574 4.67881 4.77996 4.78436 4.89393 4.90448 4.94435 4.97805 5.04395 5.17788 5.21266 5.31992 5.39950 5.42068 5.86555 5.98370 6.01609 6.10300 6.31544 6.62500 7.06321 7.14666 7.58186 8.14803 8.71645 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029709 B = 0.001946 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.249461 B =14387.286641 C =14874.065974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.386 6.386 3 C 0.112 3.888 4 H 0.118 0.882 5 C 0.509 3.491 6 O -0.573 6.573 7 N -0.596 5.596 8 C 0.050 3.950 9 C 0.138 3.862 10 H 0.085 0.915 11 C -0.135 4.135 12 C 0.061 3.939 13 N -0.530 5.530 14 C 0.057 3.943 15 C 0.440 3.560 16 O -0.618 6.618 17 N -0.574 5.574 18 C -0.331 4.331 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.276 1.276 26 C 0.041 3.959 27 C -0.194 4.194 28 C -0.176 4.176 29 C -0.148 4.148 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.125 0.875 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.116 0.884 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.264 -7.198 15.491 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.304 6.304 3 C 0.051 3.949 4 H 0.135 0.865 5 C 0.298 3.702 6 O -0.451 6.451 7 N -0.329 5.329 8 C -0.091 4.091 9 C 0.033 3.967 10 H 0.103 0.897 11 C -0.174 4.174 12 C -0.067 4.067 13 N -0.255 5.255 14 C -0.075 4.075 15 C 0.227 3.773 16 O -0.503 6.503 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.094 0.906 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.201 1.201 26 C -0.087 4.087 27 C -0.212 4.212 28 C -0.213 4.213 29 C -0.184 4.184 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.127 0.873 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.143 0.857 47 H 0.111 0.889 48 H 0.116 0.884 49 H 0.135 0.865 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.385 -8.581 14.543 29.661 hybrid contribution 0.361 1.148 -0.482 1.296 sum -24.024 -7.433 14.062 28.812 Atomic orbital electron populations 1.23204 0.78860 1.04350 1.01396 1.88032 1.21715 1.26022 1.94666 1.21411 0.93245 0.87114 0.93150 0.86483 1.21180 0.84968 0.82913 0.81184 1.90703 1.65136 1.33833 1.55438 1.47708 1.34195 1.08019 1.43015 1.22442 1.01744 0.85060 0.99889 1.21939 0.85943 1.00202 0.88650 0.89706 1.23063 0.96684 1.00089 0.97597 1.22537 0.89904 1.00142 0.94083 1.63052 1.29374 1.27314 1.05748 1.21929 0.96885 0.91570 0.97090 1.20827 0.84796 0.82190 0.89483 1.90504 1.70704 1.51744 1.37397 1.41910 1.37085 1.20641 1.21595 1.19623 1.18623 1.06463 1.01374 0.90573 1.25996 0.99647 0.95286 1.00330 1.69660 1.42466 1.13433 1.30492 0.84956 0.77676 0.78140 0.77735 1.19577 1.19498 1.20069 1.23334 0.93316 0.99553 0.92468 1.22779 1.03585 1.05731 0.89144 1.22956 1.03627 0.94836 0.99845 1.23174 0.95525 1.00038 0.99707 0.88554 0.91432 0.93162 0.90325 0.87845 0.89563 0.88563 0.90223 0.92752 0.93371 0.90390 0.87278 0.76943 0.91323 0.90394 0.90123 0.85681 0.88886 0.88398 0.86531 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.71 113.37 1.21 1.40 16 2 O -0.39 -7.55 8.26 -130.14 -1.07 -8.63 16 3 C 0.11 1.75 2.16 29.84 0.06 1.81 16 4 H 0.12 1.11 7.43 -2.39 -0.02 1.09 16 5 C 0.51 11.98 7.01 87.65 0.61 12.60 16 6 O -0.57 -19.88 15.92 15.80 0.25 -19.63 16 7 N -0.60 -11.15 2.91 -814.87 -2.37 -13.52 16 8 C 0.05 0.47 8.74 127.77 1.12 1.58 16 9 C 0.14 3.33 3.45 46.37 0.16 3.49 16 10 H 0.08 2.65 7.02 -2.39 -0.02 2.64 16 11 C -0.14 -3.09 6.53 31.78 0.21 -2.88 16 12 C 0.06 1.96 5.64 86.65 0.49 2.45 16 13 N -0.53 -17.51 4.85 -890.10 -4.32 -21.83 16 14 C 0.06 1.92 5.03 85.56 0.43 2.35 16 15 C 0.44 21.06 7.43 87.66 0.65 21.71 16 16 O -0.62 -34.92 15.12 -3.08 -0.05 -34.97 16 17 N -0.57 -29.43 5.29 -306.99 -1.62 -31.05 16 18 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 19 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 20 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 21 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 22 Si 0.99 43.19 29.55 68.60 2.03 45.21 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 26 C 0.04 1.01 6.24 86.77 0.54 1.55 16 27 C -0.19 -2.27 4.41 -10.80 -0.05 -2.32 16 28 C -0.18 -2.22 9.86 30.59 0.30 -1.91 16 29 C -0.15 -1.01 10.09 30.59 0.31 -0.70 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.39 6.04 -2.39 -0.01 0.37 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 34 H 0.10 0.58 4.40 -2.38 -0.01 0.57 16 35 H 0.09 0.75 6.00 -2.38 -0.01 0.73 16 36 H 0.10 1.70 7.23 -2.38 -0.02 1.69 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 1.61 7.32 -2.39 -0.02 1.59 16 40 H 0.08 2.21 7.96 -2.39 -0.02 2.19 16 41 H 0.11 3.26 8.07 -2.39 -0.02 3.24 16 42 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 43 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.08 1.49 5.67 -2.38 -0.01 1.48 16 46 H 0.13 1.33 6.43 -2.38 -0.02 1.31 16 47 H 0.09 1.45 7.02 -2.38 -0.02 1.43 16 48 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.11 0.49 6.18 -2.39 -0.01 0.48 16 Total: -1.00 -79.80 393.98 0.70 -79.11 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.23 Total: 31.52 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: 7.33 Total: 22.81 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -8.03 Total: -115.42 kcal Atomic # 8 Polarization: -62.35 SS G_CDS: -0.87 Total: -63.22 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -79.80 0.70 -79.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318400032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.134 kcal (2) G-P(sol) polarization free energy of solvation -79.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds